Wall clock time and date at job start Mon Mar 30 2020 07:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38256 * 120.00361 * 2 1 4 4 C 1.38208 * 120.00052 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.00040 * 359.95102 * 4 3 2 6 6 C 1.38204 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00188 * 179.97438 * 6 5 4 8 8 N 1.46906 * 112.84932 * 154.93054 * 7 6 5 9 9 C 1.46899 * 111.00035 * 293.97183 * 8 7 6 10 10 C 1.53006 * 109.46720 * 175.09392 * 9 8 7 11 11 C 1.50703 * 109.46547 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00073 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99588 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99819 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99843 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47201 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47179 * 119.99984 * 15 13 11 18 18 H 1.48500 * 109.47436 * 240.00058 * 15 13 11 19 19 C 1.53778 * 113.61304 * 286.12946 * 7 6 5 20 20 C 1.54060 * 86.98340 * 140.02116 * 19 7 6 21 21 C 1.53775 * 87.07435 * 334.56895 * 20 19 7 22 22 C 1.38217 * 119.99878 * 180.23032 * 2 1 3 23 23 H 1.09003 * 109.47071 * 90.00096 * 1 2 3 24 24 H 1.08999 * 109.47277 * 209.99918 * 1 2 3 25 25 H 1.09005 * 109.47092 * 330.00040 * 1 2 3 26 26 H 1.07997 * 119.99909 * 0.02562 * 3 2 1 27 27 H 1.08001 * 119.99992 * 179.97438 * 4 3 2 28 28 H 1.07999 * 119.99833 * 180.02562 * 5 4 3 29 29 H 1.00896 * 110.99818 * 170.01144 * 8 7 6 30 30 H 1.09001 * 109.47143 * 55.09183 * 9 8 7 31 31 H 1.08996 * 109.47030 * 295.09284 * 9 8 7 32 32 H 1.08992 * 109.46941 * 60.00075 * 10 9 8 33 33 H 1.09001 * 109.46934 * 299.99433 * 10 9 8 34 34 H 0.97006 * 119.99611 * 180.02562 * 14 13 11 35 35 H 1.09003 * 113.61088 * 254.60766 * 19 7 6 36 36 H 1.08988 * 113.61716 * 25.51568 * 19 7 6 37 37 H 1.08999 * 113.61500 * 220.02129 * 20 19 7 38 38 H 1.08998 * 113.68639 * 89.12574 * 20 19 7 39 39 H 1.09005 * 113.61595 * 270.88525 * 21 20 19 40 40 H 1.09002 * 113.62003 * 139.98163 * 21 20 19 41 41 H 1.08003 * 119.99803 * 0.02838 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2716 -0.0002 0.0000 6 6 3.5806 -1.1971 0.0004 7 6 4.3341 -2.5022 0.0004 8 7 3.5575 -3.6092 0.5745 9 6 3.3131 -3.3935 2.0069 10 6 2.4015 -4.5003 2.5410 11 6 2.1513 -4.2793 4.0106 12 1 2.5981 -3.4344 4.5133 13 6 1.3519 -5.1560 4.7132 14 7 0.8083 -6.1851 4.1009 15 14 1.0424 -4.8826 6.5349 16 1 1.7631 -3.6636 6.9820 17 1 -0.4138 -4.7099 6.7691 18 1 1.5312 -6.0565 7.3018 19 6 4.9805 -2.8402 -1.3534 20 6 6.1955 -3.3486 -0.5541 21 6 5.7593 -2.3908 0.5670 22 6 2.1980 -1.1970 -0.0048 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6584 2.1326 0.0004 27 1 4.1205 2.1325 -0.0010 28 1 5.3516 -0.0002 0.0000 29 1 4.0163 -4.4936 0.4150 30 1 2.8330 -2.4257 2.1519 31 1 4.2612 -3.4129 2.5442 32 1 2.8817 -5.4679 2.3960 33 1 1.4533 -4.4809 2.0037 34 1 0.2457 -6.8017 4.5952 35 1 4.4587 -3.6238 -1.9028 36 1 5.1958 -1.9644 -1.9652 37 1 7.1538 -3.0876 -1.0032 38 1 6.1295 -4.4013 -0.2794 39 1 6.1871 -1.3921 0.4792 40 1 5.8658 -2.8115 1.5669 41 1 1.6580 -2.1323 -0.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592145776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:13 Heat of formation + Delta-G solvation = 15.628809 kcal Electronic energy + Delta-G solvation = -19387.150885 eV Core-core repulsion = 16652.037024 eV Total energy + Delta-G solvation = -2735.113861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46005 -39.17709 -36.18792 -34.35543 -33.50948 -31.93972 -30.49251 -27.85768 -26.87995 -26.26685 -25.21096 -22.64853 -22.46125 -22.03222 -19.42928 -18.48667 -17.82061 -16.84676 -16.51116 -16.41352 -15.81650 -15.67264 -14.97270 -14.89475 -14.63584 -14.43780 -14.03943 -13.92460 -13.46607 -13.36889 -13.16875 -12.99135 -12.88043 -12.57976 -12.51448 -12.34073 -12.01418 -11.93993 -11.62366 -11.45543 -11.39079 -11.26100 -11.05884 -10.58510 -9.55128 -9.40941 -9.24403 -8.22326 -6.33543 0.50704 0.59235 1.37577 1.38136 1.51466 2.38298 2.89267 3.10968 3.19252 3.62591 3.75302 3.81153 4.03480 4.07132 4.16051 4.31905 4.34272 4.50479 4.57231 4.60676 4.69827 4.77700 4.81041 4.84385 4.91147 5.00679 5.02567 5.07704 5.11501 5.16160 5.28926 5.30131 5.38792 5.45454 5.61842 5.66005 5.72175 5.81312 5.84412 6.15432 6.22606 6.30884 6.57145 6.83196 7.35541 8.90009 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016604 B = 0.005933 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.889511 B = 4718.023370 C = 5722.946795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.104 4.104 3 C -0.133 4.133 4 C -0.120 4.120 5 C -0.133 4.133 6 C -0.067 4.067 7 C 0.120 3.880 8 N -0.668 5.668 9 C 0.094 3.906 10 C 0.037 3.963 11 C -0.543 4.543 12 H 0.055 0.945 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.964 3.036 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.275 1.275 19 C -0.116 4.116 20 C -0.132 4.132 21 C -0.172 4.172 22 C -0.118 4.118 23 H 0.080 0.920 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.141 0.859 27 H 0.148 0.852 28 H 0.140 0.860 29 H 0.343 0.657 30 H 0.050 0.950 31 H 0.015 0.985 32 H -0.009 1.009 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.051 0.949 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.081 13.749 -11.189 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.104 4.104 3 C -0.150 4.150 4 C -0.138 4.138 5 C -0.151 4.151 6 C -0.068 4.068 7 C 0.028 3.972 8 N -0.298 5.298 9 C -0.035 4.035 10 C 0.000 4.000 11 C -0.581 4.581 12 H 0.073 0.927 13 C -0.195 4.195 14 N -0.570 5.570 15 Si 0.788 3.212 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.200 1.200 19 C -0.154 4.154 20 C -0.169 4.169 21 C -0.211 4.211 22 C -0.136 4.136 23 H 0.099 0.901 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.159 0.841 27 H 0.166 0.834 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.009 0.991 33 H 0.011 0.989 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.352 13.842 -11.357 19.356 hybrid contribution 0.273 -0.745 1.434 1.639 sum 7.626 13.098 -9.923 18.115 Atomic orbital electron populations 1.20799 0.90531 1.02777 1.02817 1.20237 0.97063 0.93336 0.99790 1.21285 0.94829 0.97547 1.01380 1.21390 0.94285 0.98488 0.99604 1.21228 1.00665 0.91554 1.01667 1.19688 0.93443 0.94266 0.99356 1.21031 0.89801 0.89078 0.97303 1.60315 1.50303 1.04188 1.14991 1.21643 0.96870 0.98890 0.86081 1.18867 0.93894 0.92988 0.94299 1.21591 1.30091 1.10707 0.95750 0.92695 1.25933 0.95322 0.94709 1.03510 1.70110 1.33468 1.15256 1.38163 0.85415 0.78132 0.78455 0.79157 1.18831 1.20190 1.20044 1.23106 0.95850 1.01900 0.94526 1.22836 0.98923 0.98822 0.96349 1.23781 0.97050 1.01644 0.98623 1.21040 0.94606 0.97651 1.00296 0.90114 0.93087 0.90146 0.84102 0.83380 0.84287 0.83864 0.93160 0.96637 0.99051 0.98889 0.92697 0.91078 0.88170 0.89009 0.90683 0.87806 0.93042 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.83 10.01 71.23 0.71 -2.12 16 2 C -0.10 -3.04 5.88 -19.87 -0.12 -3.15 16 3 C -0.13 -3.20 9.70 22.27 0.22 -2.99 16 4 C -0.12 -2.69 10.05 22.27 0.22 -2.47 16 5 C -0.13 -3.34 9.24 22.27 0.21 -3.13 16 6 C -0.07 -2.05 4.54 -19.87 -0.09 -2.14 16 7 C 0.12 3.55 1.01 3.30 0.00 3.55 16 8 N -0.67 -24.65 5.49 -471.26 -2.59 -27.24 16 9 C 0.09 4.17 5.09 86.31 0.44 4.61 16 10 C 0.04 2.04 5.27 29.85 0.16 2.20 16 11 C -0.54 -32.04 9.11 25.60 0.23 -31.81 16 12 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 13 C 0.00 0.20 5.46 84.66 0.46 0.66 16 14 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 15 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 16 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 C -0.12 -2.72 7.33 31.21 0.23 -2.49 16 20 C -0.13 -2.82 7.75 31.21 0.24 -2.58 16 21 C -0.17 -4.39 6.94 31.12 0.22 -4.18 16 22 C -0.12 -4.00 7.94 22.27 0.18 -3.82 16 23 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.05 1.46 8.09 -2.39 -0.02 1.44 16 25 H 0.08 1.69 8.09 -2.38 -0.02 1.67 16 26 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 27 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.14 2.80 5.94 -2.91 -0.02 2.79 16 29 H 0.34 12.12 7.94 -89.70 -0.71 11.41 16 30 H 0.05 2.34 6.55 -2.39 -0.02 2.33 16 31 H 0.02 0.69 6.76 -2.39 -0.02 0.67 16 32 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.10 2.03 8.09 -2.39 -0.02 2.01 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.69 7.73 -2.39 -0.02 1.67 16 39 H 0.10 2.22 5.78 -2.38 -0.01 2.21 16 40 H 0.05 1.53 6.70 -2.39 -0.02 1.51 16 41 H 0.10 4.12 7.44 -2.91 -0.02 4.10 16 Total: -1.00 -67.09 326.96 3.33 -63.76 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.29 Total: 23.45 kcal Atomic # 6 Polarization: -53.16 SS G_CDS: 3.31 Total: -49.84 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -2.30 Total: -84.64 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.09 3.33 -63.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592145776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.386 kcal (2) G-P(sol) polarization free energy of solvation -67.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds