Wall clock time and date at job start Mon Mar 30 2020 07:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46582 * 2 1 4 4 C 1.53005 * 109.46874 * 240.00526 * 2 1 3 5 5 C 1.50695 * 109.47093 * 65.71789 * 4 2 1 6 6 H 1.07994 * 120.00341 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99523 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00420 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99742 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47000 * 90.00119 * 9 7 5 11 11 H 1.48498 * 109.46839 * 210.00059 * 9 7 5 12 12 H 1.48498 * 109.47145 * 330.00126 * 9 7 5 13 13 N 1.46499 * 109.47136 * 120.00512 * 2 1 3 14 14 C 1.36042 * 126.34640 * 240.47519 * 13 2 1 15 15 C 1.50699 * 124.94740 * 359.97438 * 14 13 2 16 16 N 1.46893 * 109.47098 * 266.05221 * 15 14 13 17 17 N 1.30106 * 110.09661 * 179.97438 * 14 13 2 18 18 C 1.35786 * 109.64541 * 359.97438 * 17 14 13 19 19 C 1.39739 * 133.60029 * 179.97438 * 18 17 14 20 20 C 1.36601 * 119.88855 * 180.02562 * 19 18 17 21 21 C 1.38774 * 120.66699 * 0.02562 * 20 19 18 22 22 C 1.37857 * 120.44980 * 359.97382 * 21 20 19 23 23 C 1.38050 * 126.34964 * 60.47658 * 13 2 1 24 24 H 1.09004 * 109.47296 * 303.50845 * 1 2 3 25 25 H 1.08996 * 109.46998 * 63.50696 * 1 2 3 26 26 H 1.09000 * 109.47321 * 183.50520 * 1 2 3 27 27 H 1.08999 * 109.46911 * 185.72187 * 4 2 1 28 28 H 1.09003 * 109.46781 * 305.71496 * 4 2 1 29 29 H 0.96999 * 120.00039 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47381 * 26.05846 * 15 14 13 31 31 H 1.09004 * 109.46882 * 146.05510 * 15 14 13 32 32 H 1.00903 * 111.00240 * 61.60733 * 16 15 14 33 33 H 1.00903 * 111.00210 * 185.55141 * 16 15 14 34 34 H 1.08003 * 120.05172 * 359.97438 * 19 18 17 35 35 H 1.07994 * 119.66413 * 179.72273 * 20 19 18 36 36 H 1.07997 * 119.77533 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.15098 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6565 0.0664 -2.4756 6 1 1.1040 0.9887 -2.3741 7 6 2.0112 -0.3908 -3.7272 8 7 2.6836 -1.5142 -3.8508 9 14 1.5365 0.5858 -5.2473 10 1 2.6140 1.5558 -5.5689 11 1 1.3471 -0.3412 -6.3918 12 1 0.2712 1.3190 -4.9894 13 7 2.0184 -0.6907 1.1961 14 6 2.7962 -0.1552 2.1753 15 6 3.2988 1.2654 2.1985 16 7 4.6398 1.3202 1.6015 17 7 3.0430 -1.0482 3.0888 18 6 2.4392 -2.2185 2.7579 19 6 2.3755 -3.4754 3.3653 20 6 1.6692 -4.4830 2.7722 21 6 1.0116 -4.2730 1.5683 22 6 1.0606 -3.0413 0.9511 23 6 1.7745 -2.0057 1.5385 24 1 -0.3634 0.5673 0.8569 25 1 -0.3633 0.4584 -0.9197 26 1 -0.3634 -1.0257 0.0628 27 1 3.1251 -0.8108 -1.1996 28 1 1.5954 -1.7150 -1.3020 29 1 2.9327 -1.8359 -4.7313 30 1 2.6208 1.9000 1.6279 31 1 3.3452 1.6176 3.2290 32 1 4.6189 1.0232 0.6374 33 1 5.0360 2.2442 1.6865 34 1 2.8846 -3.6501 4.3017 35 1 1.6261 -5.4542 3.2425 36 1 0.4570 -5.0797 1.1123 37 1 0.5467 -2.8831 0.0144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686518320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:49 Heat of formation + Delta-G solvation = 60.449973 kcal Electronic energy + Delta-G solvation = -19405.011022 eV Core-core repulsion = 16568.300410 eV Total energy + Delta-G solvation = -2836.710612 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.78153 -37.21500 -35.66767 -34.32673 -32.82971 -30.89342 -29.37861 -28.99250 -27.23427 -25.47473 -24.04990 -22.20960 -21.55744 -20.56436 -19.32533 -17.00776 -16.72645 -16.06095 -15.88674 -15.27530 -14.75600 -14.59698 -14.26332 -13.80315 -13.65764 -13.15016 -13.00115 -12.69586 -12.23884 -12.16368 -11.83395 -11.63874 -11.30943 -11.15522 -11.06872 -10.86575 -10.71044 -10.36182 -10.21167 -9.54698 -9.42486 -9.32149 -8.72569 -8.56669 -7.85790 -7.60633 -6.20728 -4.26877 1.36039 1.97356 3.08277 3.18399 3.20825 3.26617 3.28110 4.26941 4.29140 4.40452 4.76288 4.90849 5.13364 5.20063 5.26844 5.34714 5.44227 5.53395 5.68352 5.81266 5.84321 5.87651 5.95919 6.11032 6.26825 6.46603 6.57658 6.61834 6.88649 6.95122 6.98340 7.04105 7.29455 7.35133 7.42005 7.45086 7.62108 7.78997 8.09159 8.36620 8.77715 9.38572 10.89866 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019228 B = 0.006804 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.854274 B = 4113.939409 C = 4998.061641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 H 0.087 0.913 4 C 0.021 3.979 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.467 5.467 14 C 0.276 3.724 15 C 0.144 3.856 16 N -0.840 5.840 17 N -0.489 5.489 18 C 0.038 3.962 19 C -0.073 4.073 20 C -0.134 4.134 21 C -0.116 4.116 22 C -0.095 4.095 23 C 0.062 3.938 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.022 0.978 28 H 0.028 0.972 29 H 0.264 0.736 30 H 0.048 0.952 31 H 0.101 0.899 32 H 0.350 0.650 33 H 0.348 0.652 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.691 1.474 9.835 10.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.030 3.970 3 H 0.105 0.895 4 C -0.017 4.017 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.523 5.523 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.155 5.155 14 C 0.010 3.990 15 C 0.012 3.988 16 N -0.372 5.372 17 N -0.210 5.210 18 C -0.081 4.081 19 C -0.092 4.092 20 C -0.155 4.155 21 C -0.136 4.136 22 C -0.116 4.116 23 C -0.049 4.049 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.988 1.039 10.850 11.080 hybrid contribution -1.034 1.005 -2.432 2.827 sum -3.023 2.043 8.419 9.175 Atomic orbital electron populations 1.22092 0.94283 1.02397 1.02143 1.21921 0.94997 0.96513 0.83562 0.89524 1.19447 0.96967 0.96286 0.88963 1.20979 1.36992 1.08234 0.90461 0.92256 1.24993 0.94804 0.94982 0.99200 1.69966 1.37911 1.20474 1.23961 0.86548 0.78930 0.79815 0.82465 1.20531 1.21052 1.19770 1.45913 1.40752 1.08779 1.20024 1.23253 0.93301 0.96694 0.85714 1.20068 0.89917 0.87055 1.01751 1.58507 1.21387 1.32593 1.24729 1.70321 1.24138 0.99184 1.27335 1.19091 1.00466 0.94140 0.94449 1.19868 0.99730 0.89920 0.99720 1.20513 0.99802 0.98607 0.96550 1.20810 1.00845 0.96111 0.95853 1.20223 0.99977 0.91248 1.00136 1.18824 1.02608 0.86047 0.97421 0.94021 0.89485 0.92338 0.95990 0.95346 0.92636 0.93385 0.88040 0.83617 0.83847 0.86093 0.86046 0.85814 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.17 37.16 0.34 -2.30 16 2 C 0.13 2.52 2.91 -67.93 -0.20 2.32 16 3 H 0.09 1.56 6.54 -51.93 -0.34 1.22 16 4 C 0.02 0.50 4.43 -27.88 -0.12 0.38 16 5 C -0.53 -13.45 8.36 -34.44 -0.29 -13.74 16 6 H 0.06 1.43 7.12 -52.49 -0.37 1.06 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 9 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.47 -8.96 2.65 -104.11 -0.28 -9.24 16 14 C 0.28 5.06 7.41 -154.82 -1.15 3.91 16 15 C 0.14 2.03 6.98 -4.98 -0.03 2.00 16 16 N -0.84 -11.54 9.58 -11.41 -0.11 -11.65 16 17 N -0.49 -9.70 11.27 -8.23 -0.09 -9.79 16 18 C 0.04 0.74 7.23 -84.70 -0.61 0.13 16 19 C -0.07 -1.20 10.05 -39.61 -0.40 -1.60 16 20 C -0.13 -1.95 9.96 -39.97 -0.40 -2.35 16 21 C -0.12 -1.79 10.03 -39.52 -0.40 -2.18 16 22 C -0.10 -1.74 8.83 -39.50 -0.35 -2.09 16 23 C 0.06 1.22 6.21 -83.99 -0.52 0.70 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.54 6.91 -51.93 -0.36 1.18 16 26 H 0.06 1.03 6.30 -51.93 -0.33 0.70 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.03 0.73 6.46 -51.93 -0.34 0.40 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.05 0.61 6.86 -51.93 -0.36 0.25 16 31 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.35 5.27 9.05 -39.29 -0.36 4.92 16 33 H 0.35 3.60 9.08 -39.29 -0.36 3.24 16 34 H 0.12 1.74 8.06 -52.48 -0.42 1.31 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.13 2.34 6.05 -52.48 -0.32 2.03 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -30.50 305.93 -9.17 -39.67 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.79 Total: 8.85 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -4.22 Total: -13.22 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.26 Total: -55.14 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.50 -9.17 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686518320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.121 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds