Wall clock time and date at job start Mon Mar 30 2020 07:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38242 * 119.99875 * 2 1 4 4 C 1.38240 * 119.99843 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99895 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99702 * 179.97438 * 5 4 3 7 7 N 1.46904 * 112.84957 * 154.92843 * 6 5 4 8 8 C 1.46898 * 110.99607 * 293.96713 * 7 6 5 9 9 C 1.53008 * 109.47030 * 175.09506 * 8 7 6 10 10 C 1.50694 * 109.47394 * 179.97438 * 9 8 7 11 11 H 1.08008 * 120.00118 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00447 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99672 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00519 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46924 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47235 * 119.99953 * 14 12 10 17 17 H 1.48501 * 109.47305 * 239.99834 * 14 12 10 18 18 C 1.53774 * 113.61291 * 286.12097 * 6 5 4 19 19 C 1.54050 * 86.98558 * 140.02105 * 18 6 5 20 20 C 1.53776 * 87.07779 * 334.56838 * 19 18 6 21 21 C 1.38236 * 120.00139 * 0.25162 * 5 4 3 22 22 C 1.38231 * 119.99881 * 359.49274 * 21 5 4 23 23 H 1.09006 * 109.46788 * 90.00403 * 1 2 3 24 24 H 1.08996 * 109.47230 * 210.00109 * 1 2 3 25 25 H 1.08998 * 109.47055 * 330.00262 * 1 2 3 26 26 H 1.07997 * 119.99873 * 359.97438 * 3 2 1 27 27 H 1.07997 * 119.99802 * 180.02562 * 4 3 2 28 28 H 1.00895 * 110.99702 * 170.01714 * 7 6 5 29 29 H 1.08993 * 109.47414 * 55.09905 * 8 7 6 30 30 H 1.09004 * 109.47473 * 295.09051 * 8 7 6 31 31 H 1.09002 * 109.47001 * 59.99982 * 9 8 7 32 32 H 1.09004 * 109.47083 * 300.00333 * 9 8 7 33 33 H 0.96995 * 120.00387 * 180.02562 * 13 12 10 34 34 H 1.09000 * 113.61617 * 254.61534 * 18 6 5 35 35 H 1.09005 * 113.61754 * 25.51912 * 18 6 5 36 36 H 1.09003 * 113.62125 * 220.01988 * 19 18 6 37 37 H 1.08997 * 113.68810 * 89.12832 * 19 18 6 38 38 H 1.09003 * 113.61871 * 270.87936 * 20 19 18 39 39 H 1.09000 * 113.69484 * 139.98319 * 20 19 18 40 40 H 1.08003 * 119.99820 * 179.73470 * 21 5 4 41 41 H 1.08003 * 120.00171 * 180.25661 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0001 0.0005 7 7 6.3492 -1.2261 0.5742 8 6 6.0402 -1.3303 2.0065 9 6 6.5430 -2.6733 2.5403 10 6 6.2266 -2.7800 4.0098 11 1 5.7174 -1.9711 4.5127 12 6 6.5870 -3.9103 4.7123 13 7 7.2066 -4.8955 4.0998 14 14 6.1942 -4.0429 6.5337 15 1 5.4980 -2.8098 6.9810 16 1 5.3180 -5.2190 6.7667 17 1 7.4550 -4.2052 7.3015 18 6 6.3947 0.3914 -1.3531 19 6 7.4423 1.1892 -0.5537 20 6 6.3948 1.2900 0.5675 21 6 3.5806 -1.1971 -0.0053 22 6 2.1983 -1.1971 -0.0005 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6582 2.1325 -0.0004 27 1 4.1205 2.1325 0.0010 28 1 7.3445 -1.2707 0.4148 29 1 4.9621 -1.2624 2.1515 30 1 6.5310 -0.5190 2.5442 31 1 7.6211 -2.7412 2.3953 32 1 6.0522 -3.4846 2.0027 33 1 7.4599 -5.6908 4.5938 34 1 6.8124 -0.4521 -1.9028 35 1 5.7437 1.0161 -1.9648 36 1 7.6954 2.1498 -1.0024 37 1 8.3211 0.6057 -0.2791 38 1 5.7438 2.1599 0.4801 39 1 6.8111 1.1719 1.5679 40 1 4.1206 -2.1324 -0.0096 41 1 1.6582 -2.1324 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592187856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:15 Heat of formation + Delta-G solvation = 15.611654 kcal Electronic energy + Delta-G solvation = -19252.771277 eV Core-core repulsion = 16517.656673 eV Total energy + Delta-G solvation = -2735.114604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45363 -39.20783 -36.18058 -34.35859 -33.49980 -31.74132 -30.64376 -28.29427 -26.86545 -26.08287 -24.44548 -23.39351 -22.39354 -21.85166 -19.68927 -18.54804 -17.69156 -16.85218 -16.44867 -16.12045 -15.92960 -15.63935 -15.01756 -14.89819 -14.61837 -14.41307 -14.20613 -13.93962 -13.50693 -13.37644 -13.16944 -12.95747 -12.88590 -12.55993 -12.48718 -12.33215 -11.98578 -11.90769 -11.61238 -11.43821 -11.38837 -11.27797 -11.05470 -10.58269 -9.73695 -9.32000 -9.20341 -8.22114 -6.33380 0.48593 0.58718 1.37768 1.38304 1.51653 2.38487 2.87879 3.11203 3.19584 3.62933 3.77847 3.81563 4.04219 4.06043 4.12544 4.24760 4.39260 4.50907 4.56539 4.60592 4.68523 4.80449 4.81604 4.86884 4.96225 5.02142 5.02758 5.08409 5.12220 5.16485 5.25502 5.33096 5.36800 5.45635 5.57233 5.66834 5.75544 5.78082 5.84194 6.15518 6.21422 6.31085 6.57428 6.83398 7.35766 8.90252 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.005678 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.817287 B = 4929.790379 C = 6096.533960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C -0.127 4.127 4 C -0.120 4.120 5 C -0.076 4.076 6 C 0.121 3.879 7 N -0.668 5.668 8 C 0.093 3.907 9 C 0.037 3.963 10 C -0.543 4.543 11 H 0.055 0.945 12 C 0.003 3.997 13 N -0.930 5.930 14 Si 0.964 3.036 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.275 1.275 18 C -0.116 4.116 19 C -0.132 4.132 20 C -0.172 4.172 21 C -0.111 4.111 22 C -0.139 4.139 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.343 0.657 29 H 0.050 0.950 30 H 0.016 0.984 31 H -0.009 1.009 32 H -0.007 1.007 33 H 0.264 0.736 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 14.944 -11.153 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.077 4.077 6 C 0.029 3.971 7 N -0.298 5.298 8 C -0.036 4.036 9 C -0.001 4.001 10 C -0.581 4.581 11 H 0.073 0.927 12 C -0.195 4.195 13 N -0.570 5.570 14 Si 0.789 3.211 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.201 1.201 18 C -0.154 4.154 19 C -0.169 4.169 20 C -0.211 4.211 21 C -0.129 4.129 22 C -0.157 4.157 23 H 0.099 0.901 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.164 0.836 27 H 0.159 0.841 28 H 0.161 0.839 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.010 0.990 32 H 0.011 0.989 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.125 0.875 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.820 14.364 -11.321 20.305 hybrid contribution 0.797 -0.239 1.420 1.646 sum -8.024 14.125 -9.901 19.024 Atomic orbital electron populations 1.20804 0.89365 1.03361 1.03062 1.20244 0.97494 0.92828 0.99397 1.21273 0.93887 0.98260 1.01079 1.21234 0.94604 0.97503 1.00485 1.19667 0.94259 0.93447 1.00323 1.21017 0.90425 0.88417 0.97265 1.60318 1.18396 1.36097 1.14992 1.21650 0.99105 0.96695 0.86101 1.18874 0.94462 0.92453 0.94307 1.21586 1.38013 1.02760 0.95744 0.92699 1.25932 0.94770 0.95251 1.03509 1.70108 1.41276 1.07488 1.38160 0.85412 0.78190 0.78376 0.79152 1.18822 1.20219 1.20053 1.23108 0.97735 1.00013 0.94550 1.22833 0.96330 1.01418 0.96350 1.23782 0.99530 0.99185 0.98623 1.21132 0.94391 0.98450 0.98925 1.21250 0.93993 0.98580 1.01912 0.90086 0.91610 0.90317 0.83601 0.84149 0.83858 0.93107 0.96603 0.99030 0.98903 0.92702 0.91079 0.88181 0.89020 0.90690 0.87826 0.93036 0.87511 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 10.01 71.24 0.71 -1.20 16 2 C -0.10 -2.45 5.88 -19.86 -0.12 -2.57 16 3 C -0.13 -2.91 9.70 22.27 0.22 -2.70 16 4 C -0.12 -3.02 9.24 22.27 0.21 -2.81 16 5 C -0.08 -2.33 4.54 -19.87 -0.09 -2.42 16 6 C 0.12 3.56 1.01 3.30 0.00 3.57 16 7 N -0.67 -24.61 5.49 -471.27 -2.59 -27.19 16 8 C 0.09 4.14 5.09 86.31 0.44 4.58 16 9 C 0.04 2.02 5.27 29.85 0.16 2.17 16 10 C -0.54 -32.02 9.11 25.60 0.23 -31.78 16 11 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 12 C 0.00 0.20 5.46 84.65 0.46 0.66 16 13 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 14 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 15 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 18 C -0.12 -2.72 7.33 31.21 0.23 -2.49 16 19 C -0.13 -2.82 7.75 31.21 0.24 -2.57 16 20 C -0.17 -4.39 6.94 31.12 0.22 -4.17 16 21 C -0.11 -3.76 8.29 22.27 0.18 -3.58 16 22 C -0.14 -4.13 9.70 22.27 0.22 -3.91 16 23 H 0.08 1.19 8.14 -2.38 -0.02 1.18 16 24 H 0.06 1.14 8.09 -2.39 -0.02 1.13 16 25 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 26 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 27 H 0.14 2.82 5.94 -2.91 -0.02 2.80 16 28 H 0.34 12.10 7.94 -89.70 -0.71 11.39 16 29 H 0.05 2.36 6.55 -2.39 -0.02 2.35 16 30 H 0.02 0.70 6.76 -2.38 -0.02 0.68 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 33 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.10 2.02 8.09 -2.38 -0.02 2.00 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.69 7.73 -2.39 -0.02 1.67 16 38 H 0.10 2.21 5.78 -2.39 -0.01 2.19 16 39 H 0.05 1.53 6.70 -2.39 -0.02 1.51 16 40 H 0.11 4.16 7.44 -2.91 -0.02 4.14 16 41 H 0.12 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -67.06 326.96 3.33 -63.73 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.29 Total: 22.86 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 3.31 Total: -49.23 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -2.30 Total: -84.66 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.06 3.33 -63.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592187856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.339 kcal (2) G-P(sol) polarization free energy of solvation -67.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds