Wall clock time and date at job start Mon Mar 30 2020 07:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 119.99916 * 2 1 4 4 C 1.38213 * 119.99506 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.00592 * 359.96774 * 4 3 2 6 6 C 1.38223 * 119.99425 * 359.75395 * 5 4 3 7 7 C 1.38210 * 119.99603 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00419 * 0.02562 * 7 2 1 9 9 N 1.46901 * 112.90595 * 292.11572 * 8 7 2 10 10 C 1.46893 * 110.99906 * 305.68074 * 9 8 7 11 11 C 1.53005 * 109.46794 * 181.46566 * 10 9 8 12 12 C 1.50702 * 109.46715 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00544 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99728 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99983 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99994 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47682 * 90.00022 * 16 14 12 18 18 H 1.48503 * 109.46899 * 210.00213 * 16 14 12 19 19 H 1.48506 * 109.47002 * 329.99703 * 16 14 12 20 20 C 1.53785 * 113.61193 * 63.36091 * 8 7 2 21 21 C 1.53781 * 87.07978 * 139.98279 * 20 8 7 22 22 C 1.53771 * 113.61623 * 160.86083 * 8 7 2 23 23 H 1.08999 * 109.47013 * 264.03285 * 1 2 3 24 24 H 1.09002 * 109.46992 * 24.03194 * 1 2 3 25 25 H 1.08996 * 109.47105 * 144.02957 * 1 2 3 26 26 H 1.08000 * 120.00076 * 359.96910 * 3 2 1 27 27 H 1.08005 * 119.99844 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.00285 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.99497 * 180.27088 * 6 5 4 30 30 H 1.00902 * 110.99751 * 181.71982 * 9 8 7 31 31 H 1.09002 * 109.47027 * 301.45989 * 10 9 8 32 32 H 1.08994 * 109.47570 * 61.46305 * 10 9 8 33 33 H 1.09002 * 109.46862 * 299.99524 * 11 10 9 34 34 H 1.08999 * 109.47680 * 59.99782 * 11 10 9 35 35 H 0.97006 * 119.99565 * 179.97438 * 15 14 12 36 36 H 1.09009 * 113.61066 * 25.43856 * 20 8 7 37 37 H 1.08997 * 113.61769 * 254.53061 * 20 8 7 38 38 H 1.08995 * 113.61655 * 89.11540 * 21 20 8 39 39 H 1.09001 * 113.61539 * 220.02351 * 21 20 8 40 40 H 1.09001 * 113.61587 * 105.47281 * 22 8 7 41 41 H 1.09005 * 113.61654 * 334.57086 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2718 0.0000 -0.0004 6 6 3.5806 -1.1970 0.0054 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 7 0.7170 -2.7423 1.2539 10 6 1.6166 -2.6475 2.4113 11 6 0.8321 -2.9389 3.6922 12 6 1.7552 -2.8422 4.8794 13 1 2.7970 -2.5971 4.7350 14 6 1.2695 -3.0658 6.1503 15 7 0.0007 -3.3639 6.3263 16 14 2.4135 -2.9453 7.6221 17 1 2.4141 -1.5521 8.1360 18 1 1.9460 -3.8663 8.6891 19 1 3.7900 -3.3220 7.2112 20 6 0.5899 -2.7199 -1.2593 21 6 1.0420 -4.1892 -1.2163 22 6 2.2894 -3.7012 -0.4608 23 1 -0.3633 -0.1068 1.0221 24 1 -0.3633 0.9386 -0.4185 25 1 -0.3633 -0.8317 -0.6036 26 1 1.6583 2.1327 -0.0005 27 1 4.1205 2.1326 -0.0010 28 1 5.3518 0.0000 -0.0012 29 1 4.1206 -2.1323 0.0099 30 1 0.2465 -3.6347 1.2336 31 1 2.4224 -3.3739 2.3055 32 1 2.0372 -1.6433 2.4633 33 1 0.0263 -2.2125 3.7979 34 1 0.4115 -3.9431 3.6402 35 1 -0.3409 -3.5215 7.2204 36 1 0.9525 -2.1769 -2.1321 37 1 -0.4787 -2.5868 -1.0904 38 1 0.3922 -4.8287 -0.6189 39 1 1.2621 -4.6072 -2.1986 40 1 2.5929 -4.3603 0.3526 41 1 3.1167 -3.4265 -1.1154 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593039438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:18 Heat of formation + Delta-G solvation = 16.762018 kcal Electronic energy + Delta-G solvation = -19657.626633 eV Core-core repulsion = 16922.561912 eV Total energy + Delta-G solvation = -2735.064721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56903 -39.00730 -36.17266 -34.31982 -33.60131 -31.93325 -30.52348 -27.91794 -26.88233 -26.14987 -25.02242 -22.95958 -22.48301 -21.58078 -19.78355 -18.50637 -17.53979 -16.85410 -16.53058 -16.42647 -15.91655 -15.73494 -15.12672 -14.77359 -14.65208 -14.34248 -14.04143 -13.83013 -13.46388 -13.17600 -13.02944 -12.86281 -12.84351 -12.76180 -12.48511 -12.37427 -12.01796 -11.86233 -11.73464 -11.40082 -11.30728 -11.20512 -11.03945 -10.57791 -9.63894 -9.40797 -9.18637 -8.22036 -6.33166 0.52237 0.56293 1.37666 1.39309 1.50189 2.38505 2.88437 3.11223 3.26344 3.63334 3.77852 3.81764 3.96063 4.12859 4.18044 4.28118 4.40198 4.54368 4.57340 4.61504 4.72647 4.80605 4.83524 4.90303 4.97070 5.03305 5.06488 5.07503 5.11866 5.20573 5.25551 5.34362 5.45036 5.49365 5.60641 5.66516 5.69215 5.79554 5.88553 6.15210 6.21601 6.30758 6.58152 6.83331 7.35811 8.90006 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.005876 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.640264 B = 4764.377606 C = 5399.053586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.078 4.078 3 C -0.137 4.137 4 C -0.125 4.125 5 C -0.137 4.137 6 C -0.127 4.127 7 C -0.073 4.073 8 C 0.127 3.873 9 N -0.660 5.660 10 C 0.099 3.901 11 C 0.035 3.965 12 C -0.544 4.544 13 H 0.054 0.946 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.963 3.037 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.116 4.116 21 C -0.133 4.133 22 C -0.172 4.172 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.135 0.865 27 H 0.142 0.858 28 H 0.138 0.862 29 H 0.122 0.878 30 H 0.341 0.659 31 H 0.012 0.988 32 H 0.045 0.955 33 H -0.006 1.006 34 H -0.008 1.008 35 H 0.264 0.736 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 4.774 -17.714 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.078 4.078 3 C -0.155 4.155 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.145 4.145 7 C -0.074 4.074 8 C 0.035 3.965 9 N -0.290 5.290 10 C -0.030 4.030 11 C -0.002 4.002 12 C -0.583 4.583 13 H 0.073 0.927 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.189 1.189 20 C -0.154 4.154 21 C -0.170 4.170 22 C -0.212 4.212 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.153 0.847 27 H 0.160 0.840 28 H 0.156 0.844 29 H 0.140 0.860 30 H 0.160 0.840 31 H 0.030 0.970 32 H 0.064 0.936 33 H 0.012 0.988 34 H 0.011 0.989 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.525 5.374 -17.521 18.877 hybrid contribution 0.847 -0.906 1.176 1.709 sum 5.372 4.468 -16.345 17.776 Atomic orbital electron populations 1.20849 0.90628 1.02919 1.02190 1.19988 0.96990 0.92639 0.98191 1.21326 0.94886 0.97774 1.01480 1.21402 0.94295 0.98805 0.99812 1.21345 1.00730 0.92314 1.01101 1.21232 0.93763 0.98855 1.00651 1.19527 0.93345 0.93961 1.00545 1.20962 0.93771 0.91167 0.90563 1.60423 1.29731 1.38268 1.00545 1.21547 0.93377 0.98411 0.89618 1.18892 0.94869 0.94696 0.91761 1.21562 0.96109 1.47824 0.92763 0.92742 1.25924 0.96714 0.94595 1.02196 1.70101 1.15144 1.48607 1.23092 0.85479 0.79068 0.78295 0.78414 1.19776 1.20367 1.18888 1.23061 1.00067 0.96396 0.95838 1.22791 0.96636 0.96369 1.01247 1.23722 0.98636 0.98303 1.00516 0.92801 0.91098 0.90122 0.84706 0.83986 0.84393 0.85985 0.83965 0.96983 0.93602 0.98808 0.98927 0.92693 0.88754 0.90289 0.90337 0.89455 0.92987 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.00 9.17 71.24 0.65 -2.34 16 2 C -0.08 -2.28 5.84 -19.86 -0.12 -2.40 16 3 C -0.14 -3.58 9.68 22.27 0.22 -3.36 16 4 C -0.13 -3.02 10.05 22.27 0.22 -2.79 16 5 C -0.14 -3.45 10.05 22.27 0.22 -3.22 16 6 C -0.13 -3.59 9.04 22.27 0.20 -3.39 16 7 C -0.07 -2.20 3.59 -19.87 -0.07 -2.27 16 8 C 0.13 3.65 0.35 3.31 0.00 3.65 16 9 N -0.66 -23.61 6.04 -471.29 -2.85 -26.46 16 10 C 0.10 4.38 5.20 86.31 0.45 4.83 16 11 C 0.04 1.93 5.22 29.85 0.16 2.09 16 12 C -0.54 -32.06 9.11 25.60 0.23 -31.83 16 13 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 14 C 0.00 0.23 5.46 84.65 0.46 0.69 16 15 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 16 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 20 C -0.12 -2.65 5.65 31.12 0.18 -2.47 16 21 C -0.13 -2.84 7.73 31.12 0.24 -2.60 16 22 C -0.17 -4.40 6.24 31.12 0.19 -4.20 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.07 1.59 8.05 -2.39 -0.02 1.57 16 25 H 0.08 2.06 4.66 -2.39 -0.01 2.05 16 26 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 27 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 28 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.12 3.24 6.53 -2.91 -0.02 3.22 16 30 H 0.34 11.86 7.86 -89.69 -0.70 11.15 16 31 H 0.01 0.53 7.34 -2.39 -0.02 0.51 16 32 H 0.05 2.15 7.20 -2.39 -0.02 2.13 16 33 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 36 H 0.09 1.95 8.09 -2.38 -0.02 1.93 16 37 H 0.08 1.80 7.08 -2.39 -0.02 1.78 16 38 H 0.08 1.72 7.69 -2.39 -0.02 1.70 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 1.50 7.45 -2.39 -0.02 1.48 16 41 H 0.09 2.16 6.92 -2.38 -0.02 2.15 16 Total: -1.00 -66.01 324.20 3.01 -63.00 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.30 Total: 23.06 kcal Atomic # 6 Polarization: -52.85 SS G_CDS: 3.24 Total: -49.61 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.56 Total: -83.66 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -66.01 3.01 -63.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593039438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.759 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds