Wall clock time and date at job start Mon Mar 30 2020 07:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46902 * 109.46626 * 119.99824 * 2 1 3 5 5 C 1.46901 * 111.00221 * 274.99771 * 4 2 1 6 6 C 1.52993 * 109.47164 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47209 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00026 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99961 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00212 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99758 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46903 * 89.99643 * 11 9 7 13 13 H 1.48496 * 109.47079 * 209.99963 * 11 9 7 14 14 H 1.48504 * 109.46955 * 330.00087 * 11 9 7 15 15 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 16 16 C 1.35111 * 125.68205 * 85.00151 * 15 2 1 17 17 N 1.36837 * 107.17484 * 180.02562 * 16 15 2 18 18 C 1.36482 * 132.56666 * 180.02562 * 17 16 15 19 19 C 1.34956 * 120.61342 * 179.97438 * 18 17 16 20 20 C 1.40476 * 120.29473 * 0.02841 * 19 18 17 21 21 C 1.36021 * 119.69289 * 359.96833 * 20 19 18 22 22 C 1.37081 * 107.00224 * 359.97438 * 17 16 15 23 23 N 1.32557 * 108.03306 * 359.73861 * 22 17 16 24 24 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.00902 * 110.99496 * 151.04692 * 4 2 1 28 28 H 1.09001 * 109.47359 * 300.00457 * 5 4 2 29 29 H 1.08999 * 109.46991 * 59.99963 * 5 4 2 30 30 H 1.09001 * 109.47186 * 300.00355 * 6 5 4 31 31 H 1.09009 * 109.47391 * 60.00207 * 6 5 4 32 32 H 0.96998 * 119.99702 * 179.97438 * 10 9 7 33 33 H 1.07996 * 126.41413 * 359.97438 * 16 15 2 34 34 H 1.08001 * 119.69413 * 359.95108 * 18 17 16 35 35 H 1.08001 * 119.85236 * 179.97438 * 19 18 17 36 36 H 1.07998 * 120.15039 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.33061 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2226 2.3470 6 6 2.5961 -0.5328 3.5742 7 6 2.6599 0.4058 4.7515 8 1 2.3634 1.4378 4.6360 9 6 3.0969 -0.0531 5.9761 10 7 3.4585 -1.3097 6.1166 11 14 3.1754 1.1102 7.4356 12 1 1.8816 1.0785 8.1639 13 1 4.2677 0.6867 8.3480 14 1 3.4390 2.4904 6.9549 15 6 2.0324 -0.7105 -1.2304 16 6 2.2050 -0.1512 -2.4481 17 7 2.6727 -1.1315 -3.2804 18 6 3.0168 -1.1347 -4.6011 19 6 3.4606 -2.2634 -5.1929 20 6 3.5737 -3.4532 -4.4548 21 6 3.2341 -3.4639 -3.1377 22 6 2.7735 -2.2767 -2.5339 23 7 2.3869 -1.9959 -1.2974 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.9173 -1.1205 1.0288 28 1 2.7588 1.0462 2.1183 29 1 1.0871 0.6164 2.5525 30 1 1.9200 -1.3567 3.8030 31 1 3.5916 -0.9263 3.3684 32 1 3.7663 -1.6323 6.9781 33 1 2.0095 0.8769 -2.7149 34 1 2.9329 -0.2256 -5.1781 35 1 3.7292 -2.2522 -6.2390 36 1 3.9287 -4.3553 -4.9308 37 1 3.3174 -4.3728 -2.5603 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575195097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:32 Heat of formation + Delta-G solvation = 61.440379 kcal Electronic energy + Delta-G solvation = -18212.708530 eV Core-core repulsion = 15376.040865 eV Total energy + Delta-G solvation = -2836.667665 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.74427 -38.93636 -37.42382 -35.27951 -34.49076 -32.99397 -30.69673 -30.00323 -29.14878 -26.34906 -24.86467 -23.61662 -23.47147 -22.22520 -20.93532 -18.73589 -18.40526 -17.69170 -17.05922 -16.89857 -16.44477 -16.18216 -15.79875 -15.28231 -15.11595 -14.87411 -14.51723 -14.11480 -13.65348 -13.20218 -12.98826 -12.95589 -12.85005 -12.60775 -12.49165 -12.35349 -12.32683 -11.97021 -11.78947 -11.41411 -11.28737 -10.93962 -10.56564 -9.66126 -9.23340 -8.78877 -8.19233 -6.31816 -0.11192 0.35273 1.40155 1.43158 1.54008 1.69986 1.86766 2.41235 2.62374 3.13185 3.13879 3.34839 3.58362 3.90498 3.97420 4.18542 4.26738 4.34854 4.41135 4.47407 4.54856 4.64441 4.74743 4.88732 4.96812 4.97912 5.07753 5.16904 5.30608 5.35232 5.45313 5.60211 5.63951 5.67238 5.79890 6.13816 6.18608 6.34518 6.51051 6.85733 6.99619 7.37477 8.93441 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.039029 B = 0.003449 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.235141 B = 8116.915939 C = 8508.664365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.161 3.839 3 H 0.067 0.933 4 N -0.687 5.687 5 C 0.085 3.915 6 C 0.033 3.967 7 C -0.544 4.544 8 H 0.064 0.936 9 C -0.003 4.003 10 N -0.934 5.934 11 Si 0.972 3.028 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.260 1.260 15 C 0.038 3.962 16 C -0.093 4.093 17 N -0.366 5.366 18 C 0.043 3.957 19 C -0.139 4.139 20 C -0.083 4.083 21 C -0.115 4.115 22 C 0.196 3.804 23 N -0.525 5.525 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.335 0.665 28 H 0.019 0.981 29 H 0.065 0.935 30 H -0.009 1.009 31 H -0.016 1.016 32 H 0.264 0.736 33 H 0.216 0.784 34 H 0.198 0.802 35 H 0.193 0.807 36 H 0.176 0.824 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 1.663 -28.286 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.051 3.949 3 H 0.084 0.916 4 N -0.318 5.318 5 C -0.044 4.044 6 C -0.004 4.004 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.201 4.201 10 N -0.574 5.574 11 Si 0.796 3.204 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.184 1.184 15 C -0.094 4.094 16 C -0.225 4.225 17 N -0.038 5.038 18 C -0.078 4.078 19 C -0.159 4.159 20 C -0.107 4.107 21 C -0.135 4.135 22 C -0.047 4.047 23 N -0.246 5.246 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.153 0.847 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.009 0.991 31 H 0.002 0.998 32 H 0.072 0.928 33 H 0.232 0.768 34 H 0.215 0.785 35 H 0.210 0.790 36 H 0.193 0.807 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.548 0.833 -27.347 27.403 hybrid contribution 0.899 1.078 0.475 1.482 sum -0.649 1.911 -26.871 26.947 Atomic orbital electron populations 1.21698 0.92745 1.01543 1.02210 1.19966 0.96431 0.94269 0.84269 0.91561 1.60471 1.33752 1.33403 1.04194 1.21864 0.99398 0.93047 0.90065 1.18899 0.93964 0.95111 0.92473 1.21619 1.44022 0.97043 0.95515 0.91738 1.26070 0.94696 0.96954 1.02378 1.70140 1.45185 1.16684 1.25434 0.85344 0.77990 0.78962 0.78090 1.19616 1.20728 1.18433 1.21017 1.02145 0.90753 0.95487 1.22703 1.13282 0.96455 0.90010 1.43027 1.40931 1.10141 1.09673 1.22438 1.00672 1.03382 0.81333 1.21393 1.00865 0.90681 1.02995 1.21528 0.96611 1.00460 0.92052 1.20547 1.01721 0.94704 0.96574 1.21520 1.05435 0.90059 0.87730 1.70605 1.20713 1.16057 1.17218 0.92291 0.90081 0.94031 0.84697 0.96250 0.91643 0.99102 0.99790 0.92756 0.76767 0.78549 0.79022 0.80706 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.69 9.40 71.98 0.68 -3.01 16 2 C 0.16 5.38 3.07 44.17 0.14 5.51 16 3 H 0.07 2.01 7.80 -2.39 -0.02 1.99 16 4 N -0.69 -29.19 6.20 -495.45 -3.07 -32.26 16 5 C 0.08 3.93 5.42 86.30 0.47 4.39 16 6 C 0.03 1.91 5.23 29.85 0.16 2.07 16 7 C -0.54 -32.62 9.11 25.60 0.23 -32.39 16 8 H 0.06 3.65 7.74 -2.91 -0.02 3.62 16 9 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 10 N -0.93 -59.90 13.29 21.45 0.28 -59.61 16 11 Si 0.97 45.81 29.54 68.60 2.03 47.83 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 15 C 0.04 1.24 5.79 41.58 0.24 1.48 16 16 C -0.09 -2.24 11.66 83.19 0.97 -1.27 16 17 N -0.37 -8.33 2.94 -352.16 -1.04 -9.37 16 18 C 0.04 0.55 10.95 83.21 0.91 1.46 16 19 C -0.14 -1.25 9.99 22.06 0.22 -1.03 16 20 C -0.08 -1.03 10.07 22.30 0.22 -0.80 16 21 C -0.12 -2.50 10.11 22.41 0.23 -2.27 16 22 C 0.20 5.73 7.81 134.10 1.05 6.78 16 23 N -0.53 -19.26 10.78 -182.41 -1.97 -21.23 16 24 H 0.06 1.78 7.45 -2.39 -0.02 1.76 16 25 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.34 15.20 8.05 -89.69 -0.72 14.48 16 28 H 0.02 0.86 8.06 -2.39 -0.02 0.84 16 29 H 0.07 2.92 7.44 -2.39 -0.02 2.90 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 32 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 33 H 0.22 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 35 H 0.19 0.05 8.06 -2.91 -0.02 0.03 16 36 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 37 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -80.44 315.82 2.54 -77.90 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.34 Total: 15.57 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 5.97 Total: -18.83 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -5.79 Total: -122.48 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -80.44 2.54 -77.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575195097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.340 kcal (2) G-P(sol) polarization free energy of solvation -80.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds