Wall clock time and date at job start Mon Mar 30 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47234 * 2 1 4 4 C 1.53002 * 109.47221 * 120.00621 * 2 1 3 5 5 C 1.50705 * 109.46894 * 294.99526 * 4 2 1 6 6 H 1.08010 * 119.99720 * 359.97438 * 5 4 2 7 7 C 1.37870 * 119.99975 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99956 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00228 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46866 * 89.99944 * 9 7 5 11 11 H 1.48498 * 109.47228 * 209.99913 * 9 7 5 12 12 H 1.48499 * 109.47216 * 330.00486 * 9 7 5 13 13 N 1.46505 * 109.46884 * 240.00235 * 2 1 3 14 14 C 1.36034 * 126.34768 * 120.29855 * 13 2 1 15 15 C 1.50698 * 124.95130 * 0.02562 * 14 13 2 16 16 N 1.46902 * 109.46974 * 266.49180 * 15 14 13 17 17 N 1.30115 * 110.09775 * 180.02562 * 14 13 2 18 18 C 1.35786 * 109.64420 * 0.02562 * 17 14 13 19 19 C 1.39735 * 133.60160 * 180.02562 * 18 17 14 20 20 C 1.36606 * 119.88875 * 179.97438 * 19 18 17 21 21 C 1.38782 * 120.66414 * 359.97438 * 20 19 18 22 22 C 1.37851 * 120.45373 * 359.97438 * 21 20 19 23 23 C 1.38057 * 126.34765 * 300.29887 * 13 2 1 24 24 H 1.08999 * 109.46738 * 65.55479 * 1 2 3 25 25 H 1.08999 * 109.47059 * 185.56036 * 1 2 3 26 26 H 1.09005 * 109.46714 * 305.56063 * 1 2 3 27 27 H 1.08993 * 109.47187 * 54.99489 * 4 2 1 28 28 H 1.08997 * 109.47209 * 175.00139 * 4 2 1 29 29 H 0.97000 * 119.99879 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.47117 * 26.49101 * 15 14 13 31 31 H 1.09000 * 109.46718 * 146.49681 * 15 14 13 32 32 H 1.00904 * 110.99746 * 180.02562 * 16 15 14 33 33 H 1.00903 * 111.00169 * 303.95322 * 16 15 14 34 34 H 1.08003 * 120.06048 * 359.97403 * 19 18 17 35 35 H 1.07998 * 119.66877 * 179.72193 * 20 19 18 36 36 H 1.08004 * 119.77147 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.15276 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.6415 0.0569 2.4766 6 1 1.0808 0.9746 2.3757 7 6 1.9934 -0.4019 3.7282 8 7 1.6459 0.2776 4.7993 9 14 2.9636 -1.9885 3.9027 10 1 4.4172 -1.6851 3.8778 11 1 2.6163 -2.6421 5.1900 12 1 2.6289 -2.8996 2.7788 13 7 2.0183 -0.6906 -1.1963 14 6 2.8082 -0.1592 -2.1680 15 6 3.3266 1.2557 -2.1815 16 7 2.4093 2.1059 -2.9521 17 7 3.0509 -1.0508 -3.0841 18 6 2.4322 -2.2159 -2.7625 19 6 2.3584 -3.4692 -3.3760 20 6 1.6372 -4.4716 -2.7921 21 6 0.9744 -4.2598 -1.5913 22 6 1.0340 -3.0319 -0.9675 23 6 1.7621 -2.0012 -1.5463 24 1 -0.3633 0.4253 -0.9356 25 1 -0.3633 -1.0228 0.0996 26 1 -0.3633 0.5977 0.8361 27 1 1.6054 -1.7199 1.2950 28 1 3.1263 -0.7996 1.2055 29 1 1.8939 -0.0450 5.6799 30 1 3.3943 1.6276 -1.1592 31 1 4.3144 1.2763 -2.6419 32 1 2.7354 3.0605 -2.9764 33 1 2.2794 1.7447 -3.8853 34 1 2.8708 -3.6451 -4.3104 35 1 1.5789 -5.4375 -3.2716 36 1 0.4086 -5.0627 -1.1421 37 1 0.5159 -2.8723 -0.0334 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686518318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:46 Heat of formation + Delta-G solvation = 43.264073 kcal Electronic energy + Delta-G solvation = -19433.882362 eV Core-core repulsion = 16596.426513 eV Total energy + Delta-G solvation = -2837.455849 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.19669 -38.53388 -37.32694 -35.45783 -34.72326 -32.55218 -30.92872 -30.28956 -29.41735 -26.67634 -25.59521 -23.57364 -22.92388 -21.92104 -20.77772 -19.10238 -18.38362 -17.57534 -17.06717 -16.72350 -16.27410 -15.84713 -15.56653 -15.40142 -15.04940 -14.71178 -14.58461 -14.34188 -14.10631 -13.46402 -13.42572 -13.08569 -12.88902 -12.80487 -12.56680 -12.38067 -12.12390 -12.08410 -11.81755 -11.42437 -11.16301 -10.91747 -10.82139 -9.80501 -9.22889 -9.00333 -8.35254 -6.39349 0.01472 0.63787 1.27743 1.31505 1.40913 1.70768 1.75371 2.28023 2.94655 2.99353 3.10322 3.48426 3.70817 3.75049 4.05718 4.12314 4.16413 4.24618 4.29981 4.40402 4.50933 4.55557 4.66543 4.79148 4.82725 4.94775 5.06016 5.12082 5.21169 5.33470 5.46927 5.57893 5.60409 5.69459 5.97409 6.03316 6.14972 6.25202 6.53019 6.66516 6.89602 7.25041 8.79840 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.007832 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.875755 B = 3574.050602 C = 4599.401778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.154 3.846 3 H 0.102 0.898 4 C -0.008 4.008 5 C -0.519 4.519 6 H 0.054 0.946 7 C 0.022 3.978 8 N -0.938 5.938 9 Si 0.931 3.069 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.257 1.257 13 N -0.470 5.470 14 C 0.273 3.727 15 C 0.142 3.858 16 N -0.844 5.844 17 N -0.518 5.518 18 C 0.014 3.986 19 C -0.080 4.080 20 C -0.121 4.121 21 C -0.105 4.105 22 C -0.127 4.127 23 C 0.031 3.969 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.022 0.978 28 H 0.007 0.993 29 H 0.268 0.732 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.366 0.634 33 H 0.350 0.650 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -4.793 -15.793 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.052 3.948 3 H 0.120 0.880 4 C -0.046 4.046 5 C -0.557 4.557 6 H 0.072 0.928 7 C -0.177 4.177 8 N -0.577 5.577 9 Si 0.756 3.244 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.181 1.181 13 N -0.158 5.158 14 C 0.007 3.993 15 C 0.009 3.991 16 N -0.378 5.378 17 N -0.240 5.240 18 C -0.105 4.105 19 C -0.100 4.100 20 C -0.141 4.141 21 C -0.124 4.124 22 C -0.147 4.147 23 C -0.079 4.079 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.041 0.959 28 H 0.025 0.975 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.182 0.818 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.182 0.818 36 H 0.174 0.826 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.880 -4.756 -15.638 16.369 hybrid contribution 0.741 -0.256 0.908 1.200 sum 1.621 -5.012 -14.730 15.644 Atomic orbital electron populations 1.21901 0.92948 1.02506 1.02041 1.21374 0.95939 0.96346 0.81098 0.88022 1.19784 0.95625 0.96530 0.92658 1.21089 1.35526 1.09154 0.89930 0.92759 1.25691 0.96465 0.99925 0.95628 1.70003 1.48032 1.40959 0.98751 0.85941 0.79450 0.80864 0.78141 1.19769 1.20459 1.18098 1.45795 1.40411 1.09243 1.20333 1.23927 0.92583 0.97501 0.85270 1.20204 0.94681 0.83083 1.01088 1.58550 1.51734 1.06438 1.21115 1.70307 1.26362 1.00110 1.27190 1.19529 1.00898 0.95169 0.94930 1.20270 1.00060 0.89208 1.00423 1.20998 0.97499 0.99872 0.95753 1.21277 0.99716 0.95632 0.95787 1.20388 1.01037 0.92525 1.00787 1.19240 1.03669 0.86679 0.98299 0.92168 0.92710 0.90713 0.95926 0.97486 0.92283 0.88802 0.90325 0.81783 0.83678 0.84084 0.81816 0.82635 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 8.91 71.98 0.64 -4.32 16 2 C 0.15 5.97 2.92 44.99 0.13 6.11 16 3 H 0.10 3.86 6.55 -2.39 -0.02 3.84 16 4 C -0.01 -0.36 3.53 29.85 0.11 -0.26 16 5 C -0.52 -27.92 9.03 25.60 0.23 -27.69 16 6 H 0.05 3.13 7.31 -2.91 -0.02 3.10 16 7 C 0.02 1.21 5.47 84.65 0.46 1.67 16 8 N -0.94 -56.13 13.96 21.45 0.30 -55.83 16 9 Si 0.93 43.71 27.47 68.60 1.88 45.60 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.26 -11.62 6.54 99.48 0.65 -10.97 16 13 N -0.47 -17.45 2.65 -483.27 -1.28 -18.73 16 14 C 0.27 9.30 7.37 137.92 1.02 10.32 16 15 C 0.14 3.66 6.98 85.56 0.60 4.26 16 16 N -0.84 -18.36 9.61 -190.01 -1.83 -20.19 16 17 N -0.52 -18.48 11.27 -179.97 -2.03 -20.51 16 18 C 0.01 0.48 7.23 39.45 0.29 0.76 16 19 C -0.08 -2.24 10.05 22.25 0.22 -2.02 16 20 C -0.12 -2.80 9.96 22.02 0.22 -2.58 16 21 C -0.10 -2.69 10.03 22.31 0.22 -2.47 16 22 C -0.13 -4.23 8.98 22.32 0.20 -4.03 16 23 C 0.03 1.15 6.24 38.86 0.24 1.39 16 24 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 1.97 6.47 -2.39 -0.02 1.96 16 26 H 0.07 2.87 7.12 -2.38 -0.02 2.85 16 27 H 0.02 1.05 5.58 -2.39 -0.01 1.04 16 28 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16 29 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.09 2.47 6.88 -2.39 -0.02 2.45 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.37 5.74 9.08 -89.69 -0.81 4.93 16 33 H 0.35 7.39 8.99 -89.69 -0.81 6.58 16 34 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 35 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 37 H 0.12 4.00 5.97 -2.91 -0.02 3.98 16 Total: -1.00 -66.73 302.67 1.06 -65.68 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.57 Total: 22.83 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 4.58 Total: -18.85 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -4.84 Total: -115.26 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal Total: -66.73 1.06 -65.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686518318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.941 kcal (2) G-P(sol) polarization free energy of solvation -66.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds