Wall clock time and date at job start Mon Mar 30 2020 07:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 110.69466 * 2 1 4 4 C 1.54600 * 110.77610 * 123.30119 * 2 1 3 5 5 C 1.51570 * 102.84675 * 92.79471 * 4 2 1 6 6 C 1.37921 * 131.55503 * 196.10526 * 5 4 2 7 7 C 1.38307 * 120.08084 * 179.07438 * 6 5 4 8 8 C 1.38302 * 119.88304 * 0.27376 * 7 6 5 9 9 C 1.37918 * 120.26499 * 0.15978 * 8 7 6 10 10 C 1.38969 * 107.96727 * 16.03787 * 5 4 2 11 11 N 1.40034 * 110.95010 * 1.15054 * 10 5 4 12 12 C 1.46903 * 111.00387 * 219.82390 * 11 10 5 13 13 C 1.52999 * 109.47283 * 180.23025 * 12 11 10 14 14 C 1.53002 * 109.46787 * 174.65364 * 13 12 11 15 15 C 1.50707 * 109.46684 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00021 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99779 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00006 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99968 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47452 * 89.99984 * 19 17 15 21 21 H 1.48500 * 109.47004 * 209.99931 * 19 17 15 22 22 H 1.48496 * 109.47379 * 329.99814 * 19 17 15 23 23 H 1.09000 * 109.46906 * 290.08292 * 1 2 3 24 24 H 1.09003 * 109.47195 * 50.08068 * 1 2 3 25 25 H 1.08998 * 109.47519 * 170.08022 * 1 2 3 26 26 H 1.09003 * 109.47396 * 181.83883 * 3 2 1 27 27 H 1.08994 * 109.47796 * 301.84460 * 3 2 1 28 28 H 1.09001 * 109.47159 * 61.84224 * 3 2 1 29 29 H 1.08998 * 110.73993 * 334.45153 * 4 2 1 30 30 H 1.09007 * 110.73086 * 211.13132 * 4 2 1 31 31 H 1.08003 * 119.96446 * 359.35362 * 6 5 4 32 32 H 1.07999 * 120.05866 * 180.29370 * 7 6 5 33 33 H 1.07998 * 119.87163 * 180.13782 * 8 7 6 34 34 H 1.07999 * 119.90211 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.46861 * 300.23317 * 12 11 10 36 36 H 1.08999 * 109.46753 * 60.23153 * 12 11 10 37 37 H 1.09001 * 109.47243 * 294.65284 * 13 12 11 38 38 H 1.09003 * 109.47206 * 54.65369 * 13 12 11 39 39 H 1.09001 * 109.47164 * 299.99968 * 14 13 12 40 40 H 1.09000 * 109.47340 * 60.00557 * 14 13 12 41 41 H 0.97006 * 119.99894 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0707 1.4312 0.0000 4 6 2.0784 -0.7936 1.2081 5 6 2.2653 -2.1862 0.6397 6 6 2.4436 -3.4085 1.2533 7 6 2.5742 -4.5547 0.4904 8 6 2.5313 -4.4725 -0.8895 9 6 2.3621 -3.2516 -1.5083 10 6 2.2327 -2.0914 -0.7463 11 7 2.0676 -0.7618 -1.1535 12 6 1.1546 -0.6721 -2.3009 13 6 1.0040 0.7918 -2.7197 14 6 0.1612 0.8735 -3.9940 15 6 0.0124 2.3155 -4.4061 16 1 0.4732 3.0954 -3.8181 17 6 -0.7112 2.6389 -5.5343 18 7 -0.8406 3.8971 -5.8942 19 14 -1.5076 1.2897 -6.5516 20 1 -2.8806 1.0341 -6.0468 21 1 -1.5740 1.7152 -7.9728 22 1 -0.7015 0.0473 -6.4440 23 1 -0.3633 0.3529 0.9652 24 1 -0.3634 0.6595 -0.7882 25 1 -0.3634 -1.0123 -0.1770 26 1 3.1599 1.4082 -0.0330 27 1 1.6919 1.9628 -0.8729 28 1 1.7454 1.9425 0.9060 29 1 1.3555 -0.8034 2.0238 30 1 3.0312 -0.3812 1.5403 31 1 2.4769 -3.4713 2.3310 32 1 2.7090 -5.5122 0.9714 33 1 2.6310 -5.3680 -1.4850 34 1 2.3298 -3.1942 -2.5862 35 1 1.5591 -1.2483 -3.1330 36 1 0.1799 -1.0722 -2.0218 37 1 0.5122 1.3490 -1.9224 38 1 1.9890 1.2191 -2.9074 39 1 0.6530 0.3163 -4.7913 40 1 -0.8238 0.4463 -3.8062 41 1 -1.3500 4.1246 -6.6877 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599660857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:27 Heat of formation + Delta-G solvation = 13.600027 kcal Electronic energy + Delta-G solvation = -19607.931659 eV Core-core repulsion = 16872.729824 eV Total energy + Delta-G solvation = -2735.201835 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.16071 -38.56601 -36.07655 -34.47200 -33.48729 -32.23197 -30.57629 -28.45731 -28.07715 -27.16055 -24.62901 -22.66481 -22.33811 -21.58640 -20.34295 -18.85131 -17.58267 -17.12890 -16.52080 -16.25776 -16.16880 -15.78646 -15.00263 -14.93221 -14.61396 -14.30178 -14.06485 -13.79666 -13.63401 -13.46299 -13.29618 -12.94220 -12.68467 -12.64318 -12.51139 -12.37989 -12.15375 -11.87445 -11.83164 -11.74465 -11.52850 -11.42024 -10.98793 -10.76719 -10.69994 -9.68220 -8.62450 -8.29996 -6.33860 0.48051 0.50260 1.34006 1.36178 1.47988 2.35058 2.63564 2.97183 3.05352 3.53483 3.62270 3.92924 4.01320 4.15033 4.18160 4.21138 4.26305 4.42921 4.48692 4.58661 4.62669 4.70322 4.77341 4.79028 4.82103 4.85908 4.92519 4.98496 5.01027 5.08736 5.15149 5.21373 5.37615 5.46045 5.54893 5.58112 5.62605 5.65304 5.66714 5.90079 6.08815 6.28662 6.35943 6.73743 7.30720 8.86811 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027798 B = 0.005078 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.009310 B = 5512.917214 C = 6228.212706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.096 3.904 3 C -0.139 4.139 4 C -0.068 4.068 5 C -0.155 4.155 6 C -0.086 4.086 7 C -0.150 4.150 8 C -0.099 4.099 9 C -0.161 4.161 10 C 0.077 3.923 11 N -0.476 5.476 12 C 0.056 3.944 13 C -0.096 4.096 14 C -0.009 4.009 15 C -0.529 4.529 16 H 0.033 0.967 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.948 3.052 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.249 1.249 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.018 0.982 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.207 -17.061 16.253 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 C -0.197 4.197 4 C -0.106 4.106 5 C -0.158 4.158 6 C -0.105 4.105 7 C -0.169 4.169 8 C -0.117 4.117 9 C -0.182 4.182 10 C -0.021 4.021 11 N -0.190 5.190 12 C -0.070 4.070 13 C -0.133 4.133 14 C -0.047 4.047 15 C -0.567 4.567 16 H 0.051 0.949 17 C -0.191 4.191 18 N -0.592 5.592 19 Si 0.772 3.228 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.173 1.173 23 H 0.105 0.895 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.162 0.838 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.036 0.964 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.605 -16.634 15.922 23.698 hybrid contribution -0.932 -0.054 -0.959 1.338 sum 4.674 -16.688 14.963 22.896 Atomic orbital electron populations 1.22435 0.94590 1.01885 1.03900 1.22263 0.93823 0.94958 0.88113 1.21959 1.01332 0.93436 1.02933 1.21412 1.02368 0.89939 0.96837 1.20788 1.05620 0.96174 0.93199 1.20709 0.98359 0.90512 1.00894 1.21326 1.02840 0.99077 0.93610 1.21168 0.98176 0.96793 0.95580 1.20716 1.06426 0.91430 0.99649 1.19982 0.98477 0.89092 0.94575 1.61048 1.43773 1.07037 1.07127 1.22271 0.94416 0.97975 0.92348 1.21666 0.99501 0.94443 0.97735 1.19491 0.95666 0.94802 0.94771 1.21440 1.32265 0.92900 1.10113 0.94893 1.25986 0.96671 0.97796 0.98672 1.70065 1.42977 1.19344 1.26766 0.85684 0.79519 0.80023 0.77597 1.19009 1.20920 1.17278 0.89473 0.91955 0.93085 0.92148 0.92763 0.89840 0.88341 0.89012 0.83903 0.83237 0.83768 0.86708 0.91191 0.93336 0.90989 0.93414 0.96614 0.96383 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.41 7.19 71.98 0.52 -3.90 16 2 C 0.10 2.52 0.67 3.79 0.00 2.52 16 3 C -0.14 -3.67 8.49 71.98 0.61 -3.06 16 4 C -0.07 -1.47 6.10 30.67 0.19 -1.29 16 5 C -0.15 -3.75 6.23 -19.49 -0.12 -3.87 16 6 C -0.09 -1.69 10.03 22.21 0.22 -1.47 16 7 C -0.15 -2.71 10.06 22.30 0.22 -2.49 16 8 C -0.10 -2.03 10.02 22.21 0.22 -1.81 16 9 C -0.16 -4.22 9.53 22.47 0.21 -4.00 16 10 C 0.08 2.20 5.86 38.29 0.22 2.43 16 11 N -0.48 -14.69 4.83 -641.57 -3.10 -17.79 16 12 C 0.06 1.89 4.14 86.30 0.36 2.25 16 13 C -0.10 -3.85 3.50 30.59 0.11 -3.74 16 14 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 15 C -0.53 -30.96 9.66 25.60 0.25 -30.71 16 16 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 17 C 0.01 0.32 5.47 84.66 0.46 0.79 16 18 N -0.95 -60.26 13.96 21.44 0.30 -59.96 16 19 Si 0.95 44.82 27.47 68.60 1.88 46.71 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 23 H 0.09 1.81 8.08 -2.39 -0.02 1.79 16 24 H 0.06 1.89 5.21 -2.39 -0.01 1.88 16 25 H 0.05 1.36 7.21 -2.39 -0.02 1.34 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.72 5.12 -2.39 -0.01 1.70 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.10 1.70 7.87 -2.39 -0.02 1.68 16 30 H 0.09 1.85 7.92 -2.38 -0.02 1.83 16 31 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.11 2.99 7.37 -2.91 -0.02 2.97 16 35 H 0.07 2.38 7.30 -2.39 -0.02 2.36 16 36 H 0.05 1.60 6.22 -2.39 -0.01 1.59 16 37 H 0.07 2.83 3.71 -2.39 -0.01 2.82 16 38 H 0.05 2.03 8.02 -2.39 -0.02 2.02 16 39 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 40 H 0.02 0.82 7.57 -2.39 -0.02 0.81 16 41 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 Total: -1.00 -67.65 313.54 3.63 -64.02 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.95 Total: 15.70 kcal Atomic # 6 Polarization: -52.28 SS G_CDS: 3.60 Total: -48.68 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -2.80 Total: -77.75 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.71 kcal Total: -67.65 3.63 -64.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599660857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.621 kcal (2) G-P(sol) polarization free energy of solvation -67.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds