Wall clock time and date at job start Mon Mar 30 2020 07:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38256 * 120.00361 * 2 1 4 4 C 1.38208 * 120.00052 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.00040 * 359.95102 * 4 3 2 6 6 C 1.38204 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00188 * 179.97438 * 6 5 4 8 8 N 1.46906 * 112.84932 * 154.93054 * 7 6 5 9 9 C 1.46899 * 111.00035 * 293.97183 * 8 7 6 10 10 C 1.53006 * 109.46720 * 175.09392 * 9 8 7 11 11 C 1.50703 * 109.46547 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00073 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99588 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99819 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99843 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47201 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47179 * 119.99984 * 15 13 11 18 18 H 1.48500 * 109.47436 * 240.00058 * 15 13 11 19 19 C 1.53778 * 113.61304 * 286.12946 * 7 6 5 20 20 C 1.54060 * 86.98340 * 140.02116 * 19 7 6 21 21 C 1.53775 * 87.07435 * 334.56895 * 20 19 7 22 22 C 1.38217 * 119.99878 * 180.23032 * 2 1 3 23 23 H 1.09003 * 109.47071 * 90.00096 * 1 2 3 24 24 H 1.08999 * 109.47277 * 209.99918 * 1 2 3 25 25 H 1.09005 * 109.47092 * 330.00040 * 1 2 3 26 26 H 1.07997 * 119.99909 * 0.02562 * 3 2 1 27 27 H 1.08001 * 119.99992 * 179.97438 * 4 3 2 28 28 H 1.07999 * 119.99833 * 180.02562 * 5 4 3 29 29 H 1.00896 * 110.99818 * 170.01144 * 8 7 6 30 30 H 1.09001 * 109.47143 * 55.09183 * 9 8 7 31 31 H 1.08996 * 109.47030 * 295.09284 * 9 8 7 32 32 H 1.08992 * 109.46941 * 60.00075 * 10 9 8 33 33 H 1.09001 * 109.46934 * 299.99433 * 10 9 8 34 34 H 0.97006 * 119.99611 * 180.02562 * 14 13 11 35 35 H 1.09003 * 113.61088 * 254.60766 * 19 7 6 36 36 H 1.08988 * 113.61716 * 25.51568 * 19 7 6 37 37 H 1.08999 * 113.61500 * 220.02129 * 20 19 7 38 38 H 1.08998 * 113.68639 * 89.12574 * 20 19 7 39 39 H 1.09005 * 113.61595 * 270.88525 * 21 20 19 40 40 H 1.09002 * 113.62003 * 139.98163 * 21 20 19 41 41 H 1.08003 * 119.99803 * 0.02838 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2716 -0.0002 0.0000 6 6 3.5806 -1.1971 0.0004 7 6 4.3341 -2.5022 0.0004 8 7 3.5575 -3.6092 0.5745 9 6 3.3131 -3.3935 2.0069 10 6 2.4015 -4.5003 2.5410 11 6 2.1513 -4.2793 4.0106 12 1 2.5981 -3.4344 4.5133 13 6 1.3519 -5.1560 4.7132 14 7 0.8083 -6.1851 4.1009 15 14 1.0424 -4.8826 6.5349 16 1 1.7631 -3.6636 6.9820 17 1 -0.4138 -4.7099 6.7691 18 1 1.5312 -6.0565 7.3018 19 6 4.9805 -2.8402 -1.3534 20 6 6.1955 -3.3486 -0.5541 21 6 5.7593 -2.3908 0.5670 22 6 2.1980 -1.1970 -0.0048 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6584 2.1326 0.0004 27 1 4.1205 2.1325 -0.0010 28 1 5.3516 -0.0002 0.0000 29 1 4.0163 -4.4936 0.4150 30 1 2.8330 -2.4257 2.1519 31 1 4.2612 -3.4129 2.5442 32 1 2.8817 -5.4679 2.3960 33 1 1.4533 -4.4809 2.0037 34 1 0.2457 -6.8017 4.5952 35 1 4.4587 -3.6238 -1.9028 36 1 5.1958 -1.9644 -1.9652 37 1 7.1538 -3.0876 -1.0032 38 1 6.1295 -4.4013 -0.2794 39 1 6.1871 -1.3921 0.4792 40 1 5.8658 -2.8115 1.5669 41 1 1.6580 -2.1323 -0.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592145776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:13 Heat of formation + Delta-G solvation = 31.993042 kcal Electronic energy + Delta-G solvation = -19386.441278 eV Core-core repulsion = 16652.037024 eV Total energy + Delta-G solvation = -2734.404254 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.32494 -38.09096 -34.36210 -32.49379 -32.38999 -30.75482 -28.63993 -26.81205 -25.65145 -24.84163 -23.62270 -21.55418 -21.10003 -20.43466 -18.21903 -16.81852 -16.24886 -15.50377 -15.33022 -14.67366 -14.60529 -14.34367 -13.70248 -13.46713 -13.24586 -13.09406 -12.93088 -12.36437 -12.20174 -12.00634 -11.95165 -11.50244 -11.36371 -11.12934 -10.93150 -10.91872 -10.60932 -10.50019 -10.38193 -10.09956 -9.89707 -9.36321 -9.11203 -8.44320 -8.34947 -8.30509 -7.81321 -5.98589 -4.00551 1.57872 1.68763 3.31785 3.39240 3.43672 3.97021 4.40566 4.57894 4.70109 4.81858 4.83830 5.07571 5.12042 5.15898 5.35444 5.37653 5.42339 5.60240 5.74539 5.76501 5.78947 5.83252 5.92912 5.99759 6.04335 6.08212 6.16086 6.31461 6.37236 6.41583 6.45628 6.52944 6.68054 6.86899 6.95354 7.03554 7.30087 7.52295 7.74775 7.83757 7.98773 8.09838 8.45909 9.06902 9.63180 11.12864 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016604 B = 0.005933 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.889511 B = 4718.023370 C = 5722.946795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.129 4.129 4 C -0.124 4.124 5 C -0.128 4.128 6 C -0.052 4.052 7 C 0.135 3.865 8 N -0.663 5.663 9 C 0.066 3.934 10 C 0.028 3.972 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.126 4.126 20 C -0.143 4.143 21 C -0.175 4.175 22 C -0.087 4.087 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.340 0.660 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.013 0.987 33 H 0.024 0.976 34 H 0.259 0.741 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.681 11.530 -11.242 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.147 4.147 6 C -0.053 4.053 7 C 0.042 3.958 8 N -0.293 5.293 9 C -0.062 4.062 10 C -0.010 4.010 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.164 4.164 20 C -0.180 4.180 21 C -0.214 4.214 22 C -0.105 4.105 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.159 0.841 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.940 11.619 -11.393 17.323 hybrid contribution 0.731 -0.074 1.512 1.681 sum 6.671 11.545 -9.881 16.596 Atomic orbital electron populations 1.20786 0.91420 1.02973 1.01915 1.19978 0.96091 0.93211 0.99818 1.20949 0.94223 0.97282 1.02264 1.20963 0.94268 0.97491 1.01518 1.20973 0.99556 0.92034 1.02112 1.19527 0.93728 0.93289 0.98710 1.20821 0.89330 0.90171 0.95461 1.60479 1.48570 1.02821 1.17420 1.22180 0.98406 1.01703 0.83881 1.19043 0.94591 0.92292 0.95037 1.21211 1.29613 1.10444 0.94497 0.92804 1.24985 0.95849 0.95202 0.98261 1.69982 1.32936 1.14359 1.35994 0.86565 0.77993 0.78077 0.85553 1.19785 1.20970 1.21032 1.23124 0.96181 1.01351 0.95726 1.22874 0.98056 0.99519 0.97562 1.23779 0.98238 1.00165 0.99247 1.21137 0.93785 0.98043 0.97540 0.91559 0.90989 0.91955 0.86748 0.86656 0.86416 0.84141 0.91992 0.96497 0.96909 0.95739 0.93089 0.90669 0.89877 0.91568 0.90152 0.89780 0.90979 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 36.00 0.36 -1.07 16 2 C -0.09 -1.33 5.88 -104.62 -0.62 -1.95 16 3 C -0.13 -1.70 9.70 -39.59 -0.38 -2.09 16 4 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 5 C -0.13 -1.76 9.24 -39.59 -0.37 -2.12 16 6 C -0.05 -0.80 4.54 -104.63 -0.47 -1.28 16 7 C 0.13 2.01 1.01 -131.94 -0.13 1.88 16 8 N -0.66 -11.72 5.49 -100.31 -0.55 -12.27 16 9 C 0.07 1.40 5.09 -3.82 -0.02 1.38 16 10 C 0.03 0.73 5.27 -27.88 -0.15 0.58 16 11 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 15 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.13 -1.57 7.33 -25.77 -0.19 -1.76 16 20 C -0.14 -1.67 7.75 -25.77 -0.20 -1.87 16 21 C -0.17 -2.37 6.94 -25.92 -0.18 -2.55 16 22 C -0.09 -1.43 7.94 -39.58 -0.31 -1.74 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 25 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 27 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 28 H 0.12 1.40 5.94 -52.49 -0.31 1.08 16 29 H 0.34 5.76 7.94 -39.29 -0.31 5.45 16 30 H 0.06 1.38 6.55 -51.93 -0.34 1.04 16 31 H 0.02 0.36 6.76 -51.93 -0.35 0.01 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.95 8.09 -51.94 -0.42 0.53 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.95 7.73 -51.93 -0.40 0.55 16 39 H 0.08 1.02 5.78 -51.93 -0.30 0.72 16 40 H 0.07 1.09 6.70 -51.93 -0.35 0.74 16 41 H 0.14 2.45 7.44 -52.48 -0.39 2.06 16 LS Contribution 326.96 15.07 4.93 4.93 Total: -1.00 -30.21 326.96 -9.90 -40.10 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.52 Total: 4.81 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -3.47 Total: -28.16 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.19 Total: -38.56 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.21 -9.90 -40.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592145776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.097 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds