Wall clock time and date at job start Mon Mar 30 2020 07:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38242 * 119.99875 * 2 1 4 4 C 1.38240 * 119.99843 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99895 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99702 * 179.97438 * 5 4 3 7 7 N 1.46904 * 112.84957 * 154.92843 * 6 5 4 8 8 C 1.46898 * 110.99607 * 293.96713 * 7 6 5 9 9 C 1.53008 * 109.47030 * 175.09506 * 8 7 6 10 10 C 1.50694 * 109.47394 * 179.97438 * 9 8 7 11 11 H 1.08008 * 120.00118 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00447 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99672 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00519 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46924 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47235 * 119.99953 * 14 12 10 17 17 H 1.48501 * 109.47305 * 239.99834 * 14 12 10 18 18 C 1.53774 * 113.61291 * 286.12097 * 6 5 4 19 19 C 1.54050 * 86.98558 * 140.02105 * 18 6 5 20 20 C 1.53776 * 87.07779 * 334.56838 * 19 18 6 21 21 C 1.38236 * 120.00139 * 0.25162 * 5 4 3 22 22 C 1.38231 * 119.99881 * 359.49274 * 21 5 4 23 23 H 1.09006 * 109.46788 * 90.00403 * 1 2 3 24 24 H 1.08996 * 109.47230 * 210.00109 * 1 2 3 25 25 H 1.08998 * 109.47055 * 330.00262 * 1 2 3 26 26 H 1.07997 * 119.99873 * 359.97438 * 3 2 1 27 27 H 1.07997 * 119.99802 * 180.02562 * 4 3 2 28 28 H 1.00895 * 110.99702 * 170.01714 * 7 6 5 29 29 H 1.08993 * 109.47414 * 55.09905 * 8 7 6 30 30 H 1.09004 * 109.47473 * 295.09051 * 8 7 6 31 31 H 1.09002 * 109.47001 * 59.99982 * 9 8 7 32 32 H 1.09004 * 109.47083 * 300.00333 * 9 8 7 33 33 H 0.96995 * 120.00387 * 180.02562 * 13 12 10 34 34 H 1.09000 * 113.61617 * 254.61534 * 18 6 5 35 35 H 1.09005 * 113.61754 * 25.51912 * 18 6 5 36 36 H 1.09003 * 113.62125 * 220.01988 * 19 18 6 37 37 H 1.08997 * 113.68810 * 89.12832 * 19 18 6 38 38 H 1.09003 * 113.61871 * 270.87936 * 20 19 18 39 39 H 1.09000 * 113.69484 * 139.98319 * 20 19 18 40 40 H 1.08003 * 119.99820 * 179.73470 * 21 5 4 41 41 H 1.08003 * 120.00171 * 180.25661 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0001 0.0005 7 7 6.3492 -1.2261 0.5742 8 6 6.0402 -1.3303 2.0065 9 6 6.5430 -2.6733 2.5403 10 6 6.2266 -2.7800 4.0098 11 1 5.7174 -1.9711 4.5127 12 6 6.5870 -3.9103 4.7123 13 7 7.2066 -4.8955 4.0998 14 14 6.1942 -4.0429 6.5337 15 1 5.4980 -2.8098 6.9810 16 1 5.3180 -5.2190 6.7667 17 1 7.4550 -4.2052 7.3015 18 6 6.3947 0.3914 -1.3531 19 6 7.4423 1.1892 -0.5537 20 6 6.3948 1.2900 0.5675 21 6 3.5806 -1.1971 -0.0053 22 6 2.1983 -1.1971 -0.0005 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6582 2.1325 -0.0004 27 1 4.1205 2.1325 0.0010 28 1 7.3445 -1.2707 0.4148 29 1 4.9621 -1.2624 2.1515 30 1 6.5310 -0.5190 2.5442 31 1 7.6211 -2.7412 2.3953 32 1 6.0522 -3.4846 2.0027 33 1 7.4599 -5.6908 4.5938 34 1 6.8124 -0.4521 -1.9028 35 1 5.7437 1.0161 -1.9648 36 1 7.6954 2.1498 -1.0024 37 1 8.3211 0.6057 -0.2791 38 1 5.7438 2.1599 0.4801 39 1 6.8111 1.1719 1.5679 40 1 4.1206 -2.1324 -0.0096 41 1 1.6582 -2.1324 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592187856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:16 Heat of formation + Delta-G solvation = 32.020754 kcal Electronic energy + Delta-G solvation = -19252.059725 eV Core-core repulsion = 16517.656673 eV Total energy + Delta-G solvation = -2734.403052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.31892 -38.13121 -34.35472 -32.63897 -32.25938 -30.61548 -28.82896 -27.21877 -25.72648 -24.31643 -23.20221 -22.29928 -20.84288 -20.43994 -18.51439 -16.76739 -16.17170 -15.51922 -14.94335 -14.82513 -14.63211 -14.31827 -13.76337 -13.57771 -13.26804 -13.12379 -13.05494 -12.46875 -12.24027 -12.08175 -12.01637 -11.46849 -11.36869 -11.12591 -10.92679 -10.89962 -10.58914 -10.49079 -10.38313 -10.09935 -9.89457 -9.36159 -9.10725 -8.63181 -8.34407 -8.18338 -7.81053 -5.98215 -4.00243 1.56067 1.69050 3.32065 3.39485 3.43902 3.96361 4.40848 4.58120 4.70376 4.82511 4.84345 5.02345 5.07296 5.15412 5.27355 5.38007 5.44616 5.52009 5.59687 5.73100 5.76329 5.82192 5.85835 5.96772 6.02652 6.08648 6.17199 6.24813 6.36227 6.38851 6.45573 6.52538 6.67746 6.84456 6.95467 7.03836 7.29266 7.52563 7.74962 7.84052 7.99006 8.10153 8.46183 9.07199 9.63518 11.13270 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.005678 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.817287 B = 4929.790379 C = 6096.533960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.119 4.119 5 C -0.060 4.060 6 C 0.135 3.865 7 N -0.663 5.663 8 C 0.066 3.934 9 C 0.028 3.972 10 C -0.518 4.518 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.126 4.126 19 C -0.143 4.143 20 C -0.175 4.175 21 C -0.083 4.083 22 C -0.124 4.124 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.340 0.660 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.013 0.987 32 H 0.024 0.976 33 H 0.259 0.741 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.137 0.863 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.212 12.533 -11.253 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.061 4.061 6 C 0.043 3.957 7 N -0.293 5.293 8 C -0.062 4.062 9 C -0.010 4.010 10 C -0.557 4.557 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.718 3.282 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.164 4.164 19 C -0.180 4.180 20 C -0.215 4.215 21 C -0.101 4.101 22 C -0.142 4.142 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.159 0.841 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.155 0.845 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.663 11.940 -11.404 18.203 hybrid contribution 0.471 0.524 1.513 1.669 sum -7.193 12.464 -9.891 17.462 Atomic orbital electron populations 1.20753 0.91729 1.02493 1.01825 1.19865 0.95701 0.93393 1.00689 1.20862 0.93992 0.97153 1.02620 1.20977 0.93963 0.97544 1.01201 1.19527 0.94041 0.93035 0.99489 1.20813 0.90354 0.89147 0.95419 1.60483 1.18089 1.33293 1.17425 1.22181 1.00354 0.99759 0.83894 1.19046 0.96189 0.90705 0.95045 1.21206 1.37695 1.02350 0.94493 0.92816 1.24983 0.95234 0.95809 0.98262 1.69981 1.40478 1.06844 1.35986 0.86564 0.78039 0.78025 0.85545 1.19787 1.20970 1.21041 1.23125 0.97638 0.99885 0.95747 1.22872 0.97160 1.00414 0.97561 1.23779 0.98854 0.99576 0.99243 1.21236 0.93439 0.98989 0.96445 1.21088 0.94491 0.97280 1.01380 0.91616 0.91682 0.91944 0.86700 0.86354 0.84147 0.91983 0.96493 0.96901 0.95740 0.93089 0.90676 0.89891 0.91579 0.90158 0.89814 0.90987 0.84533 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 2 C -0.10 -1.27 5.88 -104.62 -0.62 -1.88 16 3 C -0.13 -1.65 9.70 -39.58 -0.38 -2.03 16 4 C -0.12 -1.62 9.24 -39.58 -0.37 -1.98 16 5 C -0.06 -0.93 4.54 -104.62 -0.47 -1.40 16 6 C 0.14 2.01 1.01 -131.94 -0.13 1.88 16 7 N -0.66 -11.72 5.49 -100.31 -0.55 -12.27 16 8 C 0.07 1.40 5.09 -3.82 -0.02 1.38 16 9 C 0.03 0.72 5.27 -27.88 -0.15 0.58 16 10 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 11 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 14 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 C -0.13 -1.57 7.33 -25.78 -0.19 -1.76 16 19 C -0.14 -1.67 7.75 -25.78 -0.20 -1.87 16 20 C -0.18 -2.37 6.94 -25.92 -0.18 -2.55 16 21 C -0.08 -1.36 8.29 -39.58 -0.33 -1.68 16 22 C -0.12 -1.82 9.70 -39.59 -0.38 -2.20 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.12 1.40 5.94 -52.49 -0.31 1.08 16 28 H 0.34 5.77 7.94 -39.29 -0.31 5.45 16 29 H 0.06 1.38 6.55 -51.93 -0.34 1.04 16 30 H 0.02 0.36 6.76 -51.93 -0.35 0.01 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.95 7.73 -51.93 -0.40 0.55 16 38 H 0.08 1.02 5.78 -51.93 -0.30 0.72 16 39 H 0.07 1.09 6.70 -51.93 -0.35 0.74 16 40 H 0.14 2.43 7.44 -52.48 -0.39 2.04 16 41 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 326.96 15.07 4.93 4.93 Total: -1.00 -30.28 326.96 -9.89 -40.18 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.52 Total: 4.48 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -3.47 Total: -27.88 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.19 Total: -38.61 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.28 -9.89 -40.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592187856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.200 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds