Wall clock time and date at job start Mon Mar 30 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 115.55313 * 2 1 4 4 N 1.46496 * 109.47134 * 325.58854 * 3 2 1 5 5 C 1.36942 * 120.00092 * 92.39585 * 4 3 2 6 6 H 1.08002 * 119.99556 * 216.26535 * 5 4 3 7 7 C 1.38807 * 120.00028 * 36.26835 * 5 4 3 8 8 N 1.31615 * 119.99790 * 212.36560 * 7 5 4 9 9 Si 1.86802 * 120.00221 * 32.36055 * 7 5 4 10 10 H 1.48493 * 109.47205 * 94.28633 * 9 7 5 11 11 H 1.48503 * 109.46897 * 334.28981 * 9 7 5 12 12 H 1.48503 * 109.47283 * 214.29068 * 9 7 5 13 13 C 1.46493 * 119.99961 * 272.39422 * 4 3 2 14 14 C 1.54267 * 110.03671 * 237.70593 * 13 4 3 15 15 C 1.54883 * 104.20012 * 217.10301 * 14 13 4 16 16 C 1.54892 * 102.74556 * 37.94413 * 15 14 13 17 17 C 1.53879 * 110.03229 * 120.53900 * 13 4 3 18 18 C 1.53009 * 117.49709 * 214.33522 * 2 1 3 19 19 C 1.53007 * 117.49853 * 145.67651 * 2 1 3 20 20 F 1.39897 * 117.49709 * 215.00052 * 19 2 1 21 21 F 1.39903 * 117.49658 * 359.97438 * 19 2 1 22 22 H 1.09004 * 109.47033 * 34.41061 * 1 2 3 23 23 H 1.09000 * 109.47370 * 154.41265 * 1 2 3 24 24 H 1.09006 * 109.46735 * 274.41408 * 1 2 3 25 25 H 1.09001 * 109.47310 * 205.58543 * 3 2 1 26 26 H 1.09006 * 109.47078 * 85.58331 * 3 2 1 27 27 H 0.97001 * 119.99849 * 180.02562 * 8 7 5 28 28 H 1.09000 * 110.01667 * 359.14958 * 13 4 3 29 29 H 1.09003 * 110.48212 * 335.78843 * 14 13 4 30 30 H 1.09005 * 110.48595 * 98.42461 * 14 13 4 31 31 H 1.09000 * 110.76352 * 279.63101 * 15 14 13 32 32 H 1.08999 * 110.91875 * 156.32695 * 15 14 13 33 33 H 1.09003 * 110.48729 * 203.37980 * 16 15 14 34 34 H 1.08999 * 110.60052 * 80.78955 * 16 15 14 35 35 H 1.09004 * 110.03492 * 238.56926 * 17 13 4 36 36 H 1.08996 * 110.03162 * 0.02562 * 17 13 4 37 37 H 1.08995 * 117.49569 * 359.97438 * 18 2 1 38 38 H 1.09000 * 117.49870 * 144.99893 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.3725 2.3124 -0.7805 5 6 0.4188 3.0732 -0.1585 6 1 -0.5136 3.2863 -0.6601 7 6 0.6506 3.5704 1.1166 8 7 -0.3515 3.7204 1.9565 9 14 2.3847 4.0265 1.6404 10 1 2.6087 5.4751 1.4029 11 1 3.3640 3.2381 0.8500 12 1 2.5600 3.7287 3.0847 13 6 1.5754 2.4306 -2.2265 14 6 1.9154 3.8895 -2.5950 15 6 1.1981 4.1166 -3.9488 16 6 -0.1293 3.3392 -3.7667 17 6 0.2753 2.0807 -2.9716 18 6 2.2364 -1.1207 -0.7655 19 6 2.2364 -1.1209 0.7653 20 9 3.4363 -0.8051 1.4115 21 9 1.4339 -2.0670 1.4119 22 1 -0.3633 0.8479 -0.5808 23 1 -0.3634 -0.9269 -0.4438 24 1 -0.3633 0.0791 1.0247 25 1 3.1829 1.3083 -0.4438 26 1 2.2753 1.7423 1.0247 27 1 -0.1896 4.0683 2.8475 28 1 2.3790 1.7671 -2.5460 29 1 1.5296 4.5737 -1.8392 30 1 2.9925 4.0133 -2.7086 31 1 1.7808 3.6988 -4.7698 32 1 1.0053 5.1766 -4.1141 33 1 -0.5445 3.0612 -4.7355 34 1 -0.8472 3.9333 -3.2012 35 1 0.4482 1.2479 -3.6533 36 1 -0.5067 1.8233 -2.2573 37 1 1.6111 -1.8582 -1.2687 38 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689340587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:40 Heat of formation + Delta-G solvation = -52.620448 kcal Electronic energy + Delta-G solvation = -21037.659857 eV Core-core repulsion = 17745.356956 eV Total energy + Delta-G solvation = -3292.302900 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.18554 -46.86953 -38.34763 -36.69432 -33.86210 -31.41465 -28.14464 -27.83698 -27.12812 -25.97694 -22.64502 -22.08234 -20.01640 -19.33376 -19.02995 -17.37116 -16.31470 -15.92018 -15.56023 -15.36113 -14.99680 -14.25082 -13.60766 -13.57556 -13.48576 -13.14170 -13.04674 -12.89349 -12.64769 -12.30888 -12.14595 -11.66261 -11.46104 -10.96120 -10.80909 -10.63545 -10.53320 -10.47338 -10.38019 -10.32600 -10.00448 -9.85588 -9.65678 -9.39968 -9.07563 -8.45096 -6.86556 -6.10093 -3.39437 3.34597 3.46394 3.48433 3.52248 3.66906 4.52135 4.66073 4.79533 4.98528 5.18503 5.20581 5.33266 5.37908 5.58992 5.64452 5.81315 6.01144 6.06833 6.10763 6.16791 6.21237 6.31843 6.35224 6.40516 6.48787 6.50966 6.58812 6.66641 6.70768 6.72903 6.88698 7.02341 7.15424 7.35968 7.99049 8.36605 8.96363 9.69342 10.10595 11.05035 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.009909 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.909742 B = 2824.988932 C = 3652.672901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C 0.181 3.819 4 N -0.588 5.588 5 C -0.271 4.271 6 H 0.082 0.918 7 C 0.049 3.951 8 N -0.878 5.878 9 Si 0.841 3.159 10 H -0.290 1.290 11 H -0.261 1.261 12 H -0.295 1.295 13 C 0.172 3.828 14 C -0.136 4.136 15 C -0.122 4.122 16 C -0.118 4.118 17 C -0.134 4.134 18 C -0.179 4.179 19 C 0.174 3.826 20 F -0.169 7.169 21 F -0.168 7.168 22 H 0.106 0.894 23 H 0.036 0.964 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.263 0.737 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 -5.859 -8.486 10.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.113 4.113 3 C 0.054 3.946 4 N -0.307 5.307 5 C -0.398 4.398 6 H 0.099 0.901 7 C -0.153 4.153 8 N -0.516 5.516 9 Si 0.668 3.332 10 H -0.218 1.218 11 H -0.186 1.186 12 H -0.221 1.221 13 C 0.065 3.935 14 C -0.175 4.175 15 C -0.160 4.160 16 C -0.156 4.156 17 C -0.173 4.173 18 C -0.217 4.217 19 C 0.137 3.863 20 F -0.149 7.149 21 F -0.149 7.149 22 H 0.125 0.875 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.753 -5.809 -8.260 10.773 hybrid contribution 1.175 0.102 0.756 1.401 sum 4.928 -5.706 -7.504 10.637 Atomic orbital electron populations 1.21334 0.89436 1.02188 1.03460 1.24094 0.98566 0.93399 0.95277 1.20847 0.91699 0.84933 0.97159 1.44195 1.42365 1.41894 1.02280 1.18472 0.94927 1.27547 0.98866 0.90070 1.25408 0.95878 0.97658 0.96353 1.70019 1.31738 1.44340 1.05531 0.87502 0.89073 0.79188 0.77427 1.21797 1.18554 1.22146 1.21071 0.94257 0.93933 0.84197 1.22815 0.98316 0.99857 0.96545 1.22401 0.96797 0.99155 0.97622 1.22257 0.97241 0.97382 0.98690 1.22610 1.00123 0.96141 0.98409 1.24524 1.04167 1.02609 0.90379 1.20516 0.81533 0.96070 0.88163 1.92961 1.45390 1.92867 1.83716 1.92956 1.72480 1.65761 1.83697 0.87517 0.94471 0.91989 0.93634 0.91558 0.92703 0.93075 0.89651 0.93539 0.92783 0.92691 0.93332 0.91693 0.93632 0.90412 0.87051 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 9.06 37.16 0.34 -1.69 16 2 C -0.11 -2.00 2.57 -154.50 -0.40 -2.40 16 3 C 0.18 3.72 3.71 -4.04 -0.02 3.70 16 4 N -0.59 -12.33 1.24 -164.39 -0.20 -12.54 16 5 C -0.27 -6.66 6.23 -15.06 -0.09 -6.75 16 6 H 0.08 2.17 7.38 -52.49 -0.39 1.78 16 7 C 0.05 1.32 5.07 -17.43 -0.09 1.23 16 8 N -0.88 -25.11 13.97 55.49 0.78 -24.33 16 9 Si 0.84 20.75 26.25 -169.99 -4.46 16.29 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.26 -6.13 5.71 56.52 0.32 -5.81 16 12 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 13 C 0.17 3.09 3.42 -66.81 -0.23 2.86 16 14 C -0.14 -2.39 6.41 -25.08 -0.16 -2.55 16 15 C -0.12 -1.80 6.91 -24.74 -0.17 -1.97 16 16 C -0.12 -1.80 6.83 -25.07 -0.17 -1.97 16 17 C -0.13 -2.20 6.13 -25.61 -0.16 -2.35 16 18 C -0.18 -2.64 9.80 -26.68 -0.26 -2.90 16 19 C 0.17 3.11 5.14 -26.69 -0.14 2.97 16 20 F -0.17 -3.17 17.14 2.25 0.04 -3.13 16 21 F -0.17 -3.08 17.15 2.25 0.04 -3.04 16 22 H 0.11 2.18 4.07 -51.93 -0.21 1.97 16 23 H 0.04 0.60 7.90 -51.93 -0.41 0.19 16 24 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 25 H 0.05 0.87 7.74 -51.93 -0.40 0.47 16 26 H 0.07 1.54 4.24 -51.93 -0.22 1.32 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.05 0.85 7.86 -51.93 -0.41 0.45 16 29 H 0.08 1.75 7.03 -51.93 -0.36 1.39 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.44 5.43 -51.93 -0.28 1.16 16 37 H 0.11 1.43 8.05 -51.93 -0.42 1.01 16 38 H 0.11 1.47 8.05 -51.93 -0.42 1.05 16 LS Contribution 299.99 15.07 4.52 4.52 Total: -1.00 -26.68 299.99 -6.53 -33.22 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.69 Total: 0.84 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.54 Total: -11.82 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.57 Total: -36.87 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.08 Total: -6.18 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.46 Total: 16.29 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.68 -6.53 -33.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689340587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.403 kcal (2) G-P(sol) polarization free energy of solvation -26.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds