Wall clock time and date at job start Mon Mar 30 2020 06:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50703 * 109.47466 * 299.99910 * 4 2 1 6 6 H 1.07997 * 119.99722 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99873 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00416 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47184 * 90.00039 * 9 7 5 11 11 H 1.48498 * 109.47171 * 210.00013 * 9 7 5 12 12 H 1.48508 * 109.46868 * 330.00146 * 9 7 5 13 13 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 14 14 N 1.46905 * 109.46913 * 60.00285 * 13 2 1 15 15 C 1.47661 * 110.99805 * 266.31962 * 14 13 2 16 16 C 1.52649 * 87.64410 * 222.00052 * 15 14 13 17 17 C 1.52114 * 129.73614 * 246.27987 * 16 15 14 18 18 C 1.52117 * 129.73395 * 164.46881 * 16 15 14 19 19 F 1.39894 * 117.52504 * 226.40286 * 18 16 15 20 20 F 1.39906 * 117.51670 * 11.56023 * 18 16 15 21 21 C 1.47660 * 110.99786 * 169.99869 * 14 13 2 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 28 28 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 29 29 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 30 30 H 0.97001 * 120.00306 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47153 * 180.02562 * 13 2 1 32 32 H 1.08996 * 109.46952 * 300.00302 * 13 2 1 33 33 H 1.09002 * 113.52567 * 336.69477 * 15 14 13 34 34 H 1.08997 * 113.51887 * 107.31120 * 15 14 13 35 35 H 1.09000 * 117.51752 * 348.44886 * 17 16 15 36 36 H 1.09000 * 117.52577 * 133.54867 * 17 16 15 37 37 H 1.08995 * 113.52332 * 252.69251 * 21 14 13 38 38 H 1.09004 * 113.52141 * 23.23816 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4798 6 1 0.9171 0.8675 2.3806 7 6 1.8710 -0.4816 3.7320 8 7 2.6279 -1.5504 3.8527 9 14 1.2490 0.3994 5.2572 10 1 -0.0591 -0.1754 5.6620 11 1 2.2275 0.2287 6.3611 12 1 1.0840 1.8452 4.9610 13 6 2.0401 -0.7213 -1.2492 14 7 1.5504 -0.0287 -2.4487 15 6 0.2925 -0.6325 -2.9318 16 6 0.8454 -0.4978 -4.3482 17 6 0.3659 0.3715 -5.5007 18 6 0.3815 -1.1541 -5.6397 19 9 1.3594 -1.7180 -6.4659 20 9 -0.8502 -1.8175 -5.6215 21 6 2.2095 -0.5461 -3.6645 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 -1.7489 1.2493 29 1 3.1300 -0.7217 1.2491 30 1 2.8628 -1.8814 4.7337 31 1 3.1301 -0.7217 -1.2490 32 1 1.6767 -1.7489 -1.2492 33 1 0.1561 -1.6663 -2.6145 34 1 -0.5859 -0.0140 -2.7471 35 1 -0.6039 0.8578 -5.3951 36 1 1.1175 0.9360 -6.0526 37 1 2.9357 0.1445 -4.0931 38 1 2.6040 -1.5557 -3.5493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594608636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:47 Heat of formation + Delta-G solvation = -56.670779 kcal Electronic energy + Delta-G solvation = -19843.258129 eV Core-core repulsion = 16550.779594 eV Total energy + Delta-G solvation = -3292.478536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.64300 -48.34617 -41.45389 -38.19982 -35.37242 -34.21414 -29.54600 -28.60863 -27.99558 -26.78821 -25.60242 -23.78300 -23.16220 -20.16414 -19.62911 -18.73310 -18.30882 -17.55904 -17.01283 -16.76396 -16.48113 -15.92471 -15.33691 -15.03603 -14.96736 -14.69817 -14.55635 -14.44791 -14.20766 -13.89175 -13.68260 -13.39351 -13.02511 -12.74797 -12.68443 -12.44675 -12.24419 -12.14784 -12.00087 -11.67631 -11.58300 -11.29620 -11.10784 -10.79979 -10.62696 -10.50165 -9.79424 -8.13900 -6.20791 1.41254 1.41611 1.52349 1.97648 2.11164 2.44114 2.80545 3.07357 3.20186 3.20957 3.62654 3.94643 4.00483 4.17153 4.27857 4.37347 4.46313 4.55110 4.58963 4.65374 4.75219 4.77676 4.83378 4.87567 4.97580 5.08476 5.20891 5.22306 5.35207 5.52686 5.54398 5.59420 5.67057 5.87920 5.93500 5.99886 6.36819 6.94306 7.46699 8.98437 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.046785 B = 0.003985 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.340305 B = 7024.781851 C = 7057.858388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.049 4.049 3 C -0.108 4.108 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.040 3.960 14 N -0.458 5.458 15 C 0.043 3.957 16 C -0.175 4.175 17 C -0.102 4.102 18 C 0.186 3.814 19 F -0.171 7.171 20 F -0.172 7.172 21 C 0.042 3.958 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.031 0.969 27 H 0.068 0.932 28 H -0.017 1.017 29 H -0.015 1.015 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.562 4.328 -19.534 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.049 4.049 3 C -0.165 4.165 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.580 5.580 9 Si 0.780 3.220 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.187 1.187 13 C -0.089 4.089 14 N -0.180 5.180 15 C -0.085 4.085 16 C -0.177 4.177 17 C -0.139 4.139 18 C 0.149 3.851 19 F -0.151 7.151 20 F -0.152 7.152 21 C -0.086 4.086 22 H 0.087 0.913 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.002 0.998 29 H 0.003 0.997 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.127 0.873 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.434 4.895 -19.216 20.320 hybrid contribution 0.029 -1.443 1.071 1.797 sum -4.406 3.452 -18.146 18.989 Atomic orbital electron populations 1.21717 0.94708 1.00108 1.01083 1.20396 0.95884 0.95974 0.92640 1.21506 0.99066 0.95318 1.00590 1.19031 0.94087 0.93982 0.92798 1.21613 1.30188 1.11892 0.91461 0.91672 1.25903 0.95678 0.95901 1.02535 1.70105 1.38819 1.25038 1.24019 0.85593 0.77964 0.79413 0.78987 1.20116 1.21259 1.18670 1.22650 0.99723 0.95247 0.91262 1.68991 1.03684 1.44933 1.00376 1.23488 0.96283 0.99782 0.88954 1.23622 1.00816 1.02714 0.90534 1.24259 1.06543 0.88353 0.94741 1.20278 0.75898 0.92600 0.96305 1.92993 1.61300 1.87299 1.73517 1.92998 1.42164 1.83222 1.96863 1.23353 0.94324 1.00942 0.90010 0.91269 0.94786 0.93917 0.94366 0.95001 0.91309 0.99848 0.99692 0.93181 0.91658 0.94513 0.90870 0.87772 0.83755 0.83473 0.87302 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 7.42 71.98 0.53 -3.77 16 2 C -0.05 -1.90 0.60 -52.18 -0.03 -1.93 16 3 C -0.11 -4.02 8.06 71.98 0.58 -3.44 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -28.37 7.65 25.60 0.20 -28.17 16 6 H 0.07 3.46 5.68 -2.91 -0.02 3.44 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 8 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 9 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 13 C 0.04 1.30 3.89 86.30 0.34 1.64 16 14 N -0.46 -11.83 5.27 -925.68 -4.88 -16.71 16 15 C 0.04 0.98 6.13 83.98 0.52 1.50 16 16 C -0.17 -3.32 3.35 -52.99 -0.18 -3.50 16 17 C -0.10 -1.33 10.50 30.37 0.32 -1.01 16 18 C 0.19 3.64 5.26 30.37 0.16 3.80 16 19 F -0.17 -3.75 17.60 44.97 0.79 -2.96 16 20 F -0.17 -3.92 17.60 44.97 0.79 -3.12 16 21 C 0.04 0.88 7.71 83.98 0.65 1.53 16 22 H 0.07 2.07 5.82 -2.39 -0.01 2.06 16 23 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.04 1.68 6.62 -2.39 -0.02 1.67 16 25 H 0.04 1.54 6.62 -2.39 -0.02 1.52 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 2.22 7.60 -2.39 -0.02 2.20 16 28 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 29 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 32 H 0.04 1.23 7.31 -2.39 -0.02 1.22 16 33 H 0.07 1.79 7.42 -2.39 -0.02 1.77 16 34 H 0.10 2.18 7.08 -2.39 -0.02 2.16 16 35 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 1.65 7.91 -2.39 -0.02 1.63 16 Total: -1.00 -64.09 310.13 3.72 -60.37 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.04 Total: 4.07 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 3.66 Total: -30.98 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -4.59 Total: -73.78 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 1.58 Total: -6.09 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.09 3.72 -60.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594608636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.700 kcal (2) G-P(sol) polarization free energy of solvation -64.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds