Wall clock time and date at job start Mon Mar 30 2020 06:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50703 * 109.47466 * 299.99910 * 4 2 1 6 6 H 1.07997 * 119.99722 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99873 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00416 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47184 * 90.00039 * 9 7 5 11 11 H 1.48498 * 109.47171 * 210.00013 * 9 7 5 12 12 H 1.48508 * 109.46868 * 330.00146 * 9 7 5 13 13 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 14 14 N 1.46905 * 109.46913 * 60.00285 * 13 2 1 15 15 C 1.47661 * 110.99805 * 266.31962 * 14 13 2 16 16 C 1.52649 * 87.64410 * 222.00052 * 15 14 13 17 17 C 1.52114 * 129.73614 * 246.27987 * 16 15 14 18 18 C 1.52117 * 129.73395 * 164.46881 * 16 15 14 19 19 F 1.39894 * 117.52504 * 226.40286 * 18 16 15 20 20 F 1.39906 * 117.51670 * 11.56023 * 18 16 15 21 21 C 1.47660 * 110.99786 * 169.99869 * 14 13 2 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 28 28 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 29 29 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 30 30 H 0.97001 * 120.00306 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47153 * 180.02562 * 13 2 1 32 32 H 1.08996 * 109.46952 * 300.00302 * 13 2 1 33 33 H 1.09002 * 113.52567 * 336.69477 * 15 14 13 34 34 H 1.08997 * 113.51887 * 107.31120 * 15 14 13 35 35 H 1.09000 * 117.51752 * 348.44886 * 17 16 15 36 36 H 1.09000 * 117.52577 * 133.54867 * 17 16 15 37 37 H 1.08995 * 113.52332 * 252.69251 * 21 14 13 38 38 H 1.09004 * 113.52141 * 23.23816 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4798 6 1 0.9171 0.8675 2.3806 7 6 1.8710 -0.4816 3.7320 8 7 2.6279 -1.5504 3.8527 9 14 1.2490 0.3994 5.2572 10 1 -0.0591 -0.1754 5.6620 11 1 2.2275 0.2287 6.3611 12 1 1.0840 1.8452 4.9610 13 6 2.0401 -0.7213 -1.2492 14 7 1.5504 -0.0287 -2.4487 15 6 0.2925 -0.6325 -2.9318 16 6 0.8454 -0.4978 -4.3482 17 6 0.3659 0.3715 -5.5007 18 6 0.3815 -1.1541 -5.6397 19 9 1.3594 -1.7180 -6.4659 20 9 -0.8502 -1.8175 -5.6215 21 6 2.2095 -0.5461 -3.6645 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 -1.7489 1.2493 29 1 3.1300 -0.7217 1.2491 30 1 2.8628 -1.8814 4.7337 31 1 3.1301 -0.7217 -1.2490 32 1 1.6767 -1.7489 -1.2492 33 1 0.1561 -1.6663 -2.6145 34 1 -0.5859 -0.0140 -2.7471 35 1 -0.6039 0.8578 -5.3951 36 1 1.1175 0.9360 -6.0526 37 1 2.9357 0.1445 -4.0931 38 1 2.6040 -1.5557 -3.5493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594608636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:47 Heat of formation + Delta-G solvation = -39.405596 kcal Electronic energy + Delta-G solvation = -19842.509455 eV Core-core repulsion = 16550.779594 eV Total energy + Delta-G solvation = -3291.729861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.78496 -47.47460 -40.42286 -36.70537 -34.22962 -32.24718 -27.97949 -27.07179 -26.48007 -25.65206 -23.92566 -22.83651 -21.82632 -19.28248 -18.10991 -17.86599 -16.57767 -16.23971 -16.10098 -15.59117 -14.88693 -14.47022 -14.19954 -14.16302 -13.75511 -13.58418 -13.50712 -13.04503 -12.86009 -12.37100 -12.32532 -11.98266 -11.60281 -11.13619 -11.00562 -10.86779 -10.76622 -10.62881 -10.39742 -10.34229 -10.11528 -10.06996 -9.66153 -8.99720 -8.91416 -8.64101 -8.32234 -5.96807 -3.96934 2.81847 2.86567 3.33094 3.39815 3.42698 3.64911 3.90635 4.15361 4.43957 4.48732 5.02456 5.03222 5.21408 5.22412 5.36891 5.40220 5.48467 5.53327 5.58463 5.67059 5.80921 5.99650 6.09722 6.19033 6.50457 6.52988 6.69991 6.77189 6.83845 7.09836 7.20773 7.26734 7.35751 7.68828 7.83400 8.03249 8.47712 9.08359 9.66034 11.14901 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.046785 B = 0.003985 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.340305 B = 7024.781851 C = 7057.858388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.051 4.051 3 C -0.117 4.117 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.029 3.971 14 N -0.454 5.454 15 C 0.049 3.951 16 C -0.173 4.173 17 C -0.132 4.132 18 C 0.203 3.797 19 F -0.162 7.162 20 F -0.161 7.161 21 C 0.042 3.958 22 H 0.039 0.961 23 H 0.037 0.963 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.012 0.988 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.584 2.541 -18.169 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.051 4.051 3 C -0.175 4.175 4 C -0.005 4.005 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.099 4.099 14 N -0.176 5.176 15 C -0.080 4.080 16 C -0.175 4.175 17 C -0.169 4.169 18 C 0.165 3.835 19 F -0.142 7.142 20 F -0.141 7.141 21 C -0.086 4.086 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.111 0.889 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.447 3.096 -17.835 18.427 hybrid contribution -0.289 -0.843 0.701 1.134 sum -3.736 2.253 -17.134 17.681 Atomic orbital electron populations 1.21815 0.95848 1.00225 1.00630 1.20528 0.95024 0.95908 0.93644 1.21609 0.99548 0.95936 1.00363 1.19144 0.96059 0.95007 0.90283 1.21227 1.30756 1.11902 0.90569 0.92275 1.25011 0.95374 0.95126 0.99054 1.69964 1.37231 1.23308 1.23299 0.86666 0.78533 0.80146 0.83094 1.20814 1.21370 1.19895 1.22929 1.00173 0.95752 0.91081 1.69054 1.02497 1.45213 1.00796 1.23470 0.96664 1.00113 0.87742 1.23712 1.01973 1.00872 0.90901 1.24044 1.05159 0.90204 0.97538 1.19974 0.76356 0.90884 0.96236 1.93012 1.60954 1.86930 1.73346 1.93022 1.41567 1.82741 1.96810 1.23310 0.93445 1.00687 0.91184 0.94251 0.94340 0.92032 0.92571 0.94339 0.93794 0.96946 0.96753 0.93163 0.91064 0.93920 0.90064 0.88603 0.85706 0.85755 0.88871 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 7.42 37.16 0.28 -2.09 16 2 C -0.05 -0.99 0.60 -154.51 -0.09 -1.09 16 3 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 4 C 0.03 0.81 4.04 -27.88 -0.11 0.70 16 5 C -0.51 -13.77 7.65 -34.44 -0.26 -14.03 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.03 0.47 3.89 -3.82 -0.01 0.46 16 14 N -0.45 -6.31 5.27 -243.94 -1.29 -7.60 16 15 C 0.05 0.60 6.13 -6.77 -0.04 0.56 16 16 C -0.17 -1.87 3.35 -155.77 -0.52 -2.39 16 17 C -0.13 -1.12 10.50 -27.08 -0.28 -1.41 16 18 C 0.20 2.21 5.26 -27.08 -0.14 2.07 16 19 F -0.16 -1.92 17.60 2.25 0.04 -1.88 16 20 F -0.16 -1.96 17.60 2.25 0.04 -1.92 16 21 C 0.04 0.49 7.71 -6.76 -0.05 0.44 16 22 H 0.04 0.63 5.82 -51.93 -0.30 0.33 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.24 6.62 -51.93 -0.34 0.90 16 25 H 0.06 1.16 6.62 -51.93 -0.34 0.81 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 33 H 0.08 1.03 7.42 -51.93 -0.39 0.65 16 34 H 0.10 1.15 7.08 -51.93 -0.37 0.78 16 35 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.90 7.91 -51.93 -0.41 0.49 16 LS Contribution 310.13 15.07 4.67 4.67 Total: -1.00 -29.38 310.13 -7.60 -36.98 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -5.74 Total: -3.45 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -1.05 Total: -17.28 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: -0.55 Total: -33.62 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.08 Total: -3.81 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.38 -7.60 -36.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594608636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.422 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds