Wall clock time and date at job start Mon Mar 30 2020 07:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47148 * 2 1 4 4 N 1.46900 * 109.46871 * 119.99401 * 2 1 3 5 5 C 1.46901 * 111.00044 * 274.99976 * 4 2 1 6 6 C 1.53001 * 109.47502 * 174.52555 * 5 4 2 7 7 C 1.50701 * 115.54850 * 39.77637 * 6 5 4 8 8 H 1.07995 * 120.00371 * 265.30730 * 7 6 5 9 9 C 1.37876 * 119.99603 * 85.30152 * 7 6 5 10 10 N 1.31512 * 120.00261 * 359.75550 * 9 7 6 11 11 Si 1.86807 * 120.00152 * 179.75348 * 9 7 6 12 12 H 1.48500 * 109.46974 * 60.00253 * 11 9 7 13 13 H 1.48496 * 109.47099 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46935 * 300.00098 * 11 9 7 15 15 C 1.53000 * 117.50032 * 254.07751 * 6 5 4 16 16 C 1.52997 * 117.50436 * 185.45263 * 6 5 4 17 17 C 1.52991 * 109.47220 * 239.99280 * 2 1 3 18 18 C 1.53782 * 113.61448 * 174.16250 * 17 2 1 19 19 C 1.53787 * 87.08521 * 220.02164 * 18 17 2 20 20 F 1.39895 * 113.61590 * 139.97639 * 19 18 17 21 21 F 1.39897 * 113.60971 * 270.80198 * 19 18 17 22 22 C 1.53786 * 87.17027 * 25.38911 * 19 18 17 23 23 H 1.08999 * 109.47108 * 184.80174 * 1 2 3 24 24 H 1.09000 * 109.47799 * 304.80122 * 1 2 3 25 25 H 1.09002 * 109.46893 * 64.80495 * 1 2 3 26 26 H 1.00902 * 110.99964 * 151.05452 * 4 2 1 27 27 H 1.09001 * 109.47388 * 294.52642 * 5 4 2 28 28 H 1.09000 * 109.47157 * 54.52670 * 5 4 2 29 29 H 0.97003 * 120.00417 * 185.03099 * 10 9 7 30 30 H 1.09007 * 117.49950 * 359.97438 * 15 6 5 31 31 H 1.09004 * 117.50076 * 145.01612 * 15 6 5 32 32 H 1.08997 * 117.49669 * 214.97740 * 16 6 5 33 33 H 1.08999 * 117.49661 * 359.97438 * 16 6 5 34 34 H 1.08997 * 112.91379 * 305.41534 * 17 2 1 35 35 H 1.08993 * 113.61641 * 105.47132 * 18 17 2 36 36 H 1.09003 * 113.61501 * 334.56948 * 18 17 2 37 37 H 1.08998 * 113.61505 * 89.15797 * 22 19 18 38 38 H 1.08998 * 113.61242 * 220.06499 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2228 2.3469 6 6 2.4640 -0.5609 3.6043 7 6 3.5124 -1.6263 3.4128 8 1 3.2164 -2.6492 3.2325 9 6 4.8497 -1.2952 3.4677 10 7 5.2103 -0.0488 3.6824 11 14 6.1496 -2.6169 3.2373 12 1 5.9892 -3.2409 1.8993 13 1 7.4995 -2.0070 3.3410 14 1 5.9932 -3.6536 4.2890 15 6 1.3616 -0.8304 4.6305 16 6 2.4575 0.1927 4.9358 17 6 2.0400 -0.7214 -1.2491 18 6 3.5669 -0.6540 -1.4190 19 6 3.3119 -0.4511 -2.9220 20 9 4.1632 0.4885 -3.5130 21 9 3.2375 -1.6470 -3.6441 22 6 1.9380 0.1207 -2.5340 23 1 -0.3633 -1.0240 0.0860 24 1 -0.3635 0.5865 0.8438 25 1 -0.3633 0.4375 -0.9299 26 1 2.9173 -1.1203 1.0289 27 1 2.8307 0.9924 2.1574 28 1 1.1087 0.6908 2.4921 29 1 6.1479 0.1976 3.6486 30 1 0.3646 -0.4490 4.4101 31 1 1.3946 -1.7785 5.1674 32 1 3.2114 -0.0823 5.6733 33 1 2.1818 1.2470 4.9159 34 1 1.6329 -1.7270 -1.3543 35 1 4.0740 -1.5899 -1.1847 36 1 4.0227 0.2087 -0.9332 37 1 1.9476 1.1956 -2.3534 38 1 1.1320 -0.1908 -3.1984 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600152506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:10 Heat of formation + Delta-G solvation = -64.683075 kcal Electronic energy + Delta-G solvation = -20130.011732 eV Core-core repulsion = 16837.185757 eV Total energy + Delta-G solvation = -3292.825975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.76323 -47.09839 -38.78854 -36.73051 -34.19618 -31.91250 -29.75635 -26.40227 -25.53647 -25.25372 -23.68916 -21.02742 -20.70535 -19.79840 -19.00125 -17.31856 -16.61000 -16.16285 -15.86726 -15.41989 -14.62802 -14.41726 -14.00960 -13.94311 -13.56668 -13.46405 -13.31651 -12.81632 -12.61622 -12.41373 -11.87195 -11.69475 -11.62945 -11.32536 -11.00554 -10.97189 -10.92735 -10.69116 -10.46112 -10.36615 -10.24158 -10.08652 -9.32659 -8.87129 -8.40807 -8.05840 -7.42151 -6.02331 -4.07952 3.28693 3.34931 3.37705 3.51581 3.82025 4.27088 4.37679 4.39590 4.43551 5.03361 5.25927 5.30077 5.39483 5.45069 5.46552 5.54780 5.57830 5.74843 5.84795 5.89581 6.09507 6.19255 6.24205 6.32585 6.42842 6.56594 6.58950 6.79542 6.83491 6.96090 7.17079 7.43726 7.57069 7.88265 8.06532 8.37474 8.53614 8.95620 9.56680 11.05518 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.006824 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.847158 B = 4102.137773 C = 5158.195563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.093 3.907 3 H 0.037 0.963 4 N -0.669 5.669 5 C 0.108 3.892 6 C 0.049 3.951 7 C -0.482 4.482 8 H 0.061 0.939 9 C 0.068 3.932 10 N -0.882 5.882 11 Si 0.884 3.116 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.277 1.277 15 C -0.208 4.208 16 C -0.160 4.160 17 C -0.100 4.100 18 C -0.164 4.164 19 C 0.251 3.749 20 F -0.195 7.195 21 F -0.183 7.183 22 C -0.157 4.157 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.354 0.646 27 H 0.025 0.975 28 H 0.039 0.961 29 H 0.259 0.741 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 1.569 -10.586 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.017 4.017 3 H 0.055 0.945 4 N -0.303 5.303 5 C -0.021 4.021 6 C 0.049 3.951 7 C -0.520 4.520 8 H 0.079 0.921 9 C -0.135 4.135 10 N -0.519 5.519 11 Si 0.712 3.288 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.245 4.245 16 C -0.198 4.198 17 C -0.118 4.118 18 C -0.202 4.202 19 C 0.214 3.786 20 F -0.176 7.176 21 F -0.164 7.164 22 C -0.195 4.195 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.175 0.825 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.429 1.423 -10.364 12.279 hybrid contribution 1.756 -0.099 -0.489 1.826 sum -4.673 1.325 -10.853 11.890 Atomic orbital electron populations 1.21762 0.95066 1.02299 1.00290 1.21395 0.95671 0.95275 0.89360 0.94476 1.60469 1.35154 1.32417 1.02234 1.21400 0.96687 0.92889 0.91114 1.18776 0.94015 0.96527 0.85813 1.20384 0.89140 0.93651 1.48825 0.92132 1.24994 0.98351 0.95222 0.94913 1.69996 1.16649 1.16653 1.48631 0.86786 0.80912 0.82223 0.78863 1.20147 1.21496 1.20282 1.22988 0.93126 0.99955 1.08449 1.22500 0.99930 0.93972 1.03362 1.22604 0.94375 1.00598 0.94262 1.24172 0.98984 1.06064 0.90993 1.22228 0.91957 0.75905 0.88489 1.92991 1.73276 1.64687 1.86670 1.92997 1.96692 1.46422 1.80245 1.24161 0.94654 1.02506 0.98221 0.91964 0.92900 0.93465 0.82509 0.95687 0.94287 0.93141 0.91966 0.90823 0.90111 0.92336 0.87381 0.88462 0.86956 0.87186 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.35 37.16 0.35 -1.45 16 2 C 0.09 1.38 2.34 -67.72 -0.16 1.22 16 3 H 0.04 0.57 7.79 -51.93 -0.40 0.16 16 4 N -0.67 -12.62 6.07 -106.73 -0.65 -13.27 16 5 C 0.11 2.30 5.58 -3.82 -0.02 2.28 16 6 C 0.05 1.18 1.81 -155.66 -0.28 0.89 16 7 C -0.48 -12.48 7.49 -34.44 -0.26 -12.74 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.07 1.77 5.42 -17.82 -0.10 1.68 16 10 N -0.88 -24.04 12.75 55.43 0.71 -23.33 16 11 Si 0.88 20.47 29.54 -169.99 -5.02 15.45 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C -0.21 -4.57 9.88 -26.73 -0.26 -4.83 16 16 C -0.16 -3.74 9.28 -26.73 -0.25 -3.99 16 17 C -0.10 -1.28 3.18 -89.72 -0.29 -1.57 16 18 C -0.16 -2.25 6.57 -25.91 -0.17 -2.42 16 19 C 0.25 3.29 3.27 -25.91 -0.08 3.21 16 20 F -0.20 -2.81 17.41 2.25 0.04 -2.77 16 21 F -0.18 -2.58 17.38 2.25 0.04 -2.54 16 22 C -0.16 -1.72 7.18 -25.82 -0.19 -1.90 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.73 7.50 -51.93 -0.39 0.35 16 25 H 0.05 0.51 7.92 -51.93 -0.41 0.10 16 26 H 0.35 7.19 6.61 -39.29 -0.26 6.93 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.78 7.21 -51.93 -0.37 0.40 16 29 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 30 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 31 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.11 1.60 8.10 -51.93 -0.42 1.18 16 37 H 0.11 1.11 8.05 -51.93 -0.42 0.69 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 318.32 15.07 4.80 4.80 Total: -1.00 -26.79 318.32 -7.82 -34.61 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.02 Total: 6.69 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -1.71 Total: -19.63 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.06 Total: -36.60 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.08 Total: -5.31 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.79 -7.82 -34.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600152506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.076 kcal (2) G-P(sol) polarization free energy of solvation -26.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds