Wall clock time and date at job start Mon Mar 30 2020 07:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 119.99916 * 2 1 4 4 C 1.38213 * 119.99506 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.00592 * 359.96774 * 4 3 2 6 6 C 1.38223 * 119.99425 * 359.75395 * 5 4 3 7 7 C 1.38210 * 119.99603 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00419 * 0.02562 * 7 2 1 9 9 N 1.46901 * 112.90595 * 292.11572 * 8 7 2 10 10 C 1.46893 * 110.99906 * 305.68074 * 9 8 7 11 11 C 1.53005 * 109.46794 * 181.46566 * 10 9 8 12 12 C 1.50702 * 109.46715 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00544 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99728 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99983 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99994 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47682 * 90.00022 * 16 14 12 18 18 H 1.48503 * 109.46899 * 210.00213 * 16 14 12 19 19 H 1.48506 * 109.47002 * 329.99703 * 16 14 12 20 20 C 1.53785 * 113.61193 * 63.36091 * 8 7 2 21 21 C 1.53781 * 87.07978 * 139.98279 * 20 8 7 22 22 C 1.53771 * 113.61623 * 160.86083 * 8 7 2 23 23 H 1.08999 * 109.47013 * 264.03285 * 1 2 3 24 24 H 1.09002 * 109.46992 * 24.03194 * 1 2 3 25 25 H 1.08996 * 109.47105 * 144.02957 * 1 2 3 26 26 H 1.08000 * 120.00076 * 359.96910 * 3 2 1 27 27 H 1.08005 * 119.99844 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.00285 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.99497 * 180.27088 * 6 5 4 30 30 H 1.00902 * 110.99751 * 181.71982 * 9 8 7 31 31 H 1.09002 * 109.47027 * 301.45989 * 10 9 8 32 32 H 1.08994 * 109.47570 * 61.46305 * 10 9 8 33 33 H 1.09002 * 109.46862 * 299.99524 * 11 10 9 34 34 H 1.08999 * 109.47680 * 59.99782 * 11 10 9 35 35 H 0.97006 * 119.99565 * 179.97438 * 15 14 12 36 36 H 1.09009 * 113.61066 * 25.43856 * 20 8 7 37 37 H 1.08997 * 113.61769 * 254.53061 * 20 8 7 38 38 H 1.08995 * 113.61655 * 89.11540 * 21 20 8 39 39 H 1.09001 * 113.61539 * 220.02351 * 21 20 8 40 40 H 1.09001 * 113.61587 * 105.47281 * 22 8 7 41 41 H 1.09005 * 113.61654 * 334.57086 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2718 0.0000 -0.0004 6 6 3.5806 -1.1970 0.0054 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 7 0.7170 -2.7423 1.2539 10 6 1.6166 -2.6475 2.4113 11 6 0.8321 -2.9389 3.6922 12 6 1.7552 -2.8422 4.8794 13 1 2.7970 -2.5971 4.7350 14 6 1.2695 -3.0658 6.1503 15 7 0.0007 -3.3639 6.3263 16 14 2.4135 -2.9453 7.6221 17 1 2.4141 -1.5521 8.1360 18 1 1.9460 -3.8663 8.6891 19 1 3.7900 -3.3220 7.2112 20 6 0.5899 -2.7199 -1.2593 21 6 1.0420 -4.1892 -1.2163 22 6 2.2894 -3.7012 -0.4608 23 1 -0.3633 -0.1068 1.0221 24 1 -0.3633 0.9386 -0.4185 25 1 -0.3633 -0.8317 -0.6036 26 1 1.6583 2.1327 -0.0005 27 1 4.1205 2.1326 -0.0010 28 1 5.3518 0.0000 -0.0012 29 1 4.1206 -2.1323 0.0099 30 1 0.2465 -3.6347 1.2336 31 1 2.4224 -3.3739 2.3055 32 1 2.0372 -1.6433 2.4633 33 1 0.0263 -2.2125 3.7979 34 1 0.4115 -3.9431 3.6402 35 1 -0.3409 -3.5215 7.2204 36 1 0.9525 -2.1769 -2.1321 37 1 -0.4787 -2.5868 -1.0904 38 1 0.3922 -4.8287 -0.6189 39 1 1.2621 -4.6072 -2.1986 40 1 2.5929 -4.3603 0.3526 41 1 3.1167 -3.4265 -1.1154 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593039438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:18 Heat of formation + Delta-G solvation = 33.483663 kcal Electronic energy + Delta-G solvation = -19656.901528 eV Core-core repulsion = 16922.561912 eV Total energy + Delta-G solvation = -2734.339616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.45362 -37.93359 -34.33485 -32.61196 -32.28929 -30.82710 -28.64822 -26.84881 -25.67286 -24.62031 -23.54662 -21.89905 -20.79815 -20.29739 -18.61267 -16.63945 -16.16110 -15.51642 -15.34309 -14.88633 -14.60400 -14.34875 -13.76586 -13.36077 -13.18253 -13.12866 -12.79020 -12.26467 -12.13914 -11.88128 -11.76868 -11.67510 -11.36600 -11.09688 -10.90786 -10.84654 -10.74716 -10.50145 -10.23302 -10.08183 -9.89571 -9.33070 -9.14068 -8.55809 -8.33594 -8.29208 -7.76332 -5.98029 -3.99990 1.59742 1.64033 3.33333 3.39233 3.42652 3.97491 4.41902 4.57039 4.69704 4.82928 4.86670 5.02625 5.14564 5.21312 5.27904 5.38129 5.48698 5.61680 5.73599 5.78150 5.81540 5.93108 5.98092 6.03242 6.12794 6.15073 6.21539 6.26973 6.37541 6.45945 6.52783 6.58830 6.70365 6.72280 6.97651 7.03528 7.25586 7.52228 7.74943 7.85721 7.98854 8.10324 8.46566 9.07098 9.63623 11.13438 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.005876 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.640264 B = 4764.377606 C = 5399.053586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.056 4.056 3 C -0.128 4.128 4 C -0.122 4.122 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.055 4.055 8 C 0.138 3.862 9 N -0.658 5.658 10 C 0.070 3.930 11 C 0.026 3.974 12 C -0.519 4.519 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.127 4.127 21 C -0.142 4.142 22 C -0.175 4.175 23 H 0.081 0.919 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.339 0.661 31 H 0.015 0.985 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.012 0.988 35 H 0.260 0.740 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.576 4.211 -16.849 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.150 4.150 6 C -0.129 4.129 7 C -0.056 4.056 8 C 0.046 3.954 9 N -0.288 5.288 10 C -0.057 4.057 11 C -0.011 4.011 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.165 4.165 21 C -0.179 4.179 22 C -0.215 4.215 23 H 0.100 0.900 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.158 0.842 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.206 4.812 -16.632 17.609 hybrid contribution 1.264 -0.768 0.943 1.754 sum 4.470 4.044 -15.689 16.808 Atomic orbital electron populations 1.20908 0.90921 1.01540 1.03751 1.19747 0.96476 0.92074 0.97389 1.21010 0.94193 0.97416 1.01979 1.21039 0.94356 0.97736 1.00895 1.21009 0.99450 0.92574 1.01943 1.21034 0.93759 0.97999 1.00108 1.19359 0.92835 0.93680 0.99699 1.20809 0.92703 0.90574 0.91302 1.60565 1.29994 1.38055 1.00217 1.22100 0.93913 0.99656 0.90066 1.19063 0.95597 0.96910 0.89536 1.21165 0.95684 1.47463 0.91456 0.92848 1.24986 0.95037 0.95327 0.98943 1.69975 1.13221 1.48040 1.22085 0.86614 0.81069 0.77929 0.82513 1.20629 1.21215 1.19942 1.23111 1.00420 0.95936 0.97020 1.22812 0.97959 0.96717 1.00462 1.23747 0.97655 0.99397 1.00652 0.90003 0.93109 0.90640 0.86473 0.86635 0.86589 0.86364 0.84220 0.96685 0.92162 0.95748 0.96951 0.93041 0.90031 0.90390 0.90096 0.91636 0.91245 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.17 36.01 0.33 -1.26 16 2 C -0.06 -0.85 5.84 -104.62 -0.61 -1.46 16 3 C -0.13 -1.77 9.68 -39.58 -0.38 -2.15 16 4 C -0.12 -1.60 10.05 -39.59 -0.40 -1.99 16 5 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 6 C -0.11 -1.62 9.04 -39.58 -0.36 -1.98 16 7 C -0.06 -0.84 3.59 -104.63 -0.38 -1.22 16 8 C 0.14 2.02 0.35 -131.94 -0.05 1.98 16 9 N -0.66 -11.53 6.04 -100.32 -0.61 -12.14 16 10 C 0.07 1.51 5.20 -3.83 -0.02 1.49 16 11 C 0.03 0.69 5.22 -27.88 -0.15 0.55 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 16 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.13 -1.55 5.65 -25.92 -0.15 -1.69 16 21 C -0.14 -1.64 7.73 -25.92 -0.20 -1.84 16 22 C -0.17 -2.32 6.24 -25.92 -0.16 -2.48 16 23 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.05 0.59 8.05 -51.93 -0.42 0.17 16 25 H 0.07 0.98 4.66 -51.93 -0.24 0.74 16 26 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 28 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.62 6.53 -52.48 -0.34 1.27 16 30 H 0.34 5.75 7.86 -39.29 -0.31 5.44 16 31 H 0.01 0.32 7.34 -51.93 -0.38 -0.06 16 32 H 0.06 1.37 7.20 -51.93 -0.37 1.00 16 33 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.08 0.93 8.09 -51.92 -0.42 0.51 16 37 H 0.08 0.94 7.08 -51.93 -0.37 0.57 16 38 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.01 7.45 -51.93 -0.39 0.62 16 41 H 0.08 1.00 6.92 -51.93 -0.36 0.64 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -30.43 324.20 -9.83 -40.25 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.50 Total: 4.34 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: -3.32 Total: -27.91 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.13 Total: -38.57 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.43 -9.83 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593039438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.738 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds