Wall clock time and date at job start Mon Mar 30 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00161 * 2 1 4 4 C 1.53004 * 109.46899 * 269.99979 * 3 2 1 5 5 H 1.09002 * 110.26737 * 305.69908 * 4 3 2 6 6 C 1.54348 * 110.38627 * 183.56643 * 4 3 2 7 7 C 1.54336 * 102.39430 * 267.38054 * 6 4 3 8 8 C 1.51369 * 105.17193 * 333.65344 * 7 6 4 9 9 C 1.38504 * 130.39255 * 197.19074 * 8 7 6 10 10 C 1.38098 * 120.21368 * 179.97438 * 9 8 7 11 11 C 1.38258 * 119.93691 * 0.02562 * 10 9 8 12 12 C 1.38104 * 119.93086 * 0.02562 * 11 10 9 13 13 C 1.38216 * 109.75642 * 17.18461 * 8 7 6 14 14 C 1.34770 * 119.99887 * 179.97438 * 2 1 3 15 15 O 1.21691 * 120.00244 * 179.97438 * 14 2 1 16 16 C 1.46376 * 120.00518 * 0.02562 * 14 2 1 17 17 H 1.08004 * 119.99522 * 359.97438 * 16 14 2 18 18 C 1.40040 * 120.00332 * 179.97438 * 16 14 2 19 19 N 1.30671 * 120.00330 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99941 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47233 * 89.99991 * 20 18 16 22 22 H 1.48500 * 109.46883 * 209.99759 * 20 18 16 23 23 H 1.48495 * 109.47012 * 330.00002 * 20 18 16 24 24 H 1.09001 * 109.46743 * 89.99912 * 1 2 3 25 25 H 1.09000 * 109.46871 * 210.00284 * 1 2 3 26 26 H 1.09002 * 109.46781 * 330.00328 * 1 2 3 27 27 H 1.08997 * 109.47605 * 149.99414 * 3 2 1 28 28 H 1.09008 * 109.47380 * 29.99414 * 3 2 1 29 29 H 1.09002 * 110.81840 * 25.60639 * 6 4 3 30 30 H 1.09001 * 110.82099 * 149.15356 * 6 4 3 31 31 H 1.09003 * 110.30439 * 214.72673 * 7 6 4 32 32 H 1.08999 * 110.39005 * 92.61797 * 7 6 4 33 33 H 1.07994 * 119.88752 * 0.02562 * 9 8 7 34 34 H 1.08004 * 120.03067 * 179.97438 * 10 9 8 35 35 H 1.07994 * 120.03325 * 180.02562 * 11 10 9 36 36 H 1.08003 * 119.88709 * 180.02562 * 12 11 10 37 37 H 0.96995 * 120.00612 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 1 2.9533 0.9169 -1.9974 6 6 3.3009 2.9995 -1.4682 7 6 2.2238 4.1040 -1.5114 8 6 1.0174 3.4559 -2.1563 9 6 -0.1065 4.0247 -2.7322 10 6 -1.0950 3.2223 -3.2670 11 6 -0.9635 1.8465 -3.2274 12 6 0.1559 1.2775 -2.6526 13 6 1.1490 2.0806 -2.1168 14 6 2.1389 -1.1672 0.0005 15 8 3.3558 -1.1672 0.0001 16 6 1.4071 -2.4349 0.0005 17 1 0.3271 -2.4349 0.0005 18 6 2.1073 -3.6476 0.0005 19 7 3.4140 -3.6477 0.0000 20 14 1.1733 -5.2654 -0.0002 21 1 0.9263 -5.6938 -1.4005 22 1 1.9756 -6.3005 0.6999 23 1 -0.1245 -5.0880 0.6994 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.1499 1.1385 0.5139 28 1 1.6085 2.0285 0.5138 29 1 3.9058 3.0833 -0.5653 30 1 3.9269 3.0337 -2.3599 31 1 2.5683 4.9450 -2.1132 32 1 1.9802 4.4365 -0.5023 33 1 -0.2096 5.0993 -2.7638 34 1 -1.9703 3.6689 -3.7151 35 1 -1.7354 1.2175 -3.6456 36 1 0.2581 0.2028 -2.6225 37 1 3.8991 -4.4877 0.0004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598471516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:22 Heat of formation + Delta-G solvation = -10.987643 kcal Electronic energy + Delta-G solvation = -19500.742905 eV Core-core repulsion = 16628.641774 eV Total energy + Delta-G solvation = -2872.101131 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10573 -37.52701 -35.66657 -33.74248 -32.42619 -31.04596 -29.25437 -28.34620 -26.24993 -25.39949 -23.60266 -22.39813 -20.65262 -20.09371 -18.95721 -16.44423 -16.01186 -15.55274 -15.45056 -14.82730 -14.76153 -14.27024 -14.02888 -13.54570 -13.02530 -12.91566 -12.42413 -12.32027 -12.00420 -11.67815 -11.49433 -11.35868 -11.21096 -11.17885 -10.98126 -10.72914 -10.67529 -10.44382 -10.31259 -10.11095 -10.00482 -8.84942 -8.53065 -8.29718 -7.55675 -7.09573 -6.17817 -4.62761 1.60635 1.66111 3.13851 3.21038 3.24000 4.01179 4.09944 4.53271 4.59276 4.74389 4.86138 5.20887 5.23869 5.27622 5.37782 5.57784 5.72437 5.75544 5.81307 5.86306 5.96793 6.03841 6.09713 6.17809 6.21769 6.34072 6.40337 6.49953 6.58427 6.63645 6.65911 6.73654 6.79892 7.02560 7.28043 7.46019 7.67211 8.17131 8.39165 9.03999 9.46407 10.59732 10.78897 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.027657 B = 0.006056 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.154065 B = 4622.592489 C = 5301.546889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.644 5.644 3 C 0.144 3.856 4 C -0.070 4.070 5 H 0.085 0.915 6 C -0.114 4.114 7 C -0.079 4.079 8 C -0.104 4.104 9 C -0.116 4.116 10 C -0.128 4.128 11 C -0.126 4.126 12 C -0.094 4.094 13 C -0.068 4.068 14 C 0.556 3.444 15 O -0.578 6.578 16 C -0.543 4.543 17 H 0.071 0.929 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.265 1.265 24 H 0.042 0.958 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.969 12.491 -4.199 14.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.382 5.382 3 C 0.019 3.981 4 C -0.090 4.090 5 H 0.103 0.897 6 C -0.152 4.152 7 C -0.116 4.116 8 C -0.104 4.104 9 C -0.134 4.134 10 C -0.147 4.147 11 C -0.144 4.144 12 C -0.112 4.112 13 C -0.068 4.068 14 C 0.362 3.638 15 O -0.460 6.460 16 C -0.580 4.580 17 H 0.089 0.911 18 C -0.132 4.132 19 N -0.396 5.396 20 Si 0.729 3.271 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.122 12.371 -4.174 14.420 hybrid contribution -0.731 -0.811 -0.094 1.096 sum -6.853 11.560 -4.268 14.100 Atomic orbital electron populations 1.21668 0.82419 1.00600 1.00277 1.47907 1.05026 1.05237 1.79998 1.20962 0.97744 0.86414 0.92977 1.21242 0.91796 0.97644 0.98310 0.89685 1.22290 0.96854 0.93620 1.02414 1.21031 0.92501 0.97988 1.00055 1.20637 0.95890 0.94822 0.99090 1.20500 0.93750 0.99173 0.99960 1.20918 0.98763 0.93836 1.01136 1.21015 0.97965 0.94898 1.00549 1.20849 0.93091 1.00389 0.96888 1.20588 0.96183 0.93370 0.96702 1.18234 0.86963 0.82276 0.76303 1.90592 1.14007 1.86352 1.55078 1.21012 0.93670 0.89310 1.54006 0.91063 1.25725 0.94580 1.00243 0.92637 1.70018 1.07036 1.27190 1.35398 0.86426 0.80220 0.81621 0.78827 1.19764 1.20482 1.18913 0.93995 0.91405 0.94523 0.90594 0.93086 0.90393 0.91221 0.91296 0.90541 0.86949 0.86541 0.86283 0.85432 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.82 9.17 59.85 0.55 2.36 16 2 N -0.64 -14.64 2.78 -183.24 -0.51 -15.15 16 3 C 0.14 2.83 4.84 -4.04 -0.02 2.81 16 4 C -0.07 -1.25 3.12 -90.74 -0.28 -1.53 16 5 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 6 C -0.11 -1.60 6.60 -25.33 -0.17 -1.77 16 7 C -0.08 -0.98 6.76 -26.86 -0.18 -1.16 16 8 C -0.10 -1.51 6.14 -104.20 -0.64 -2.15 16 9 C -0.12 -1.50 10.04 -39.53 -0.40 -1.89 16 10 C -0.13 -1.61 10.05 -39.63 -0.40 -2.01 16 11 C -0.13 -1.74 10.05 -39.62 -0.40 -2.14 16 12 C -0.09 -1.54 7.47 -39.54 -0.30 -1.84 16 13 C -0.07 -1.14 4.98 -104.21 -0.52 -1.66 16 14 C 0.56 15.72 7.61 -12.99 -0.10 15.62 16 15 O -0.58 -18.46 14.60 5.20 0.08 -18.38 16 16 C -0.54 -15.19 8.74 -35.63 -0.31 -15.50 16 17 H 0.07 1.83 6.00 -52.48 -0.31 1.52 16 18 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 19 N -0.77 -22.93 11.83 55.55 0.66 -22.28 16 20 Si 0.90 20.09 29.56 -169.99 -5.02 15.07 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 24 H 0.04 0.76 4.41 -51.93 -0.23 0.53 16 25 H 0.07 1.34 6.09 -51.93 -0.32 1.03 16 26 H 0.04 0.62 7.89 -51.93 -0.41 0.21 16 27 H 0.08 1.63 7.40 -51.93 -0.38 1.25 16 28 H 0.05 0.89 7.89 -51.92 -0.41 0.48 16 29 H 0.08 1.03 7.88 -51.93 -0.41 0.62 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.13 2.28 6.81 -52.48 -0.36 1.93 16 37 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 LS Contribution 300.55 15.07 4.53 4.53 Total: -1.00 -33.16 300.55 -8.45 -41.62 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -4.92 Total: 3.11 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -3.26 Total: -8.52 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.15 Total: -37.42 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.08 Total: -18.38 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.16 -8.45 -41.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598471516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.628 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds