Wall clock time and date at job start Mon Mar 30 2020 07:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00215 * 2 1 4 4 H 1.48494 * 109.47268 * 270.00009 * 3 2 1 5 5 H 1.48497 * 109.46987 * 29.99991 * 3 2 1 6 6 H 1.48502 * 109.47023 * 149.99631 * 3 2 1 7 7 C 1.37882 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99875 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00244 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47279 * 180.02562 * 9 7 2 11 11 C 1.39675 * 120.00236 * 180.02562 * 10 9 7 12 12 C 1.38936 * 120.07273 * 359.97438 * 11 10 9 13 13 C 1.38080 * 119.92385 * 179.97438 * 12 11 10 14 14 C 1.38310 * 120.07413 * 359.97438 * 13 12 11 15 15 C 1.38261 * 120.14989 * 0.27913 * 14 13 12 16 16 C 1.50698 * 119.96081 * 179.72100 * 15 14 13 17 17 C 1.52994 * 109.47193 * 60.00313 * 16 15 14 18 18 C 1.52999 * 109.47608 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47400 * 59.99156 * 18 17 16 20 20 C 1.52994 * 109.47430 * 300.00953 * 19 18 17 21 21 C 1.53003 * 109.47347 * 59.99644 * 20 19 18 22 22 C 1.38124 * 120.07473 * 359.45020 * 15 14 13 23 23 H 0.96998 * 119.99694 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47089 * 59.99997 * 9 7 2 25 25 H 1.09000 * 109.46856 * 299.99815 * 9 7 2 26 26 H 0.96999 * 119.99965 * 0.02562 * 10 9 7 27 27 H 1.07999 * 120.03479 * 359.97438 * 12 11 10 28 28 H 1.08001 * 119.95839 * 179.97438 * 13 12 11 29 29 H 1.08002 * 119.92082 * 179.97438 * 14 13 12 30 30 H 1.09000 * 109.47267 * 179.97438 * 16 15 14 31 31 H 1.09006 * 109.47308 * 299.99840 * 17 16 15 32 32 H 1.09003 * 109.47475 * 59.99327 * 17 16 15 33 33 H 1.09006 * 109.46498 * 299.99585 * 18 17 16 34 34 H 1.09002 * 109.47515 * 179.97438 * 18 17 16 35 35 H 1.08993 * 109.47389 * 180.02562 * 19 18 17 36 36 H 1.09006 * 109.46489 * 60.00981 * 19 18 17 37 37 H 1.09006 * 109.47308 * 299.99526 * 20 19 18 38 38 H 1.09003 * 109.47507 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.46783 * 180.02562 * 21 20 19 40 40 H 1.08992 * 109.47081 * 60.00265 * 21 20 19 41 41 H 1.07999 * 120.04037 * 180.27347 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0018 11 6 1.7373 -4.9296 0.0015 12 6 0.3717 -5.1852 0.0005 13 6 -0.0852 -6.4882 -0.0003 14 6 0.8149 -7.5383 -0.0008 15 6 2.1746 -7.2875 0.0055 16 6 3.1515 -8.4349 0.0113 17 6 2.9391 -9.2920 -1.2381 18 6 3.9305 -10.4573 -1.2319 19 6 3.7055 -11.3118 0.0172 20 6 3.9180 -10.4547 1.2665 21 6 2.9265 -9.2894 1.2604 22 6 2.6385 -5.9865 0.0007 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 3.1566 -3.4356 0.0028 27 1 -0.3317 -4.3657 0.0004 28 1 -1.1467 -6.6876 -0.0006 29 1 0.4548 -8.5566 -0.0010 30 1 4.1695 -8.0453 0.0153 31 1 1.9210 -9.6817 -1.2426 32 1 3.0989 -8.6832 -2.1280 33 1 4.9486 -10.0680 -1.2272 34 1 3.7788 -11.0682 -2.1218 35 1 4.4121 -12.1417 0.0218 36 1 2.6874 -11.7011 0.0124 37 1 4.9362 -10.0653 1.2713 38 1 3.7573 -11.0633 2.1564 39 1 3.0782 -8.6786 2.1503 40 1 1.9085 -9.6787 1.2557 41 1 3.7006 -5.7912 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530236837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:31 Heat of formation + Delta-G solvation = -28.467828 kcal Electronic energy + Delta-G solvation = -18663.036614 eV Core-core repulsion = 15926.010580 eV Total energy + Delta-G solvation = -2737.026034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.75875 -38.97364 -36.61267 -34.66077 -33.15539 -31.54720 -31.17531 -29.35405 -28.04910 -25.07452 -23.61833 -23.34582 -23.23971 -21.18717 -20.23405 -19.01119 -17.60520 -17.03720 -16.66161 -16.05543 -16.01943 -15.12229 -15.07288 -14.96045 -14.94799 -14.47739 -14.18383 -13.95318 -13.86023 -13.26268 -13.04780 -12.97687 -12.89756 -12.70250 -12.42294 -12.26645 -11.95278 -11.93993 -11.72304 -11.45212 -11.21627 -11.14641 -10.87942 -10.86190 -10.53144 -9.53548 -8.33257 -8.13496 -6.47650 0.60614 0.86193 1.38870 1.40681 1.51946 2.32152 2.89707 3.00756 3.06600 3.73887 3.87918 4.01035 4.14870 4.29936 4.36396 4.44805 4.47799 4.62615 4.64968 4.71005 4.73619 4.79684 4.81623 4.87783 4.97005 5.15005 5.22466 5.23638 5.26479 5.30829 5.33487 5.35510 5.45238 5.51554 5.53461 5.58127 5.62015 5.76185 5.84632 5.91203 6.19993 6.47741 6.74550 7.14828 7.27019 8.78768 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041907 B = 0.003480 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.989252 B = 8044.386781 C = 8366.297473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.560 4.560 8 H 0.070 0.930 9 C 0.275 3.725 10 N -0.738 5.738 11 C 0.205 3.795 12 C -0.234 4.234 13 C -0.070 4.070 14 C -0.185 4.185 15 C -0.027 4.027 16 C -0.041 4.041 17 C -0.107 4.107 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.107 4.107 22 C -0.214 4.214 23 H 0.270 0.730 24 H -0.012 1.012 25 H -0.012 1.012 26 H 0.396 0.604 27 H 0.093 0.907 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.831 -21.596 0.029 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.803 3.197 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.597 4.597 8 H 0.088 0.912 9 C 0.152 3.848 10 N -0.364 5.364 11 C 0.099 3.901 12 C -0.257 4.257 13 C -0.089 4.089 14 C -0.205 4.205 15 C -0.028 4.028 16 C -0.060 4.060 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.145 4.145 22 C -0.237 4.237 23 H 0.078 0.922 24 H 0.006 0.994 25 H 0.006 0.994 26 H 0.230 0.770 27 H 0.111 0.889 28 H 0.153 0.847 29 H 0.156 0.844 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.522 -21.303 0.034 22.279 hybrid contribution 0.198 1.600 -0.010 1.612 sum 6.720 -19.703 0.024 20.817 Atomic orbital electron populations 1.70084 1.07891 1.28547 1.50015 1.25960 0.95851 1.03513 0.93860 0.85229 0.78452 0.77382 0.78622 1.19576 1.20432 1.18602 1.21594 0.93956 0.91314 1.52871 0.91160 1.18512 0.88680 0.84087 0.93561 1.45143 1.08865 1.02469 1.79935 1.18320 0.93572 0.85251 0.92932 1.20746 0.93783 0.97960 1.13236 1.21058 1.00363 0.91206 0.96231 1.20822 0.92256 0.98922 1.08526 1.19792 0.94717 0.93141 0.95123 1.20156 0.96872 0.92413 0.96513 1.21558 1.00309 0.96416 0.96199 1.21538 0.99015 0.96406 0.98492 1.21538 1.02120 0.97827 0.94004 1.21538 0.99030 0.96400 0.98485 1.21558 1.00289 0.96430 0.96201 1.20586 0.98376 0.91583 1.13149 0.92152 0.99399 0.99395 0.77024 0.88858 0.84707 0.84441 0.90963 0.91427 0.92872 0.92074 0.91171 0.91118 0.91753 0.92074 0.91174 0.92882 0.91416 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.98 43.35 29.54 68.60 2.03 45.38 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.56 -31.62 9.28 25.60 0.24 -31.38 16 8 H 0.07 3.75 7.60 -2.91 -0.02 3.73 16 9 C 0.27 15.11 4.67 85.63 0.40 15.51 16 10 N -0.74 -33.85 5.73 -343.13 -1.96 -35.81 16 11 C 0.21 8.49 6.65 38.21 0.25 8.74 16 12 C -0.23 -9.59 9.31 22.40 0.21 -9.38 16 13 C -0.07 -2.28 10.04 22.25 0.22 -2.05 16 14 C -0.19 -5.20 8.71 22.29 0.19 -5.00 16 15 C -0.03 -0.77 4.78 -19.89 -0.10 -0.87 16 16 C -0.04 -0.89 2.36 -11.54 -0.03 -0.91 16 17 C -0.11 -2.01 5.02 30.59 0.15 -1.86 16 18 C -0.12 -1.72 5.92 30.59 0.18 -1.54 16 19 C -0.12 -1.54 5.92 30.59 0.18 -1.35 16 20 C -0.12 -1.72 5.92 30.59 0.18 -1.54 16 21 C -0.11 -2.01 5.02 30.60 0.15 -1.86 16 22 C -0.21 -7.30 9.52 22.40 0.21 -7.09 16 23 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 24 H -0.01 -0.71 7.95 -2.39 -0.02 -0.72 16 25 H -0.01 -0.70 7.95 -2.39 -0.02 -0.72 16 26 H 0.40 16.68 8.33 -92.71 -0.77 15.91 16 27 H 0.09 4.27 6.74 -2.91 -0.02 4.25 16 28 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 29 H 0.14 3.04 7.09 -2.91 -0.02 3.02 16 30 H 0.07 1.58 7.87 -2.39 -0.02 1.56 16 31 H 0.07 1.23 7.38 -2.38 -0.02 1.21 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.23 7.38 -2.39 -0.02 1.21 16 41 H 0.12 3.79 7.94 -2.91 -0.02 3.76 16 Total: -1.00 -62.93 326.18 3.49 -59.44 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.22 Total: 25.81 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 2.92 Total: -39.66 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -1.68 Total: -90.97 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -62.93 3.49 -59.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530236837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.971 kcal (2) G-P(sol) polarization free energy of solvation -62.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds