Wall clock time and date at job start Mon Mar 30 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00161 * 2 1 4 4 C 1.53004 * 109.46899 * 269.99979 * 3 2 1 5 5 H 1.09002 * 110.26737 * 305.69908 * 4 3 2 6 6 C 1.54348 * 110.38627 * 183.56643 * 4 3 2 7 7 C 1.54336 * 102.39430 * 267.38054 * 6 4 3 8 8 C 1.51369 * 105.17193 * 333.65344 * 7 6 4 9 9 C 1.38504 * 130.39255 * 197.19074 * 8 7 6 10 10 C 1.38098 * 120.21368 * 179.97438 * 9 8 7 11 11 C 1.38258 * 119.93691 * 0.02562 * 10 9 8 12 12 C 1.38104 * 119.93086 * 0.02562 * 11 10 9 13 13 C 1.38216 * 109.75642 * 17.18461 * 8 7 6 14 14 C 1.34770 * 119.99887 * 179.97438 * 2 1 3 15 15 O 1.21691 * 120.00244 * 179.97438 * 14 2 1 16 16 C 1.46376 * 120.00518 * 0.02562 * 14 2 1 17 17 H 1.08004 * 119.99522 * 359.97438 * 16 14 2 18 18 C 1.40040 * 120.00332 * 179.97438 * 16 14 2 19 19 N 1.30671 * 120.00330 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99941 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47233 * 89.99991 * 20 18 16 22 22 H 1.48500 * 109.46883 * 209.99759 * 20 18 16 23 23 H 1.48495 * 109.47012 * 330.00002 * 20 18 16 24 24 H 1.09001 * 109.46743 * 89.99912 * 1 2 3 25 25 H 1.09000 * 109.46871 * 210.00284 * 1 2 3 26 26 H 1.09002 * 109.46781 * 330.00328 * 1 2 3 27 27 H 1.08997 * 109.47605 * 149.99414 * 3 2 1 28 28 H 1.09008 * 109.47380 * 29.99414 * 3 2 1 29 29 H 1.09002 * 110.81840 * 25.60639 * 6 4 3 30 30 H 1.09001 * 110.82099 * 149.15356 * 6 4 3 31 31 H 1.09003 * 110.30439 * 214.72673 * 7 6 4 32 32 H 1.08999 * 110.39005 * 92.61797 * 7 6 4 33 33 H 1.07994 * 119.88752 * 0.02562 * 9 8 7 34 34 H 1.08004 * 120.03067 * 179.97438 * 10 9 8 35 35 H 1.07994 * 120.03325 * 180.02562 * 11 10 9 36 36 H 1.08003 * 119.88709 * 180.02562 * 12 11 10 37 37 H 0.96995 * 120.00612 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 1 2.9533 0.9169 -1.9974 6 6 3.3009 2.9995 -1.4682 7 6 2.2238 4.1040 -1.5114 8 6 1.0174 3.4559 -2.1563 9 6 -0.1065 4.0247 -2.7322 10 6 -1.0950 3.2223 -3.2670 11 6 -0.9635 1.8465 -3.2274 12 6 0.1559 1.2775 -2.6526 13 6 1.1490 2.0806 -2.1168 14 6 2.1389 -1.1672 0.0005 15 8 3.3558 -1.1672 0.0001 16 6 1.4071 -2.4349 0.0005 17 1 0.3271 -2.4349 0.0005 18 6 2.1073 -3.6476 0.0005 19 7 3.4140 -3.6477 0.0000 20 14 1.1733 -5.2654 -0.0002 21 1 0.9263 -5.6938 -1.4005 22 1 1.9756 -6.3005 0.6999 23 1 -0.1245 -5.0880 0.6994 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.1499 1.1385 0.5139 28 1 1.6085 2.0285 0.5138 29 1 3.9058 3.0833 -0.5653 30 1 3.9269 3.0337 -2.3599 31 1 2.5683 4.9450 -2.1132 32 1 1.9802 4.4365 -0.5023 33 1 -0.2096 5.0993 -2.7638 34 1 -1.9703 3.6689 -3.7151 35 1 -1.7354 1.2175 -3.6456 36 1 0.2581 0.2028 -2.6225 37 1 3.8991 -4.4877 0.0004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598471516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:22 Heat of formation + Delta-G solvation = -30.952732 kcal Electronic energy + Delta-G solvation = -19501.608656 eV Core-core repulsion = 16628.641774 eV Total energy + Delta-G solvation = -2872.966882 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32933 -39.42654 -36.97348 -35.56214 -34.59614 -32.26450 -30.59252 -29.57329 -28.22375 -26.95930 -25.26361 -23.50897 -21.77975 -21.56887 -20.69261 -18.41233 -17.68270 -17.10798 -16.81463 -16.18935 -16.07857 -15.87481 -15.65628 -14.99939 -14.41387 -14.21461 -13.93681 -13.58803 -13.47368 -13.42112 -13.13052 -13.04696 -12.78798 -12.64138 -12.46591 -12.21054 -12.06351 -11.96372 -11.89517 -11.64791 -11.39999 -10.93574 -9.78228 -9.71794 -9.42327 -8.90853 -8.28651 -6.83803 0.52179 0.55018 1.37852 1.39365 1.54369 2.23003 2.46314 2.88284 2.91451 3.53607 3.61212 3.69090 4.08524 4.17884 4.23834 4.26119 4.30718 4.42979 4.55444 4.64620 4.71623 4.77930 4.85063 4.87690 4.95410 5.02347 5.06842 5.11190 5.23879 5.30185 5.34672 5.36146 5.64255 5.69295 5.76306 5.87733 6.14515 6.20111 6.43739 6.87864 7.43187 8.48434 8.68158 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.027657 B = 0.006056 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.154065 B = 4622.592489 C = 5301.546889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.644 5.644 3 C 0.145 3.855 4 C -0.067 4.067 5 H 0.031 0.969 6 C -0.111 4.111 7 C -0.070 4.070 8 C -0.106 4.106 9 C -0.112 4.112 10 C -0.119 4.119 11 C -0.128 4.128 12 C -0.116 4.116 13 C -0.097 4.097 14 C 0.539 3.461 15 O -0.630 6.630 16 C -0.569 4.569 17 H 0.090 0.910 18 C 0.029 3.971 19 N -0.822 5.822 20 Si 0.993 3.007 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.248 1.248 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.894 14.379 -4.727 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.379 5.379 3 C 0.021 3.979 4 C -0.087 4.087 5 H 0.050 0.950 6 C -0.149 4.149 7 C -0.107 4.107 8 C -0.106 4.106 9 C -0.130 4.130 10 C -0.137 4.137 11 C -0.146 4.146 12 C -0.134 4.134 13 C -0.097 4.097 14 C 0.345 3.655 15 O -0.517 6.517 16 C -0.605 4.605 17 H 0.108 0.892 18 C -0.186 4.186 19 N -0.452 5.452 20 Si 0.813 3.187 21 H -0.187 1.187 22 H -0.198 1.198 23 H -0.171 1.171 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.164 0.836 34 H 0.170 0.830 35 H 0.155 0.845 36 H 0.115 0.885 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.094 14.311 -4.703 17.596 hybrid contribution 0.146 -1.297 0.025 1.306 sum -8.947 13.014 -4.678 16.471 Atomic orbital electron populations 1.21781 0.80060 1.01522 1.01349 1.47741 1.06604 1.04962 1.78622 1.21071 0.96492 0.85709 0.94621 1.21076 0.93519 0.97862 0.96244 0.95029 1.22293 0.97247 0.92390 1.02931 1.21032 0.90756 0.97570 1.01326 1.20891 0.97064 0.93615 0.98994 1.20909 0.92694 1.00991 0.98426 1.21350 0.99625 0.93020 0.99711 1.21246 0.97265 0.96190 0.99910 1.20763 0.94746 0.98977 0.98958 1.20500 0.95688 0.94933 0.98598 1.18620 0.86626 0.84198 0.76042 1.90537 1.16168 1.87597 1.57436 1.21515 0.94737 0.89955 1.54312 0.89234 1.26976 0.95479 1.04883 0.91266 1.70196 1.09513 1.28776 1.36700 0.85086 0.78919 0.75339 0.79390 1.18721 1.19773 1.17092 0.92878 0.92181 0.91701 0.93527 0.90129 0.89831 0.90869 0.88568 0.89001 0.83615 0.83034 0.84453 0.88544 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.69 9.17 127.77 1.17 4.86 16 2 N -0.64 -30.51 2.78 -851.86 -2.37 -32.88 16 3 C 0.14 5.94 4.84 86.38 0.42 6.36 16 4 C -0.07 -2.51 3.12 -10.87 -0.03 -2.55 16 5 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 6 C -0.11 -3.10 6.60 31.50 0.21 -2.89 16 7 C -0.07 -1.54 6.76 30.51 0.21 -1.34 16 8 C -0.11 -2.77 6.14 -19.59 -0.12 -2.89 16 9 C -0.11 -2.40 10.04 22.30 0.22 -2.18 16 10 C -0.12 -2.49 10.05 22.24 0.22 -2.27 16 11 C -0.13 -3.26 10.05 22.24 0.22 -3.03 16 12 C -0.12 -3.82 7.47 22.30 0.17 -3.66 16 13 C -0.10 -3.22 4.98 -19.60 -0.10 -3.31 16 14 C 0.54 32.24 7.61 86.36 0.66 32.90 16 15 O -0.63 -43.22 14.60 -4.32 -0.06 -43.29 16 16 C -0.57 -32.89 8.74 24.83 0.22 -32.68 16 17 H 0.09 4.66 6.00 -2.91 -0.02 4.65 16 18 C 0.03 1.64 5.50 85.30 0.47 2.11 16 19 N -0.82 -51.38 11.83 21.83 0.26 -51.12 16 20 Si 0.99 41.74 29.56 68.60 2.03 43.76 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 24 H 0.05 1.95 4.41 -2.39 -0.01 1.94 16 25 H 0.06 2.38 6.09 -2.39 -0.01 2.37 16 26 H 0.06 2.11 7.89 -2.39 -0.02 2.09 16 27 H 0.05 2.15 7.40 -2.39 -0.02 2.13 16 28 H 0.08 2.78 7.89 -2.38 -0.02 2.76 16 29 H 0.08 2.21 7.88 -2.39 -0.02 2.19 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 35 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.10 3.68 6.81 -2.91 -0.02 3.66 16 37 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 Total: -1.00 -77.67 300.55 4.86 -72.82 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 1.07 Total: 21.27 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 3.93 Total: -10.57 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.11 Total: -84.00 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -0.06 Total: -43.29 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -77.67 4.86 -72.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598471516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.865 kcal (2) G-P(sol) polarization free energy of solvation -77.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds