Wall clock time and date at job start Mon Mar 30 2020 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 110.69466 * 2 1 4 4 C 1.54600 * 110.77610 * 123.30119 * 2 1 3 5 5 C 1.51570 * 102.84675 * 92.79471 * 4 2 1 6 6 C 1.37921 * 131.55503 * 196.10526 * 5 4 2 7 7 C 1.38307 * 120.08084 * 179.07438 * 6 5 4 8 8 C 1.38302 * 119.88304 * 0.27376 * 7 6 5 9 9 C 1.37918 * 120.26499 * 0.15978 * 8 7 6 10 10 C 1.38969 * 107.96727 * 16.03787 * 5 4 2 11 11 N 1.40034 * 110.95010 * 1.15054 * 10 5 4 12 12 C 1.46903 * 111.00387 * 219.82390 * 11 10 5 13 13 C 1.52999 * 109.47283 * 180.23025 * 12 11 10 14 14 C 1.53002 * 109.46787 * 174.65364 * 13 12 11 15 15 C 1.50707 * 109.46684 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00021 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99779 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00006 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99968 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47452 * 89.99984 * 19 17 15 21 21 H 1.48500 * 109.47004 * 209.99931 * 19 17 15 22 22 H 1.48496 * 109.47379 * 329.99814 * 19 17 15 23 23 H 1.09000 * 109.46906 * 290.08292 * 1 2 3 24 24 H 1.09003 * 109.47195 * 50.08068 * 1 2 3 25 25 H 1.08998 * 109.47519 * 170.08022 * 1 2 3 26 26 H 1.09003 * 109.47396 * 181.83883 * 3 2 1 27 27 H 1.08994 * 109.47796 * 301.84460 * 3 2 1 28 28 H 1.09001 * 109.47159 * 61.84224 * 3 2 1 29 29 H 1.08998 * 110.73993 * 334.45153 * 4 2 1 30 30 H 1.09007 * 110.73086 * 211.13132 * 4 2 1 31 31 H 1.08003 * 119.96446 * 359.35362 * 6 5 4 32 32 H 1.07999 * 120.05866 * 180.29370 * 7 6 5 33 33 H 1.07998 * 119.87163 * 180.13782 * 8 7 6 34 34 H 1.07999 * 119.90211 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.46861 * 300.23317 * 12 11 10 36 36 H 1.08999 * 109.46753 * 60.23153 * 12 11 10 37 37 H 1.09001 * 109.47243 * 294.65284 * 13 12 11 38 38 H 1.09003 * 109.47206 * 54.65369 * 13 12 11 39 39 H 1.09001 * 109.47164 * 299.99968 * 14 13 12 40 40 H 1.09000 * 109.47340 * 60.00557 * 14 13 12 41 41 H 0.97006 * 119.99894 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0707 1.4312 0.0000 4 6 2.0784 -0.7936 1.2081 5 6 2.2653 -2.1862 0.6397 6 6 2.4436 -3.4085 1.2533 7 6 2.5742 -4.5547 0.4904 8 6 2.5313 -4.4725 -0.8895 9 6 2.3621 -3.2516 -1.5083 10 6 2.2327 -2.0914 -0.7463 11 7 2.0676 -0.7618 -1.1535 12 6 1.1546 -0.6721 -2.3009 13 6 1.0040 0.7918 -2.7197 14 6 0.1612 0.8735 -3.9940 15 6 0.0124 2.3155 -4.4061 16 1 0.4732 3.0954 -3.8181 17 6 -0.7112 2.6389 -5.5343 18 7 -0.8406 3.8971 -5.8942 19 14 -1.5076 1.2897 -6.5516 20 1 -2.8806 1.0341 -6.0468 21 1 -1.5740 1.7152 -7.9728 22 1 -0.7015 0.0473 -6.4440 23 1 -0.3633 0.3529 0.9652 24 1 -0.3634 0.6595 -0.7882 25 1 -0.3634 -1.0123 -0.1770 26 1 3.1599 1.4082 -0.0330 27 1 1.6919 1.9628 -0.8729 28 1 1.7454 1.9425 0.9060 29 1 1.3555 -0.8034 2.0238 30 1 3.0312 -0.3812 1.5403 31 1 2.4769 -3.4713 2.3310 32 1 2.7090 -5.5122 0.9714 33 1 2.6310 -5.3680 -1.4850 34 1 2.3298 -3.1942 -2.5862 35 1 1.5591 -1.2483 -3.1330 36 1 0.1799 -1.0722 -2.0218 37 1 0.5122 1.3490 -1.9224 38 1 1.9890 1.2191 -2.9074 39 1 0.6530 0.3163 -4.7913 40 1 -0.8238 0.4463 -3.8062 41 1 -1.3500 4.1246 -6.6877 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599660857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:28 Heat of formation + Delta-G solvation = 30.706285 kcal Electronic energy + Delta-G solvation = -19607.189876 eV Core-core repulsion = 16872.729824 eV Total energy + Delta-G solvation = -2734.460052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12526 -37.55598 -34.43288 -32.91436 -32.06116 -31.00066 -29.33651 -27.35387 -26.56228 -26.13294 -23.05838 -21.44139 -21.30854 -20.08099 -19.21183 -16.77924 -16.46685 -15.98921 -15.46245 -15.05947 -14.73880 -14.20403 -13.89015 -13.79551 -13.14564 -12.81795 -12.71379 -12.63068 -12.46885 -12.13089 -11.90129 -11.62452 -11.57027 -11.45429 -11.23793 -11.03272 -10.89922 -10.80786 -10.36574 -10.00042 -9.85927 -9.60810 -9.42361 -9.15844 -8.77602 -8.54344 -7.58876 -6.04900 -4.02870 1.39722 1.43687 3.29736 3.37560 3.41138 3.63627 3.94770 4.44608 4.53249 4.62443 4.93902 4.99924 5.06760 5.17323 5.29169 5.34149 5.41663 5.48691 5.55565 5.65217 5.68063 5.74659 5.83239 5.86723 5.94537 6.02613 6.04565 6.09629 6.23750 6.34601 6.40226 6.48405 6.55093 6.58935 6.63020 6.82790 6.91723 7.17427 7.30145 7.38844 7.42905 7.78830 8.53305 9.00032 9.57822 11.08556 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027798 B = 0.005078 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.009310 B = 5512.917214 C = 6228.212706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 C -0.143 4.143 4 C -0.075 4.075 5 C -0.146 4.146 6 C -0.083 4.083 7 C -0.155 4.155 8 C -0.095 4.095 9 C -0.143 4.143 10 C 0.109 3.891 11 N -0.464 5.464 12 C 0.042 3.958 13 C -0.109 4.109 14 C -0.013 4.013 15 C -0.518 4.518 16 H 0.072 0.928 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.879 3.121 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.015 0.985 40 H 0.009 0.991 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 -14.107 14.673 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.014 3.986 3 C -0.200 4.200 4 C -0.113 4.113 5 C -0.149 4.149 6 C -0.102 4.102 7 C -0.174 4.174 8 C -0.114 4.114 9 C -0.164 4.164 10 C 0.009 3.991 11 N -0.176 5.176 12 C -0.083 4.083 13 C -0.146 4.146 14 C -0.051 4.051 15 C -0.556 4.556 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.543 5.543 19 Si 0.706 3.294 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.191 1.191 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.034 0.966 40 H 0.028 0.972 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.741 -13.662 14.319 20.607 hybrid contribution -1.042 -0.989 -0.546 1.536 sum 4.699 -14.650 13.773 20.649 Atomic orbital electron populations 1.22509 0.94601 1.02753 1.03504 1.22150 0.93762 0.94970 0.87672 1.22001 1.01551 0.93340 1.03097 1.21430 1.01595 0.90904 0.97348 1.20540 1.05510 0.95031 0.93772 1.20337 0.99356 0.91105 0.99367 1.20901 1.04778 0.97878 0.93884 1.20842 0.99009 0.96821 0.94713 1.20526 1.05592 0.90658 0.99642 1.19800 0.96451 0.89397 0.93414 1.61047 1.43859 1.05724 1.06992 1.22572 0.93769 1.00614 0.91390 1.21868 1.01256 0.92148 0.99370 1.19558 0.94523 0.98028 0.92988 1.21110 1.32871 0.91245 1.10413 0.91001 1.25020 0.95955 0.95217 0.97250 1.69913 1.41647 1.16867 1.25837 0.86795 0.80077 0.82948 0.79568 1.20344 1.21383 1.19051 0.91714 0.89684 0.92603 0.91957 0.90031 0.92124 0.90390 0.89702 0.86531 0.86267 0.86070 0.86159 0.90789 0.93518 0.91338 0.91750 0.96640 0.97245 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 7.19 37.16 0.27 -2.10 16 2 C 0.10 1.39 0.67 -129.98 -0.09 1.30 16 3 C -0.14 -1.89 8.49 37.15 0.32 -1.57 16 4 C -0.08 -0.90 6.10 -26.61 -0.16 -1.06 16 5 C -0.15 -1.93 6.23 -104.04 -0.65 -2.57 16 6 C -0.08 -0.96 10.03 -39.67 -0.40 -1.35 16 7 C -0.16 -1.69 10.06 -39.53 -0.40 -2.09 16 8 C -0.10 -1.10 10.02 -39.68 -0.40 -1.50 16 9 C -0.14 -1.95 9.53 -39.27 -0.37 -2.32 16 10 C 0.11 1.61 5.86 -83.41 -0.49 1.12 16 11 N -0.46 -7.20 4.83 -154.14 -0.74 -7.94 16 12 C 0.04 0.70 4.14 -3.82 -0.02 0.69 16 13 C -0.11 -2.12 3.50 -26.73 -0.09 -2.22 16 14 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 15 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 19 Si 0.88 21.75 27.47 -169.99 -4.67 17.09 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 23 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 24 H 0.08 1.29 5.21 -51.93 -0.27 1.01 16 25 H 0.05 0.77 7.21 -51.93 -0.37 0.40 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.24 5.12 -51.93 -0.27 0.98 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.80 7.87 -51.93 -0.41 0.40 16 30 H 0.08 0.95 7.92 -51.92 -0.41 0.54 16 31 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.58 7.37 -52.49 -0.39 1.19 16 35 H 0.07 1.25 7.30 -51.93 -0.38 0.87 16 36 H 0.05 0.77 6.22 -51.93 -0.32 0.45 16 37 H 0.07 1.29 3.71 -51.93 -0.19 1.10 16 38 H 0.06 1.31 8.02 -51.93 -0.42 0.89 16 39 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 40 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 313.54 15.07 4.73 4.73 Total: -1.00 -30.67 313.54 -9.25 -39.93 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.31 Total: 0.54 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -3.02 Total: -27.26 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.03 Total: -35.02 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.67 -9.25 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599660857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.634 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds