Wall clock time and date at job start Mon Mar 30 2020 06:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38115 * 120.39898 * 2 1 4 4 C 1.39628 * 118.32880 * 180.24101 * 3 2 1 5 5 N 1.38544 * 120.52875 * 179.76313 * 4 3 2 6 6 C 1.47962 * 111.00053 * 179.71714 * 5 4 3 7 7 C 1.53935 * 86.30001 * 222.47170 * 6 5 4 8 8 C 1.50703 * 113.73346 * 138.02887 * 7 6 5 9 9 H 1.07996 * 119.99623 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99947 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00097 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99816 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47083 * 89.99480 * 12 10 8 14 14 H 1.48498 * 109.46782 * 209.99440 * 12 10 8 15 15 H 1.48501 * 109.46822 * 329.99095 * 12 10 8 16 16 C 1.48187 * 111.07802 * 80.42619 * 5 4 3 17 17 N 1.32986 * 118.93814 * 359.48147 * 4 3 2 18 18 C 1.31749 * 120.68714 * 0.25371 * 17 4 3 19 19 C 1.50699 * 119.08298 * 179.97438 * 18 17 4 20 20 C 1.53000 * 117.49912 * 188.74716 * 19 18 17 21 21 C 1.53007 * 117.49650 * 120.09101 * 19 18 17 22 22 N 1.31785 * 121.83053 * 0.02562 * 18 17 4 23 23 H 1.08995 * 109.47289 * 270.27856 * 1 2 3 24 24 H 1.09003 * 109.47098 * 30.28400 * 1 2 3 25 25 H 1.09007 * 109.47019 * 150.27596 * 1 2 3 26 26 H 1.08001 * 120.83980 * 359.97385 * 3 2 1 27 27 H 1.09002 * 113.76087 * 108.09634 * 6 5 4 28 28 H 1.09005 * 113.75858 * 336.84096 * 6 5 4 29 29 H 1.09003 * 113.72873 * 269.30064 * 7 6 5 30 30 H 0.97001 * 119.99956 * 180.02562 * 11 10 8 31 31 H 1.09005 * 113.65869 * 23.13569 * 16 5 4 32 32 H 1.09002 * 113.92722 * 251.82202 * 16 5 4 33 33 H 1.09003 * 115.55476 * 334.42564 * 19 18 17 34 34 H 1.08996 * 117.50022 * 0.02562 * 20 19 18 35 35 H 1.09003 * 117.49617 * 145.02614 * 20 19 18 36 36 H 1.09002 * 117.49684 * 214.98332 * 21 19 18 37 37 H 1.08997 * 117.49880 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1408 -0.0052 5 7 4.3476 2.3080 -0.0103 6 6 5.7971 2.0106 -0.0084 7 6 5.9271 3.1453 1.0236 8 6 6.8654 2.8276 2.1594 9 1 7.3708 1.8738 2.1915 10 6 7.0775 3.7543 3.1580 11 7 6.4616 4.9155 3.1192 12 14 8.2400 3.3602 4.5663 13 1 9.6140 3.7967 4.2108 14 1 7.7948 4.0740 5.7900 15 1 8.2349 1.8966 4.8174 16 6 4.4462 2.8836 1.3516 17 7 4.2023 -0.0454 0.0007 18 6 3.4955 -1.1573 0.0061 19 6 4.2140 -2.4820 0.0120 20 6 3.3716 -3.7434 -0.1881 21 6 3.9530 -3.4219 1.1909 22 7 2.1777 -1.1432 0.0056 23 1 -0.3633 0.0050 1.0276 24 1 -0.3633 0.8875 -0.5183 25 1 -0.3633 -0.8925 -0.5096 26 1 1.6862 2.1380 -0.0004 27 1 6.2899 2.2214 -0.9575 28 1 6.0427 1.0256 0.3887 29 1 6.1120 4.1233 0.5792 30 1 6.6111 5.5676 3.8216 31 1 4.2948 2.1538 2.1470 32 1 3.8601 3.7920 1.4911 33 1 5.2177 -2.4744 -0.4129 34 1 2.2978 -3.6152 -0.3245 35 1 3.8213 -4.5658 -0.7445 36 1 4.7850 -4.0328 1.5411 37 1 3.2621 -3.0819 1.9622 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596431989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:48 Heat of formation + Delta-G solvation = 93.771706 kcal Electronic energy + Delta-G solvation = -18932.107954 eV Core-core repulsion = 16096.842280 eV Total energy + Delta-G solvation = -2835.265674 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.52005 -40.46718 -37.95143 -35.45736 -34.62857 -33.14225 -30.34235 -29.04361 -27.20164 -26.40580 -25.82321 -23.30937 -22.73601 -21.78699 -20.63837 -18.95235 -18.66151 -17.58592 -16.89108 -16.49098 -16.44783 -16.12251 -15.92347 -15.29041 -14.85870 -14.37995 -14.04297 -13.91876 -13.47776 -13.26806 -13.13898 -13.02394 -12.85739 -12.44111 -12.37683 -12.16055 -11.85816 -11.70303 -11.49925 -11.37301 -11.29526 -11.06707 -10.60516 -10.50792 -10.23619 -9.68471 -8.20500 -6.31825 -0.13699 0.03173 1.40690 1.41508 1.51836 2.37493 2.43456 2.62845 2.86106 3.00743 3.10714 3.20994 3.71988 3.88391 3.96579 4.11733 4.14943 4.18147 4.22565 4.36654 4.48937 4.58892 4.68473 4.72836 4.76481 4.79760 4.85961 4.93576 4.98751 5.02455 5.08603 5.15131 5.31098 5.47433 5.55725 5.76428 6.08785 6.16170 6.22737 6.75417 7.13086 7.36869 8.89010 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021414 B = 0.005547 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.266904 B = 5046.218809 C = 5775.680779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.182 3.818 3 C -0.245 4.245 4 C 0.315 3.685 5 N -0.447 5.447 6 C 0.025 3.975 7 C 0.027 3.973 8 C -0.533 4.533 9 H 0.055 0.945 10 C 0.021 3.979 11 N -0.916 5.916 12 Si 0.956 3.044 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.271 1.271 16 C 0.049 3.951 17 N -0.574 5.574 18 C 0.355 3.645 19 C -0.128 4.128 20 C -0.129 4.129 21 C -0.149 4.149 22 N -0.543 5.543 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.160 0.840 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.265 0.735 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.430 -13.342 -4.985 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.037 3.963 3 C -0.269 4.269 4 C 0.077 3.923 5 N -0.166 5.166 6 C -0.103 4.103 7 C 0.008 3.992 8 C -0.571 4.571 9 H 0.073 0.927 10 C -0.179 4.179 11 N -0.555 5.555 12 Si 0.781 3.219 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.195 1.195 16 C -0.078 4.078 17 N -0.293 5.293 18 C 0.087 3.913 19 C -0.148 4.148 20 C -0.166 4.166 21 C -0.187 4.187 22 N -0.260 5.260 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.110 0.890 26 H 0.178 0.822 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.145 0.855 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.284 -13.569 -5.421 17.868 hybrid contribution 0.658 0.856 1.201 1.615 sum -9.626 -12.714 -4.220 16.495 Atomic orbital electron populations 1.20859 0.84350 1.05296 1.04784 1.22240 0.99397 0.86857 0.87762 1.22455 0.93247 1.02042 1.09192 1.21210 0.92644 0.89847 0.88554 1.65941 1.08353 1.16284 1.26071 1.23941 0.85684 1.00433 1.00208 1.20333 0.91351 0.94192 0.93331 1.21295 1.26766 1.01516 1.07532 0.92708 1.25764 0.97104 0.94572 1.00495 1.70052 1.43445 1.07227 1.34735 0.85583 0.79302 0.78368 0.78615 1.19639 1.20614 1.19527 1.23944 1.01273 0.97470 0.85065 1.68157 1.42658 0.98892 1.19616 1.22507 0.86724 0.93084 0.88988 1.20764 1.00351 0.85095 1.08572 1.23078 1.00128 0.95097 0.98345 1.23038 1.03793 1.00362 0.91488 1.68033 1.08950 1.30540 1.18526 0.88413 0.88205 0.89036 0.82250 0.90316 0.90021 0.94063 0.92562 0.93654 0.90379 0.85536 0.87849 0.85648 0.85947 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 10.21 71.24 0.73 -0.96 16 2 C 0.18 5.20 6.81 42.42 0.29 5.49 16 3 C -0.25 -8.11 9.73 22.58 0.22 -7.89 16 4 C 0.32 12.67 5.90 133.16 0.79 13.46 16 5 N -0.45 -19.43 6.27 -709.58 -4.45 -23.88 16 6 C 0.03 1.14 7.21 86.41 0.62 1.77 16 7 C 0.03 1.40 3.61 -10.90 -0.04 1.36 16 8 C -0.53 -29.55 8.77 25.60 0.22 -29.32 16 9 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 10 C 0.02 1.15 5.46 84.66 0.46 1.61 16 11 N -0.92 -52.58 13.27 21.45 0.28 -52.29 16 12 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 16 C 0.05 2.31 7.45 86.36 0.64 2.95 16 17 N -0.57 -23.04 8.26 -185.44 -1.53 -24.57 16 18 C 0.36 12.24 7.31 138.77 1.01 13.26 16 19 C -0.13 -3.46 6.23 -11.54 -0.07 -3.53 16 20 C -0.13 -2.54 10.01 30.62 0.31 -2.23 16 21 C -0.15 -3.24 10.24 30.62 0.31 -2.93 16 22 N -0.54 -17.00 9.28 -176.29 -1.64 -18.63 16 23 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.10 1.37 8.10 -2.39 -0.02 1.35 16 25 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.16 4.60 8.06 -2.91 -0.02 4.57 16 27 H 0.08 3.35 8.14 -2.39 -0.02 3.34 16 28 H 0.08 3.86 6.65 -2.38 -0.02 3.85 16 29 H 0.04 2.30 8.13 -2.39 -0.02 2.28 16 30 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.05 2.25 7.86 -2.38 -0.02 2.23 16 32 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 33 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.10 2.17 7.54 -2.39 -0.02 2.15 16 35 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -64.43 314.47 1.25 -63.18 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 1.06 Total: 17.91 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 5.50 Total: -6.97 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -7.33 Total: -119.37 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -64.43 1.25 -63.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596431989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.950 kcal (2) G-P(sol) polarization free energy of solvation -64.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds