Wall clock time and date at job start Mon Mar 30 2020 07:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46582 * 2 1 4 4 C 1.53005 * 109.46874 * 240.00526 * 2 1 3 5 5 C 1.50695 * 109.47093 * 65.71789 * 4 2 1 6 6 H 1.07994 * 120.00341 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99523 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00420 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99742 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47000 * 90.00119 * 9 7 5 11 11 H 1.48498 * 109.46839 * 210.00059 * 9 7 5 12 12 H 1.48498 * 109.47145 * 330.00126 * 9 7 5 13 13 N 1.46499 * 109.47136 * 120.00512 * 2 1 3 14 14 C 1.36042 * 126.34640 * 240.47519 * 13 2 1 15 15 C 1.50699 * 124.94740 * 359.97438 * 14 13 2 16 16 N 1.46893 * 109.47098 * 266.05221 * 15 14 13 17 17 N 1.30106 * 110.09661 * 179.97438 * 14 13 2 18 18 C 1.35786 * 109.64541 * 359.97438 * 17 14 13 19 19 C 1.39739 * 133.60029 * 179.97438 * 18 17 14 20 20 C 1.36601 * 119.88855 * 180.02562 * 19 18 17 21 21 C 1.38774 * 120.66699 * 0.02562 * 20 19 18 22 22 C 1.37857 * 120.44980 * 359.97382 * 21 20 19 23 23 C 1.38050 * 126.34964 * 60.47658 * 13 2 1 24 24 H 1.09004 * 109.47296 * 303.50845 * 1 2 3 25 25 H 1.08996 * 109.46998 * 63.50696 * 1 2 3 26 26 H 1.09000 * 109.47321 * 183.50520 * 1 2 3 27 27 H 1.08999 * 109.46911 * 185.72187 * 4 2 1 28 28 H 1.09003 * 109.46781 * 305.71496 * 4 2 1 29 29 H 0.96999 * 120.00039 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47381 * 26.05846 * 15 14 13 31 31 H 1.09004 * 109.46882 * 146.05510 * 15 14 13 32 32 H 1.00903 * 111.00240 * 61.60733 * 16 15 14 33 33 H 1.00903 * 111.00210 * 185.55141 * 16 15 14 34 34 H 1.08003 * 120.05172 * 359.97438 * 19 18 17 35 35 H 1.07994 * 119.66413 * 179.72273 * 20 19 18 36 36 H 1.07997 * 119.77533 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.15098 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6565 0.0664 -2.4756 6 1 1.1040 0.9887 -2.3741 7 6 2.0112 -0.3908 -3.7272 8 7 2.6836 -1.5142 -3.8508 9 14 1.5365 0.5858 -5.2473 10 1 2.6140 1.5558 -5.5689 11 1 1.3471 -0.3412 -6.3918 12 1 0.2712 1.3190 -4.9894 13 7 2.0184 -0.6907 1.1961 14 6 2.7962 -0.1552 2.1753 15 6 3.2988 1.2654 2.1985 16 7 4.6398 1.3202 1.6015 17 7 3.0430 -1.0482 3.0888 18 6 2.4392 -2.2185 2.7579 19 6 2.3755 -3.4754 3.3653 20 6 1.6692 -4.4830 2.7722 21 6 1.0116 -4.2730 1.5683 22 6 1.0606 -3.0413 0.9511 23 6 1.7745 -2.0057 1.5385 24 1 -0.3634 0.5673 0.8569 25 1 -0.3633 0.4584 -0.9197 26 1 -0.3634 -1.0257 0.0628 27 1 3.1251 -0.8108 -1.1996 28 1 1.5954 -1.7150 -1.3020 29 1 2.9327 -1.8359 -4.7313 30 1 2.6208 1.9000 1.6279 31 1 3.3452 1.6176 3.2290 32 1 4.6189 1.0232 0.6374 33 1 5.0360 2.2442 1.6865 34 1 2.8846 -3.6501 4.3017 35 1 1.6261 -5.4542 3.2425 36 1 0.4570 -5.0797 1.1123 37 1 0.5467 -2.8831 0.0144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686518320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:48 Heat of formation + Delta-G solvation = 40.945976 kcal Electronic energy + Delta-G solvation = -19405.856779 eV Core-core repulsion = 16568.300410 eV Total energy + Delta-G solvation = -2837.556369 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.16126 -38.52287 -37.25094 -35.45810 -34.73012 -32.39922 -30.80009 -30.28332 -29.00090 -26.66755 -25.83273 -23.71172 -22.87647 -22.04455 -20.74819 -18.66285 -18.21795 -17.50709 -17.24701 -16.66235 -16.43852 -15.87304 -15.59594 -15.19312 -15.10244 -14.54792 -14.38854 -14.30170 -13.94262 -13.38121 -13.29310 -12.95273 -12.89227 -12.80963 -12.55730 -12.40171 -12.28830 -12.02607 -11.86165 -11.34133 -11.07047 -10.83831 -10.61317 -9.79702 -9.21000 -8.97629 -8.24658 -6.37455 0.03689 0.65656 1.40837 1.41355 1.51984 1.70103 1.83420 2.38486 2.96342 3.10125 3.16421 3.51416 3.71846 3.72551 4.07835 4.12583 4.18536 4.22112 4.35283 4.41730 4.55234 4.59375 4.63217 4.82572 4.86437 4.96993 5.16021 5.26683 5.33292 5.43169 5.59385 5.61410 5.69301 5.71477 5.93585 6.03485 6.05259 6.30106 6.49302 6.76990 6.96361 7.32849 8.87018 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019228 B = 0.006804 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.854274 B = 4113.939409 C = 4998.061641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.142 3.858 3 H 0.102 0.898 4 C 0.035 3.965 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.257 1.257 13 N -0.475 5.475 14 C 0.269 3.731 15 C 0.146 3.854 16 N -0.847 5.847 17 N -0.512 5.512 18 C 0.010 3.990 19 C -0.082 4.082 20 C -0.121 4.121 21 C -0.107 4.107 22 C -0.123 4.123 23 C 0.034 3.966 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.049 0.951 27 H -0.018 1.018 28 H 0.000 1.000 29 H 0.263 0.737 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.341 0.659 33 H 0.367 0.633 34 H 0.141 0.859 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 2.046 10.511 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.041 3.959 3 H 0.120 0.880 4 C -0.003 4.003 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.789 3.211 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.181 1.181 13 N -0.163 5.163 14 C 0.003 3.997 15 C 0.013 3.987 16 N -0.381 5.381 17 N -0.233 5.233 18 C -0.109 4.109 19 C -0.102 4.102 20 C -0.141 4.141 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.077 4.077 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.000 1.000 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.153 0.847 33 H 0.183 0.817 34 H 0.159 0.841 35 H 0.183 0.817 36 H 0.172 0.828 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.892 1.631 11.556 12.023 hybrid contribution -0.730 0.718 -2.572 2.768 sum -3.622 2.349 8.984 9.967 Atomic orbital electron populations 1.22006 0.92740 1.02310 1.03048 1.21662 0.96089 0.96337 0.81825 0.87984 1.19182 0.94179 0.95481 0.91412 1.21404 1.36192 1.08538 0.90949 0.90692 1.25928 0.94770 0.95885 1.02707 1.70122 1.39692 1.22543 1.24567 0.85446 0.79196 0.78242 0.78170 1.19938 1.21412 1.18128 1.45889 1.41411 1.08945 1.20091 1.24031 0.92558 0.98030 0.85059 1.20247 0.90268 0.84954 1.03185 1.58463 1.21523 1.34163 1.23961 1.70307 1.24935 0.99784 1.28259 1.19593 1.01094 0.95235 0.94948 1.20281 1.00072 0.89252 1.00552 1.20979 0.97692 0.99806 0.95666 1.21257 0.99927 0.95588 0.95851 1.20342 1.01189 0.92531 1.00303 1.19190 1.03650 0.86641 0.98168 0.91574 0.89697 0.93202 0.99997 0.98164 0.92807 0.91594 0.86226 0.84708 0.81681 0.84120 0.81747 0.82776 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.17 71.98 0.66 -4.26 16 2 C 0.14 5.50 2.91 44.99 0.13 5.63 16 3 H 0.10 3.59 6.54 -2.39 -0.02 3.57 16 4 C 0.04 1.74 4.43 29.85 0.13 1.88 16 5 C -0.53 -27.32 8.36 25.60 0.21 -27.11 16 6 H 0.07 3.54 7.12 -2.91 -0.02 3.52 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 9 Si 0.96 41.43 29.54 68.60 2.03 43.46 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 13 N -0.47 -18.51 2.65 -483.30 -1.28 -19.79 16 14 C 0.27 9.84 7.41 137.92 1.02 10.86 16 15 C 0.15 3.93 6.98 85.56 0.60 4.53 16 16 N -0.85 -22.70 9.58 -190.02 -1.82 -24.52 16 17 N -0.51 -20.34 11.27 -179.96 -2.03 -22.37 16 18 C 0.01 0.40 7.23 39.45 0.29 0.68 16 19 C -0.08 -2.59 10.05 22.25 0.22 -2.37 16 20 C -0.12 -3.21 9.96 22.01 0.22 -2.99 16 21 C -0.11 -3.13 10.03 22.31 0.22 -2.91 16 22 C -0.12 -4.57 8.83 22.32 0.20 -4.37 16 23 C 0.03 1.36 6.21 38.86 0.24 1.60 16 24 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 25 H 0.08 2.92 6.91 -2.39 -0.02 2.91 16 26 H 0.05 1.78 6.30 -2.39 -0.02 1.76 16 27 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 28 H 0.00 0.00 6.46 -2.39 -0.02 -0.01 16 29 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.07 1.54 6.86 -2.39 -0.02 1.52 16 31 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 32 H 0.34 10.33 9.05 -89.69 -0.81 9.52 16 33 H 0.37 7.11 9.08 -89.69 -0.81 6.29 16 34 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 35 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 37 H 0.11 4.36 6.05 -2.91 -0.02 4.35 16 Total: -1.00 -67.83 305.93 1.27 -66.56 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -0.52 Total: 28.90 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.61 Total: -18.05 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -4.85 Total: -120.87 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -67.83 1.27 -66.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686518320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.507 kcal (2) G-P(sol) polarization free energy of solvation -67.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds