Wall clock time and date at job start Mon Mar 30 2020 06:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38115 * 120.39898 * 2 1 4 4 C 1.39628 * 118.32880 * 180.24101 * 3 2 1 5 5 N 1.38544 * 120.52875 * 179.76313 * 4 3 2 6 6 C 1.47962 * 111.00053 * 179.71714 * 5 4 3 7 7 C 1.53935 * 86.30001 * 222.47170 * 6 5 4 8 8 C 1.50703 * 113.73346 * 138.02887 * 7 6 5 9 9 H 1.07996 * 119.99623 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99947 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00097 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99816 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47083 * 89.99480 * 12 10 8 14 14 H 1.48498 * 109.46782 * 209.99440 * 12 10 8 15 15 H 1.48501 * 109.46822 * 329.99095 * 12 10 8 16 16 C 1.48187 * 111.07802 * 80.42619 * 5 4 3 17 17 N 1.32986 * 118.93814 * 359.48147 * 4 3 2 18 18 C 1.31749 * 120.68714 * 0.25371 * 17 4 3 19 19 C 1.50699 * 119.08298 * 179.97438 * 18 17 4 20 20 C 1.53000 * 117.49912 * 188.74716 * 19 18 17 21 21 C 1.53007 * 117.49650 * 120.09101 * 19 18 17 22 22 N 1.31785 * 121.83053 * 0.02562 * 18 17 4 23 23 H 1.08995 * 109.47289 * 270.27856 * 1 2 3 24 24 H 1.09003 * 109.47098 * 30.28400 * 1 2 3 25 25 H 1.09007 * 109.47019 * 150.27596 * 1 2 3 26 26 H 1.08001 * 120.83980 * 359.97385 * 3 2 1 27 27 H 1.09002 * 113.76087 * 108.09634 * 6 5 4 28 28 H 1.09005 * 113.75858 * 336.84096 * 6 5 4 29 29 H 1.09003 * 113.72873 * 269.30064 * 7 6 5 30 30 H 0.97001 * 119.99956 * 180.02562 * 11 10 8 31 31 H 1.09005 * 113.65869 * 23.13569 * 16 5 4 32 32 H 1.09002 * 113.92722 * 251.82202 * 16 5 4 33 33 H 1.09003 * 115.55476 * 334.42564 * 19 18 17 34 34 H 1.08996 * 117.50022 * 0.02562 * 20 19 18 35 35 H 1.09003 * 117.49617 * 145.02614 * 20 19 18 36 36 H 1.09002 * 117.49684 * 214.98332 * 21 19 18 37 37 H 1.08997 * 117.49880 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1408 -0.0052 5 7 4.3476 2.3080 -0.0103 6 6 5.7971 2.0106 -0.0084 7 6 5.9271 3.1453 1.0236 8 6 6.8654 2.8276 2.1594 9 1 7.3708 1.8738 2.1915 10 6 7.0775 3.7543 3.1580 11 7 6.4616 4.9155 3.1192 12 14 8.2400 3.3602 4.5663 13 1 9.6140 3.7967 4.2108 14 1 7.7948 4.0740 5.7900 15 1 8.2349 1.8966 4.8174 16 6 4.4462 2.8836 1.3516 17 7 4.2023 -0.0454 0.0007 18 6 3.4955 -1.1573 0.0061 19 6 4.2140 -2.4820 0.0120 20 6 3.3716 -3.7434 -0.1881 21 6 3.9530 -3.4219 1.1909 22 7 2.1777 -1.1432 0.0056 23 1 -0.3633 0.0050 1.0276 24 1 -0.3633 0.8875 -0.5183 25 1 -0.3633 -0.8925 -0.5096 26 1 1.6862 2.1380 -0.0004 27 1 6.2899 2.2214 -0.9575 28 1 6.0427 1.0256 0.3887 29 1 6.1120 4.1233 0.5792 30 1 6.6111 5.5676 3.8216 31 1 4.2948 2.1538 2.1470 32 1 3.8601 3.7920 1.4911 33 1 5.2177 -2.4744 -0.4129 34 1 2.2978 -3.6152 -0.3245 35 1 3.8213 -4.5658 -0.7445 36 1 4.7850 -4.0328 1.5411 37 1 3.2621 -3.0819 1.9622 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596431989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:48 Heat of formation + Delta-G solvation = 110.613364 kcal Electronic energy + Delta-G solvation = -18931.377644 eV Core-core repulsion = 16096.842280 eV Total energy + Delta-G solvation = -2834.535365 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10781 -38.85511 -36.89806 -34.01553 -32.82128 -31.65120 -28.93734 -27.54940 -25.56494 -24.60525 -24.36594 -22.38042 -21.39672 -20.50938 -18.80638 -17.30318 -17.08711 -16.08713 -15.51143 -15.05290 -14.84094 -14.58508 -14.32116 -14.05096 -13.43731 -13.15228 -12.78914 -12.39649 -12.14525 -12.01546 -11.57013 -11.47165 -11.26185 -10.99675 -10.68794 -10.66010 -10.53640 -10.44650 -10.14105 -9.85315 -9.46456 -9.17012 -9.08822 -8.84098 -8.53821 -8.06069 -6.12384 -4.16819 1.19656 1.39021 3.26333 3.33279 3.36949 3.62606 3.88086 4.07118 4.32290 4.35979 4.43838 4.89658 5.04546 5.05542 5.15109 5.23140 5.27612 5.44900 5.49897 5.63160 5.64174 5.72430 5.84572 5.92524 6.03026 6.09844 6.19150 6.24912 6.36541 6.46863 6.63967 6.77237 6.85046 6.90824 7.45877 7.63176 7.79745 7.90970 8.27670 8.47967 8.86778 9.48829 10.97124 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021414 B = 0.005547 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.266904 B = 5046.218809 C = 5775.680779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.178 3.822 3 C -0.240 4.240 4 C 0.347 3.653 5 N -0.453 5.453 6 C 0.012 3.988 7 C 0.039 3.961 8 C -0.516 4.516 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.892 3.108 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.034 3.966 17 N -0.546 5.546 18 C 0.367 3.633 19 C -0.097 4.097 20 C -0.155 4.155 21 C -0.156 4.156 22 N -0.546 5.546 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.143 0.857 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.263 0.737 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.269 -11.562 -5.096 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.035 3.965 3 C -0.264 4.264 4 C 0.108 3.892 5 N -0.172 5.172 6 C -0.116 4.116 7 C 0.020 3.980 8 C -0.554 4.554 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.720 3.280 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.091 4.091 17 N -0.265 5.265 18 C 0.099 3.901 19 C -0.117 4.117 20 C -0.192 4.192 21 C -0.194 4.194 22 N -0.263 5.263 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.161 0.839 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.145 0.855 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.116 -11.770 -5.516 15.876 hybrid contribution 0.382 0.387 1.280 1.391 sum -8.734 -11.383 -4.235 14.959 Atomic orbital electron populations 1.20703 0.88185 1.03566 1.03312 1.21426 0.97105 0.87890 0.90120 1.22209 0.94409 1.00408 1.09419 1.21101 0.91473 0.90224 0.86397 1.65989 1.08929 1.14966 1.27294 1.24177 0.84558 1.02121 1.00708 1.20398 0.90280 0.94461 0.92877 1.21048 1.26152 1.01606 1.06563 0.92094 1.25025 0.95628 0.94769 0.98182 1.69953 1.42213 1.06425 1.33824 0.86583 0.81182 0.78589 0.81652 1.20418 1.21169 1.19795 1.24333 1.02732 0.97882 0.84182 1.68205 1.41546 0.98257 1.18516 1.21845 0.86018 0.92572 0.89715 1.20596 0.99769 0.85435 1.05910 1.22991 1.00721 0.96473 0.99052 1.22955 1.03341 1.01372 0.91739 1.67869 1.09453 1.30162 1.18836 0.90038 0.90365 0.90311 0.83890 0.91297 0.89106 0.91683 0.92756 0.92088 0.90275 0.85532 0.87358 0.88484 0.88083 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.21 36.01 0.37 -0.68 16 2 C 0.18 2.72 6.81 -82.33 -0.56 2.16 16 3 C -0.24 -4.07 9.73 -39.11 -0.38 -4.45 16 4 C 0.35 6.92 5.90 -154.78 -0.91 6.01 16 5 N -0.45 -9.63 6.27 -175.63 -1.10 -10.73 16 6 C 0.01 0.26 7.21 -2.77 -0.02 0.24 16 7 C 0.04 0.97 3.61 -90.83 -0.33 0.64 16 8 C -0.52 -13.94 8.77 -34.44 -0.30 -14.24 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 11 N -0.89 -25.03 13.27 55.43 0.74 -24.29 16 12 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 16 C 0.03 0.78 7.45 -2.65 -0.02 0.76 16 17 N -0.55 -10.84 8.26 -9.97 -0.08 -10.92 16 18 C 0.37 6.42 7.31 -157.24 -1.15 5.27 16 19 C -0.10 -1.36 6.23 -91.77 -0.57 -1.94 16 20 C -0.15 -1.72 10.01 -26.69 -0.27 -1.99 16 21 C -0.16 -1.85 10.24 -26.69 -0.27 -2.12 16 22 N -0.55 -8.93 9.28 -7.07 -0.07 -8.99 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 27 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.09 2.08 6.65 -51.93 -0.35 1.73 16 29 H 0.07 1.73 8.13 -51.93 -0.42 1.31 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.06 1.46 7.86 -51.93 -0.41 1.05 16 32 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 33 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.11 1.28 7.54 -51.93 -0.39 0.88 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 314.47 15.07 4.74 4.74 Total: -1.00 -29.45 314.47 -10.65 -40.10 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.34 Total: 2.80 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -4.52 Total: -8.62 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.51 Total: -54.94 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.45 -10.65 -40.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596431989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.715 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds