Wall clock time and date at job start Mon Mar 30 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99709 * 2 1 4 4 H 1.48501 * 109.47090 * 270.00389 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00595 * 3 2 1 6 6 H 1.48503 * 109.46705 * 150.00745 * 3 2 1 7 7 C 1.37872 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46667 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46793 * 180.02562 * 11 10 9 13 13 C 1.36036 * 126.35074 * 269.95962 * 12 11 10 14 14 C 1.50700 * 124.94888 * 0.02562 * 13 12 11 15 15 N 1.46907 * 109.46880 * 90.00101 * 14 13 12 16 16 N 1.30106 * 110.10195 * 180.02562 * 13 12 11 17 17 C 1.35787 * 109.64359 * 359.97438 * 16 13 12 18 18 C 1.39734 * 133.60143 * 179.97438 * 17 16 13 19 19 C 1.36605 * 119.88806 * 180.02562 * 18 17 16 20 20 C 1.38776 * 120.66622 * 359.97438 * 19 18 17 21 21 C 1.37851 * 120.45485 * 0.03810 * 20 19 18 22 22 C 1.38058 * 126.34607 * 90.00139 * 12 11 10 23 23 H 0.96999 * 119.99926 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46734 * 60.00082 * 9 7 2 25 25 H 1.08997 * 109.46845 * 300.00433 * 9 7 2 26 26 H 1.08997 * 109.47199 * 60.00517 * 10 9 7 27 27 H 1.08997 * 109.47809 * 299.99993 * 10 9 7 28 28 H 1.08993 * 109.46988 * 60.00834 * 11 10 9 29 29 H 1.08996 * 109.47382 * 300.00093 * 11 10 9 30 30 H 1.08993 * 109.47363 * 209.99975 * 14 13 12 31 31 H 1.09003 * 109.47256 * 330.00646 * 14 13 12 32 32 H 1.00896 * 110.99678 * 179.97438 * 15 14 13 33 33 H 1.00896 * 110.99931 * 303.95144 * 15 14 13 34 34 H 1.08009 * 120.05649 * 0.29744 * 18 17 16 35 35 H 1.08001 * 119.66343 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.77372 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.15788 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0018 13 6 2.9550 -6.7140 -1.0978 14 6 2.6396 -6.3471 -2.5250 15 7 3.5902 -5.3282 -2.9902 16 7 3.7668 -7.6635 -0.7343 17 6 3.8209 -7.7238 0.6212 18 6 4.5149 -8.5350 1.5228 19 6 4.3575 -8.3483 2.8669 20 6 3.5136 -7.3583 3.3499 21 6 2.8186 -6.5464 2.4792 22 6 2.9649 -6.7224 1.1099 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8726 -3.6047 0.8877 27 1 2.8714 -3.6039 -0.8922 28 1 0.8528 -5.0447 -0.8905 29 1 0.8546 -5.0450 0.8894 30 1 2.7202 -7.2334 -3.1543 31 1 1.6256 -5.9513 -2.5829 32 1 3.3998 -5.0655 -3.9456 33 1 3.5808 -4.5215 -2.3843 34 1 5.1780 -9.3054 1.1576 35 1 4.8954 -8.9776 3.5605 36 1 3.4002 -7.2230 4.4155 37 1 2.1628 -5.7777 2.8604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686530714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:12 Heat of formation + Delta-G solvation = 56.238885 kcal Electronic energy + Delta-G solvation = -18780.529349 eV Core-core repulsion = 15943.636130 eV Total energy + Delta-G solvation = -2836.893219 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.03747 -37.49501 -35.36542 -34.47447 -33.27961 -31.45974 -29.93737 -29.25055 -26.89352 -25.64992 -23.73652 -21.98359 -21.73825 -20.76913 -19.63927 -17.28461 -17.03540 -16.29883 -16.08262 -15.50769 -14.91392 -14.64871 -14.52806 -14.15863 -13.98885 -13.68249 -13.14510 -12.73003 -12.36385 -12.30740 -11.94108 -11.70631 -11.49194 -11.37491 -11.05549 -10.97576 -10.70504 -10.23510 -10.05468 -9.76792 -9.59258 -9.29161 -8.81886 -8.50242 -8.15790 -7.91895 -6.15106 -4.18639 1.06742 1.66513 2.75909 2.90734 3.23485 3.30549 3.34228 4.00208 4.15859 4.34326 4.54851 4.69691 4.88530 5.07511 5.09502 5.14982 5.21594 5.35872 5.47511 5.54835 5.57431 5.66049 5.72221 5.83829 6.12557 6.31664 6.41322 6.60636 6.62074 6.67682 6.72581 6.97115 7.01384 7.29551 7.37471 7.44256 7.52627 7.82011 8.07607 8.22699 8.87329 9.47030 10.95957 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.004983 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.126508 B = 5618.272199 C = 6379.467584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.122 4.122 11 C 0.102 3.898 12 N -0.478 5.478 13 C 0.284 3.716 14 C 0.142 3.858 15 N -0.841 5.841 16 N -0.485 5.485 17 C 0.042 3.958 18 C -0.068 4.068 19 C -0.133 4.133 20 C -0.110 4.110 21 C -0.104 4.104 22 C 0.051 3.949 23 H 0.262 0.738 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.351 0.649 33 H 0.349 0.651 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 -14.001 0.903 14.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.160 4.160 11 C -0.019 4.019 12 N -0.166 5.166 13 C 0.018 3.982 14 C 0.009 3.991 15 N -0.375 5.375 16 N -0.205 5.205 17 C -0.077 4.077 18 C -0.088 4.088 19 C -0.153 4.153 20 C -0.129 4.129 21 C -0.124 4.124 22 C -0.059 4.059 23 H 0.072 0.928 24 H 0.036 0.964 25 H 0.038 0.962 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.255 -14.852 0.475 15.456 hybrid contribution -0.933 2.232 0.471 2.465 sum 3.322 -12.620 0.945 13.084 Atomic orbital electron populations 1.69948 1.06082 1.26884 1.50387 1.25002 0.94854 0.99358 0.94992 0.86571 0.79895 0.83222 0.78236 1.20538 1.21104 1.19791 1.21150 0.93064 0.90710 1.51300 0.92580 1.19045 0.93651 0.90949 0.97532 1.22093 0.99724 0.92708 1.01523 1.22249 0.90673 0.84904 1.04104 1.45631 1.37389 1.28828 1.04743 1.23344 0.93201 0.91163 0.90473 1.20140 0.94109 0.97666 0.87143 1.58659 1.54432 1.16603 1.07781 1.70374 1.19367 1.20193 1.10608 1.19103 1.00179 0.98080 0.90327 1.19945 0.98800 0.98453 0.91570 1.20574 1.00516 0.99539 0.94719 1.20829 0.97247 0.95767 0.99107 1.20047 1.02132 1.01242 0.89009 1.18922 0.99984 0.97448 0.89563 0.92826 0.96379 0.96240 0.92369 0.92797 0.89396 0.89301 0.87728 0.93179 0.83485 0.83601 0.85753 0.85730 0.85542 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.06 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.30 5.48 -26.73 -0.15 -2.45 16 11 C 0.10 1.59 5.93 -4.04 -0.02 1.57 16 12 N -0.48 -7.72 2.81 -111.15 -0.31 -8.04 16 13 C 0.28 4.56 7.37 -154.83 -1.14 3.42 16 14 C 0.14 1.80 7.07 -4.97 -0.04 1.77 16 15 N -0.84 -10.82 9.61 -11.41 -0.11 -10.93 16 16 N -0.49 -8.57 11.27 -8.24 -0.09 -8.66 16 17 C 0.04 0.72 7.23 -84.70 -0.61 0.11 16 18 C -0.07 -0.95 10.05 -39.61 -0.40 -1.35 16 19 C -0.13 -1.58 9.96 -39.97 -0.40 -1.98 16 20 C -0.11 -1.34 10.03 -39.52 -0.40 -1.74 16 21 C -0.10 -1.50 10.05 -39.50 -0.40 -1.90 16 22 C 0.05 0.85 6.88 -83.98 -0.58 0.27 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 1.00 6.22 -51.93 -0.32 0.68 16 28 H 0.09 1.25 7.00 -51.93 -0.36 0.88 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.56 7.01 -51.93 -0.36 0.20 16 32 H 0.35 3.55 9.08 -39.29 -0.36 3.19 16 33 H 0.35 4.97 7.06 -39.29 -0.28 4.69 16 34 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -31.22 312.78 -9.79 -41.01 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.03 Total: 5.52 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -4.68 Total: -14.65 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.22 Total: -52.54 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.22 -9.79 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686530714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.245 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds