Wall clock time and date at job start Mon Mar 30 2020 07:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47148 * 2 1 4 4 N 1.46900 * 109.46871 * 119.99401 * 2 1 3 5 5 C 1.46901 * 111.00044 * 274.99976 * 4 2 1 6 6 C 1.53001 * 109.47502 * 174.52555 * 5 4 2 7 7 C 1.50701 * 115.54850 * 39.77637 * 6 5 4 8 8 H 1.07995 * 120.00371 * 265.30730 * 7 6 5 9 9 C 1.37876 * 119.99603 * 85.30152 * 7 6 5 10 10 N 1.31512 * 120.00261 * 359.75550 * 9 7 6 11 11 Si 1.86807 * 120.00152 * 179.75348 * 9 7 6 12 12 H 1.48500 * 109.46974 * 60.00253 * 11 9 7 13 13 H 1.48496 * 109.47099 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46935 * 300.00098 * 11 9 7 15 15 C 1.53000 * 117.50032 * 254.07751 * 6 5 4 16 16 C 1.52997 * 117.50436 * 185.45263 * 6 5 4 17 17 C 1.52991 * 109.47220 * 239.99280 * 2 1 3 18 18 C 1.53782 * 113.61448 * 174.16250 * 17 2 1 19 19 C 1.53787 * 87.08521 * 220.02164 * 18 17 2 20 20 F 1.39895 * 113.61590 * 139.97639 * 19 18 17 21 21 F 1.39897 * 113.60971 * 270.80198 * 19 18 17 22 22 C 1.53786 * 87.17027 * 25.38911 * 19 18 17 23 23 H 1.08999 * 109.47108 * 184.80174 * 1 2 3 24 24 H 1.09000 * 109.47799 * 304.80122 * 1 2 3 25 25 H 1.09002 * 109.46893 * 64.80495 * 1 2 3 26 26 H 1.00902 * 110.99964 * 151.05452 * 4 2 1 27 27 H 1.09001 * 109.47388 * 294.52642 * 5 4 2 28 28 H 1.09000 * 109.47157 * 54.52670 * 5 4 2 29 29 H 0.97003 * 120.00417 * 185.03099 * 10 9 7 30 30 H 1.09007 * 117.49950 * 359.97438 * 15 6 5 31 31 H 1.09004 * 117.50076 * 145.01612 * 15 6 5 32 32 H 1.08997 * 117.49669 * 214.97740 * 16 6 5 33 33 H 1.08999 * 117.49661 * 359.97438 * 16 6 5 34 34 H 1.08997 * 112.91379 * 305.41534 * 17 2 1 35 35 H 1.08993 * 113.61641 * 105.47132 * 18 17 2 36 36 H 1.09003 * 113.61501 * 334.56948 * 18 17 2 37 37 H 1.08998 * 113.61505 * 89.15797 * 22 19 18 38 38 H 1.08998 * 113.61242 * 220.06499 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2228 2.3469 6 6 2.4640 -0.5609 3.6043 7 6 3.5124 -1.6263 3.4128 8 1 3.2164 -2.6492 3.2325 9 6 4.8497 -1.2952 3.4677 10 7 5.2103 -0.0488 3.6824 11 14 6.1496 -2.6169 3.2373 12 1 5.9892 -3.2409 1.8993 13 1 7.4995 -2.0070 3.3410 14 1 5.9932 -3.6536 4.2890 15 6 1.3616 -0.8304 4.6305 16 6 2.4575 0.1927 4.9358 17 6 2.0400 -0.7214 -1.2491 18 6 3.5669 -0.6540 -1.4190 19 6 3.3119 -0.4511 -2.9220 20 9 4.1632 0.4885 -3.5130 21 9 3.2375 -1.6470 -3.6441 22 6 1.9380 0.1207 -2.5340 23 1 -0.3633 -1.0240 0.0860 24 1 -0.3635 0.5865 0.8438 25 1 -0.3633 0.4375 -0.9299 26 1 2.9173 -1.1203 1.0289 27 1 2.8307 0.9924 2.1574 28 1 1.1087 0.6908 2.4921 29 1 6.1479 0.1976 3.6486 30 1 0.3646 -0.4490 4.4101 31 1 1.3946 -1.7785 5.1674 32 1 3.2114 -0.0823 5.6733 33 1 2.1818 1.2470 4.9159 34 1 1.6329 -1.7270 -1.3543 35 1 4.0740 -1.5899 -1.1847 36 1 4.0227 0.2087 -0.9332 37 1 1.9476 1.1956 -2.3534 38 1 1.1320 -0.1908 -3.1984 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600152506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:10 Heat of formation + Delta-G solvation = -78.356378 kcal Electronic energy + Delta-G solvation = -20130.604651 eV Core-core repulsion = 16837.185757 eV Total energy + Delta-G solvation = -3293.418894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.84048 -48.18654 -39.94480 -38.43690 -35.57417 -33.92404 -31.06880 -27.66854 -27.28988 -26.46436 -25.10097 -22.83027 -21.89354 -21.12558 -20.61805 -18.45513 -17.84928 -17.61603 -17.20424 -16.68155 -16.55159 -15.87966 -15.43756 -15.09744 -15.03249 -14.71590 -14.47210 -14.40786 -13.79295 -13.58710 -13.39804 -13.20571 -12.95428 -12.80632 -12.72254 -12.49350 -12.33592 -12.18668 -11.98749 -11.83191 -11.46615 -11.35866 -11.11248 -10.81136 -10.33403 -9.88166 -8.96850 -8.04326 -6.13959 1.42803 1.45434 1.50945 2.45289 2.49371 2.79374 3.17851 3.24873 3.32434 3.38548 3.57695 3.84746 4.17514 4.31204 4.42625 4.48449 4.49275 4.62726 4.64698 4.66934 4.76396 4.78838 4.86688 4.92519 5.03552 5.12051 5.14486 5.20488 5.29923 5.32143 5.53967 5.67125 5.70616 5.83170 6.44601 6.62024 6.79861 6.94471 7.52824 9.02673 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.006824 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.847158 B = 4102.137773 C = 5158.195563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.092 3.908 3 H 0.035 0.965 4 N -0.674 5.674 5 C 0.123 3.877 6 C 0.024 3.976 7 C -0.487 4.487 8 H 0.051 0.949 9 C 0.029 3.971 10 N -0.908 5.908 11 Si 0.937 3.063 12 H -0.267 1.267 13 H -0.291 1.291 14 H -0.279 1.279 15 C -0.187 4.187 16 C -0.166 4.166 17 C -0.094 4.094 18 C -0.172 4.172 19 C 0.246 3.754 20 F -0.204 7.204 21 F -0.188 7.188 22 C -0.137 4.137 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.342 0.658 27 H -0.002 1.002 28 H 0.054 0.946 29 H 0.256 0.744 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.429 1.461 -11.843 14.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.018 4.018 3 H 0.053 0.947 4 N -0.306 5.306 5 C -0.007 4.007 6 C 0.023 3.977 7 C -0.525 4.525 8 H 0.069 0.931 9 C -0.171 4.171 10 N -0.546 5.546 11 Si 0.764 3.236 12 H -0.192 1.192 13 H -0.217 1.217 14 H -0.205 1.205 15 C -0.225 4.225 16 C -0.204 4.204 17 C -0.113 4.113 18 C -0.210 4.210 19 C 0.210 3.790 20 F -0.185 7.185 21 F -0.169 7.169 22 C -0.175 4.175 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.162 0.838 27 H 0.016 0.984 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.858 1.308 -11.630 14.097 hybrid contribution 2.189 -0.083 -0.074 2.192 sum -5.668 1.225 -11.705 13.063 Atomic orbital electron populations 1.21728 0.93309 1.02229 1.01602 1.21513 0.96874 0.94915 0.88456 0.94729 1.60476 1.34295 1.32428 1.03366 1.21161 0.96380 0.92163 0.90975 1.19003 0.94757 0.96801 0.87090 1.20544 0.89983 0.93727 1.48229 0.93121 1.25538 0.99937 0.96685 0.94939 1.70099 1.16650 1.18065 1.49831 0.85941 0.78635 0.80049 0.78988 1.19180 1.21745 1.20454 1.22982 0.93669 0.99216 1.06590 1.22392 1.00318 0.94946 1.02782 1.22530 0.93344 1.01063 0.94370 1.24191 0.99796 1.05173 0.91871 1.22380 0.93178 0.75766 0.87644 1.92975 1.73800 1.64940 1.86736 1.92985 1.96759 1.46883 1.80302 1.24112 0.93728 1.02824 0.96820 0.92329 0.93687 0.90451 0.83837 0.98350 0.92809 0.93469 0.89416 0.91168 0.92729 0.91223 0.87027 0.89473 0.87941 0.85892 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.35 71.98 0.67 -2.40 16 2 C 0.09 2.56 2.34 44.91 0.11 2.67 16 3 H 0.03 1.00 7.79 -2.39 -0.02 0.98 16 4 N -0.67 -24.89 6.07 -491.59 -2.98 -27.87 16 5 C 0.12 5.15 5.58 86.30 0.48 5.63 16 6 C 0.02 1.14 1.81 -52.93 -0.10 1.05 16 7 C -0.49 -25.34 7.49 25.60 0.19 -25.15 16 8 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 9 C 0.03 1.52 5.42 84.65 0.46 1.98 16 10 N -0.91 -50.27 12.75 21.45 0.27 -50.00 16 11 Si 0.94 42.33 29.54 68.60 2.03 44.36 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 15 C -0.19 -8.00 9.88 30.59 0.30 -7.69 16 16 C -0.17 -7.79 9.28 30.59 0.28 -7.50 16 17 C -0.09 -2.24 3.18 -10.21 -0.03 -2.27 16 18 C -0.17 -4.61 6.57 31.12 0.20 -4.41 16 19 C 0.25 6.08 3.27 31.12 0.10 6.18 16 20 F -0.20 -5.60 17.41 44.97 0.78 -4.81 16 21 F -0.19 -5.01 17.38 44.97 0.78 -4.23 16 22 C -0.14 -2.57 7.18 31.18 0.22 -2.35 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.04 1.13 7.50 -2.39 -0.02 1.11 16 25 H 0.08 1.36 7.92 -2.39 -0.02 1.34 16 26 H 0.34 13.93 6.61 -89.69 -0.59 13.34 16 27 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.05 2.07 7.21 -2.39 -0.02 2.05 16 29 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 30 H 0.09 3.28 8.08 -2.38 -0.02 3.26 16 31 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.05 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.10 2.94 8.10 -2.39 -0.02 2.92 16 37 H 0.12 2.06 8.05 -2.39 -0.02 2.04 16 38 H 0.12 1.68 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -56.74 318.32 4.23 -52.51 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.45 Total: 24.33 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 2.90 Total: -34.28 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -2.71 Total: -77.88 kcal Atomic # 9 Polarization: -10.60 SS G_CDS: 1.56 Total: -9.04 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -56.74 4.23 -52.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600152506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.844 kcal (2) G-P(sol) polarization free energy of solvation -56.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds