Wall clock time and date at job start Mon Mar 30 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47234 * 2 1 4 4 C 1.53002 * 109.47221 * 120.00621 * 2 1 3 5 5 C 1.50705 * 109.46894 * 294.99526 * 4 2 1 6 6 H 1.08010 * 119.99720 * 359.97438 * 5 4 2 7 7 C 1.37870 * 119.99975 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99956 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00228 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46866 * 89.99944 * 9 7 5 11 11 H 1.48498 * 109.47228 * 209.99913 * 9 7 5 12 12 H 1.48499 * 109.47216 * 330.00486 * 9 7 5 13 13 N 1.46505 * 109.46884 * 240.00235 * 2 1 3 14 14 C 1.36034 * 126.34768 * 120.29855 * 13 2 1 15 15 C 1.50698 * 124.95130 * 0.02562 * 14 13 2 16 16 N 1.46902 * 109.46974 * 266.49180 * 15 14 13 17 17 N 1.30115 * 110.09775 * 180.02562 * 14 13 2 18 18 C 1.35786 * 109.64420 * 0.02562 * 17 14 13 19 19 C 1.39735 * 133.60160 * 180.02562 * 18 17 14 20 20 C 1.36606 * 119.88875 * 179.97438 * 19 18 17 21 21 C 1.38782 * 120.66414 * 359.97438 * 20 19 18 22 22 C 1.37851 * 120.45373 * 359.97438 * 21 20 19 23 23 C 1.38057 * 126.34765 * 300.29887 * 13 2 1 24 24 H 1.08999 * 109.46738 * 65.55479 * 1 2 3 25 25 H 1.08999 * 109.47059 * 185.56036 * 1 2 3 26 26 H 1.09005 * 109.46714 * 305.56063 * 1 2 3 27 27 H 1.08993 * 109.47187 * 54.99489 * 4 2 1 28 28 H 1.08997 * 109.47209 * 175.00139 * 4 2 1 29 29 H 0.97000 * 119.99879 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.47117 * 26.49101 * 15 14 13 31 31 H 1.09000 * 109.46718 * 146.49681 * 15 14 13 32 32 H 1.00904 * 110.99746 * 180.02562 * 16 15 14 33 33 H 1.00903 * 111.00169 * 303.95322 * 16 15 14 34 34 H 1.08003 * 120.06048 * 359.97403 * 19 18 17 35 35 H 1.07998 * 119.66877 * 179.72193 * 20 19 18 36 36 H 1.08004 * 119.77147 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.15276 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.6415 0.0569 2.4766 6 1 1.0808 0.9746 2.3757 7 6 1.9934 -0.4019 3.7282 8 7 1.6459 0.2776 4.7993 9 14 2.9636 -1.9885 3.9027 10 1 4.4172 -1.6851 3.8778 11 1 2.6163 -2.6421 5.1900 12 1 2.6289 -2.8996 2.7788 13 7 2.0183 -0.6906 -1.1963 14 6 2.8082 -0.1592 -2.1680 15 6 3.3266 1.2557 -2.1815 16 7 2.4093 2.1059 -2.9521 17 7 3.0509 -1.0508 -3.0841 18 6 2.4322 -2.2159 -2.7625 19 6 2.3584 -3.4692 -3.3760 20 6 1.6372 -4.4716 -2.7921 21 6 0.9744 -4.2598 -1.5913 22 6 1.0340 -3.0319 -0.9675 23 6 1.7621 -2.0012 -1.5463 24 1 -0.3633 0.4253 -0.9356 25 1 -0.3633 -1.0228 0.0996 26 1 -0.3633 0.5977 0.8361 27 1 1.6054 -1.7199 1.2950 28 1 3.1263 -0.7996 1.2055 29 1 1.8939 -0.0450 5.6799 30 1 3.3943 1.6276 -1.1592 31 1 4.3144 1.2763 -2.6419 32 1 2.7354 3.0605 -2.9764 33 1 2.2794 1.7447 -3.8853 34 1 2.8708 -3.6451 -4.3104 35 1 1.5789 -5.4375 -3.2716 36 1 0.4086 -5.0627 -1.1421 37 1 0.5159 -2.8723 -0.0334 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686518318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:46 Heat of formation + Delta-G solvation = 63.363000 kcal Electronic energy + Delta-G solvation = -19433.010807 eV Core-core repulsion = 16596.426513 eV Total energy + Delta-G solvation = -2836.584294 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90261 -37.32228 -35.78241 -34.44183 -32.76067 -31.05324 -29.57613 -29.11208 -27.67067 -25.59060 -23.85584 -22.13851 -21.70337 -20.44376 -19.39091 -17.33147 -17.02171 -16.24089 -15.82739 -15.39863 -14.75630 -14.45775 -14.28381 -13.89768 -13.76371 -13.32612 -13.18032 -12.89935 -12.32909 -12.27068 -11.87333 -11.72243 -11.46285 -11.28669 -11.16344 -10.85441 -10.59256 -10.36329 -9.95745 -9.72254 -9.53438 -9.39579 -8.88417 -8.69797 -7.98005 -7.74066 -6.20728 -4.21614 1.23071 1.84930 3.01223 3.06909 3.20817 3.29365 3.33683 4.15860 4.26003 4.31396 4.68669 4.74704 5.09300 5.17567 5.22559 5.23725 5.40203 5.47258 5.68088 5.71061 5.71988 5.87504 5.91708 5.99187 6.28529 6.42354 6.47903 6.66994 6.76215 6.80041 6.83940 6.89350 6.93107 7.11842 7.16906 7.29100 7.45645 7.66274 8.19954 8.30937 8.80199 9.39981 10.91397 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.007832 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.875755 B = 3574.050602 C = 4599.401778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.143 3.857 3 H 0.100 0.900 4 C -0.018 4.018 5 C -0.523 4.523 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.895 5.895 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.265 1.265 13 N -0.460 5.460 14 C 0.281 3.719 15 C 0.139 3.861 16 N -0.841 5.841 17 N -0.506 5.506 18 C 0.040 3.960 19 C -0.073 4.073 20 C -0.133 4.133 21 C -0.116 4.116 22 C -0.098 4.098 23 C 0.058 3.942 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.026 0.974 28 H 0.016 0.984 29 H 0.266 0.734 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.349 0.651 33 H 0.347 0.653 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -2.964 -14.134 14.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.043 3.957 3 H 0.117 0.883 4 C -0.056 4.056 5 C -0.561 4.561 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.189 1.189 13 N -0.146 5.146 14 C 0.015 3.985 15 C 0.007 3.993 16 N -0.374 5.374 17 N -0.227 5.227 18 C -0.079 4.079 19 C -0.093 4.093 20 C -0.154 4.154 21 C -0.136 4.136 22 C -0.119 4.119 23 C -0.053 4.053 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.044 0.956 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.509 -2.925 -13.947 14.260 hybrid contribution 0.897 -0.799 0.472 1.291 sum 1.406 -3.724 -13.475 14.050 Atomic orbital electron populations 1.22020 0.93676 1.02721 1.01955 1.21696 0.95458 0.96745 0.81841 0.88251 1.19969 0.96353 0.96916 0.92365 1.20862 1.36817 1.09889 0.88518 0.90335 1.24923 0.95262 0.96809 0.95780 1.69885 1.46183 1.39027 0.98157 0.86871 0.80801 0.84399 0.77878 1.20191 1.21052 1.18935 1.45891 1.39486 1.08879 1.20375 1.23241 0.93165 0.96252 0.85823 1.20151 0.93786 0.84652 1.00740 1.58605 1.51998 1.05664 1.21093 1.70310 1.25908 0.99717 1.26778 1.19037 1.00294 0.94089 0.94507 1.19869 0.99793 0.89939 0.99659 1.20530 0.99545 0.98736 0.96554 1.20828 1.00727 0.96137 0.95904 1.20236 0.99902 0.91376 1.00371 1.18870 1.02562 0.86364 0.97464 0.93454 0.92627 0.89493 0.95617 0.96603 0.92438 0.88465 0.91988 0.83672 0.83987 0.86064 0.85956 0.85729 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.91 37.16 0.33 -2.31 16 2 C 0.14 2.77 2.92 -67.93 -0.20 2.57 16 3 H 0.10 1.87 6.55 -51.93 -0.34 1.53 16 4 C -0.02 -0.41 3.53 -27.88 -0.10 -0.51 16 5 C -0.52 -13.82 9.03 -34.44 -0.31 -14.13 16 6 H 0.08 2.19 7.31 -52.48 -0.38 1.80 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 9 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 13 N -0.46 -8.59 2.65 -104.10 -0.28 -8.87 16 14 C 0.28 4.87 7.37 -154.82 -1.14 3.73 16 15 C 0.14 1.85 6.98 -4.98 -0.03 1.82 16 16 N -0.84 -9.66 9.61 -11.41 -0.11 -9.77 16 17 N -0.51 -9.23 11.27 -8.24 -0.09 -9.33 16 18 C 0.04 0.74 7.23 -84.70 -0.61 0.13 16 19 C -0.07 -1.12 10.05 -39.61 -0.40 -1.51 16 20 C -0.13 -1.80 9.96 -39.97 -0.40 -2.20 16 21 C -0.12 -1.67 10.03 -39.52 -0.40 -2.07 16 22 C -0.10 -1.70 8.98 -39.50 -0.35 -2.05 16 23 C 0.06 1.10 6.24 -83.99 -0.52 0.58 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.99 6.47 -51.93 -0.34 0.66 16 26 H 0.09 1.63 7.12 -51.93 -0.37 1.26 16 27 H 0.03 0.60 5.58 -51.93 -0.29 0.31 16 28 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.10 1.30 6.88 -51.93 -0.36 0.95 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.35 3.00 9.08 -39.29 -0.36 2.65 16 33 H 0.35 3.88 8.99 -39.29 -0.35 3.52 16 34 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 37 H 0.13 2.20 5.97 -52.49 -0.31 1.88 16 LS Contribution 302.67 15.07 4.56 4.56 Total: -1.00 -30.91 302.67 -8.82 -39.73 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.77 Total: 6.64 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -4.23 Total: -13.97 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.29 Total: -53.49 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.91 -8.82 -39.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686518318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.088 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds