Wall clock time and date at job start Mon Mar 30 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99709 * 2 1 4 4 H 1.48501 * 109.47090 * 270.00389 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00595 * 3 2 1 6 6 H 1.48503 * 109.46705 * 150.00745 * 3 2 1 7 7 C 1.37872 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46667 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46793 * 180.02562 * 11 10 9 13 13 C 1.36036 * 126.35074 * 269.95962 * 12 11 10 14 14 C 1.50700 * 124.94888 * 0.02562 * 13 12 11 15 15 N 1.46907 * 109.46880 * 90.00101 * 14 13 12 16 16 N 1.30106 * 110.10195 * 180.02562 * 13 12 11 17 17 C 1.35787 * 109.64359 * 359.97438 * 16 13 12 18 18 C 1.39734 * 133.60143 * 179.97438 * 17 16 13 19 19 C 1.36605 * 119.88806 * 180.02562 * 18 17 16 20 20 C 1.38776 * 120.66622 * 359.97438 * 19 18 17 21 21 C 1.37851 * 120.45485 * 0.03810 * 20 19 18 22 22 C 1.38058 * 126.34607 * 90.00139 * 12 11 10 23 23 H 0.96999 * 119.99926 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46734 * 60.00082 * 9 7 2 25 25 H 1.08997 * 109.46845 * 300.00433 * 9 7 2 26 26 H 1.08997 * 109.47199 * 60.00517 * 10 9 7 27 27 H 1.08997 * 109.47809 * 299.99993 * 10 9 7 28 28 H 1.08993 * 109.46988 * 60.00834 * 11 10 9 29 29 H 1.08996 * 109.47382 * 300.00093 * 11 10 9 30 30 H 1.08993 * 109.47363 * 209.99975 * 14 13 12 31 31 H 1.09003 * 109.47256 * 330.00646 * 14 13 12 32 32 H 1.00896 * 110.99678 * 179.97438 * 15 14 13 33 33 H 1.00896 * 110.99931 * 303.95144 * 15 14 13 34 34 H 1.08009 * 120.05649 * 0.29744 * 18 17 16 35 35 H 1.08001 * 119.66343 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.77372 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.15788 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0018 13 6 2.9550 -6.7140 -1.0978 14 6 2.6396 -6.3471 -2.5250 15 7 3.5902 -5.3282 -2.9902 16 7 3.7668 -7.6635 -0.7343 17 6 3.8209 -7.7238 0.6212 18 6 4.5149 -8.5350 1.5228 19 6 4.3575 -8.3483 2.8669 20 6 3.5136 -7.3583 3.3499 21 6 2.8186 -6.5464 2.4792 22 6 2.9649 -6.7224 1.1099 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8726 -3.6047 0.8877 27 1 2.8714 -3.6039 -0.8922 28 1 0.8528 -5.0447 -0.8905 29 1 0.8546 -5.0450 0.8894 30 1 2.7202 -7.2334 -3.1543 31 1 1.6256 -5.9513 -2.5829 32 1 3.3998 -5.0655 -3.9456 33 1 3.5808 -4.5215 -2.3843 34 1 5.1780 -9.3054 1.1576 35 1 4.8954 -8.9776 3.5605 36 1 3.4002 -7.2230 4.4155 37 1 2.1628 -5.7777 2.8604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686530714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:11 Heat of formation + Delta-G solvation = 37.022321 kcal Electronic energy + Delta-G solvation = -18781.362642 eV Core-core repulsion = 15943.636130 eV Total energy + Delta-G solvation = -2837.726512 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.18850 -38.56159 -36.84989 -35.48542 -35.04803 -33.04925 -31.15578 -30.32618 -28.56859 -26.68140 -25.44470 -23.11303 -22.82912 -22.44006 -20.83497 -18.68196 -18.33935 -17.83374 -17.20002 -16.70041 -16.50280 -16.08897 -15.79606 -15.27557 -15.12400 -14.83926 -14.49078 -14.15330 -14.05768 -13.41491 -13.32907 -13.00165 -12.83502 -12.75174 -12.63160 -12.42053 -12.33899 -11.76804 -11.68820 -11.43887 -11.10699 -10.93753 -10.58991 -9.80829 -9.27594 -9.04426 -8.24276 -6.34590 -0.01451 0.58911 1.38786 1.39765 1.50058 1.58657 1.75046 2.38394 2.92220 3.10009 3.10197 3.43540 3.62673 3.69224 4.01220 4.07298 4.13206 4.18206 4.30419 4.41828 4.49812 4.51800 4.57224 4.76362 4.80266 4.93144 5.01198 5.23798 5.43105 5.50807 5.58119 5.58833 5.63731 5.76604 5.94938 6.00930 6.11798 6.21567 6.43943 6.80287 6.89593 7.35140 8.86795 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.004983 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.126508 B = 5618.272199 C = 6379.467584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.032 3.968 10 C -0.103 4.103 11 C 0.113 3.887 12 N -0.482 5.482 13 C 0.275 3.725 14 C 0.142 3.858 15 N -0.848 5.848 16 N -0.512 5.512 17 C 0.011 3.989 18 C -0.082 4.082 19 C -0.122 4.122 20 C -0.100 4.100 21 C -0.124 4.124 22 C 0.026 3.974 23 H 0.265 0.735 24 H 0.006 0.994 25 H 0.000 1.000 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.365 0.635 33 H 0.340 0.660 34 H 0.138 0.862 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.339 -14.470 1.604 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.005 4.005 10 C -0.142 4.142 11 C -0.008 4.008 12 N -0.171 5.171 13 C 0.009 3.991 14 C 0.010 3.990 15 N -0.383 5.383 16 N -0.233 5.233 17 C -0.107 4.107 18 C -0.102 4.102 19 C -0.142 4.142 20 C -0.119 4.119 21 C -0.145 4.145 22 C -0.083 4.083 23 H 0.073 0.927 24 H 0.025 0.975 25 H 0.018 0.982 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.084 0.916 32 H 0.182 0.818 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.089 -15.341 1.168 16.205 hybrid contribution -1.152 2.307 0.326 2.599 sum 3.937 -13.034 1.494 13.697 Atomic orbital electron populations 1.70053 1.07501 1.27836 1.51364 1.25822 0.95671 1.02882 0.94641 0.85561 0.78642 0.79009 0.78550 1.19679 1.20718 1.19304 1.21572 0.93295 0.92320 1.50945 0.92773 1.18888 0.93931 0.91839 0.95878 1.21775 0.98548 0.92883 1.00964 1.22037 0.90232 0.83333 1.05244 1.45584 1.37664 1.28826 1.04986 1.23899 0.92792 0.90854 0.91513 1.20284 0.94790 0.98195 0.85708 1.58641 1.54870 1.16192 1.08554 1.70338 1.20357 1.21240 1.11381 1.19582 1.01361 0.99277 0.90510 1.20303 0.98977 0.98621 0.92275 1.21029 0.99572 0.99146 0.94418 1.21298 0.95638 0.94473 1.00489 1.20321 1.03240 1.02330 0.88632 1.19309 1.00623 0.97972 0.90424 0.92664 0.97548 0.98201 0.93788 0.92453 0.87683 0.88830 0.86441 0.91558 0.81839 0.84627 0.84437 0.81924 0.82233 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.60 13.29 21.45 0.28 -53.31 16 2 C 0.01 0.46 5.46 84.65 0.46 0.93 16 3 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -29.36 9.11 25.60 0.23 -29.13 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.10 -3.92 5.48 30.59 0.17 -3.75 16 11 C 0.11 3.51 5.93 86.38 0.51 4.02 16 12 N -0.48 -15.52 2.81 -505.58 -1.42 -16.94 16 13 C 0.28 8.78 7.37 137.92 1.02 9.80 16 14 C 0.14 3.50 7.07 85.56 0.61 4.10 16 15 N -0.85 -21.24 9.61 -190.00 -1.83 -23.07 16 16 N -0.51 -18.14 11.27 -179.97 -2.03 -20.17 16 17 C 0.01 0.37 7.23 39.45 0.29 0.66 16 18 C -0.08 -2.19 10.05 22.25 0.22 -1.97 16 19 C -0.12 -2.54 9.96 22.02 0.22 -2.32 16 20 C -0.10 -2.17 10.03 22.31 0.22 -1.95 16 21 C -0.12 -3.49 10.05 22.32 0.22 -3.26 16 22 C 0.03 0.86 6.88 38.86 0.27 1.13 16 23 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 24 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 2.13 6.22 -2.39 -0.01 2.11 16 28 H 0.11 2.89 7.00 -2.39 -0.02 2.87 16 29 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.07 1.40 7.01 -2.39 -0.02 1.39 16 32 H 0.37 7.02 9.08 -89.70 -0.81 6.21 16 33 H 0.34 9.58 7.06 -89.70 -0.63 8.95 16 34 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 35 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 37 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -67.35 312.78 1.27 -66.08 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -0.36 Total: 22.60 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 4.59 Total: -20.04 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -4.99 Total: -113.49 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -67.35 1.27 -66.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686530714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.105 kcal (2) G-P(sol) polarization free energy of solvation -67.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds