Wall clock time and date at job start Mon Mar 30 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 115.55313 * 2 1 4 4 N 1.46496 * 109.47134 * 325.58854 * 3 2 1 5 5 C 1.36942 * 120.00092 * 92.39585 * 4 3 2 6 6 H 1.08002 * 119.99556 * 216.26535 * 5 4 3 7 7 C 1.38807 * 120.00028 * 36.26835 * 5 4 3 8 8 N 1.31615 * 119.99790 * 212.36560 * 7 5 4 9 9 Si 1.86802 * 120.00221 * 32.36055 * 7 5 4 10 10 H 1.48493 * 109.47205 * 94.28633 * 9 7 5 11 11 H 1.48503 * 109.46897 * 334.28981 * 9 7 5 12 12 H 1.48503 * 109.47283 * 214.29068 * 9 7 5 13 13 C 1.46493 * 119.99961 * 272.39422 * 4 3 2 14 14 C 1.54267 * 110.03671 * 237.70593 * 13 4 3 15 15 C 1.54883 * 104.20012 * 217.10301 * 14 13 4 16 16 C 1.54892 * 102.74556 * 37.94413 * 15 14 13 17 17 C 1.53879 * 110.03229 * 120.53900 * 13 4 3 18 18 C 1.53009 * 117.49709 * 214.33522 * 2 1 3 19 19 C 1.53007 * 117.49853 * 145.67651 * 2 1 3 20 20 F 1.39897 * 117.49709 * 215.00052 * 19 2 1 21 21 F 1.39903 * 117.49658 * 359.97438 * 19 2 1 22 22 H 1.09004 * 109.47033 * 34.41061 * 1 2 3 23 23 H 1.09000 * 109.47370 * 154.41265 * 1 2 3 24 24 H 1.09006 * 109.46735 * 274.41408 * 1 2 3 25 25 H 1.09001 * 109.47310 * 205.58543 * 3 2 1 26 26 H 1.09006 * 109.47078 * 85.58331 * 3 2 1 27 27 H 0.97001 * 119.99849 * 180.02562 * 8 7 5 28 28 H 1.09000 * 110.01667 * 359.14958 * 13 4 3 29 29 H 1.09003 * 110.48212 * 335.78843 * 14 13 4 30 30 H 1.09005 * 110.48595 * 98.42461 * 14 13 4 31 31 H 1.09000 * 110.76352 * 279.63101 * 15 14 13 32 32 H 1.08999 * 110.91875 * 156.32695 * 15 14 13 33 33 H 1.09003 * 110.48729 * 203.37980 * 16 15 14 34 34 H 1.08999 * 110.60052 * 80.78955 * 16 15 14 35 35 H 1.09004 * 110.03492 * 238.56926 * 17 13 4 36 36 H 1.08996 * 110.03162 * 0.02562 * 17 13 4 37 37 H 1.08995 * 117.49569 * 359.97438 * 18 2 1 38 38 H 1.09000 * 117.49870 * 144.99893 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.3725 2.3124 -0.7805 5 6 0.4188 3.0732 -0.1585 6 1 -0.5136 3.2863 -0.6601 7 6 0.6506 3.5704 1.1166 8 7 -0.3515 3.7204 1.9565 9 14 2.3847 4.0265 1.6404 10 1 2.6087 5.4751 1.4029 11 1 3.3640 3.2381 0.8500 12 1 2.5600 3.7287 3.0847 13 6 1.5754 2.4306 -2.2265 14 6 1.9154 3.8895 -2.5950 15 6 1.1981 4.1166 -3.9488 16 6 -0.1293 3.3392 -3.7667 17 6 0.2753 2.0807 -2.9716 18 6 2.2364 -1.1207 -0.7655 19 6 2.2364 -1.1209 0.7653 20 9 3.4363 -0.8051 1.4115 21 9 1.4339 -2.0670 1.4119 22 1 -0.3633 0.8479 -0.5808 23 1 -0.3634 -0.9269 -0.4438 24 1 -0.3633 0.0791 1.0247 25 1 3.1829 1.3083 -0.4438 26 1 2.2753 1.7423 1.0247 27 1 -0.1896 4.0683 2.8475 28 1 2.3790 1.7671 -2.5460 29 1 1.5296 4.5737 -1.8392 30 1 2.9925 4.0133 -2.7086 31 1 1.7808 3.6988 -4.7698 32 1 1.0053 5.1766 -4.1141 33 1 -0.5445 3.0612 -4.7355 34 1 -0.8472 3.9333 -3.2012 35 1 0.4482 1.2479 -3.6533 36 1 -0.5067 1.8233 -2.2573 37 1 1.6111 -1.8582 -1.2687 38 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689340587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:40 Heat of formation + Delta-G solvation = -65.639941 kcal Electronic energy + Delta-G solvation = -21038.224424 eV Core-core repulsion = 17745.356956 eV Total energy + Delta-G solvation = -3292.867468 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.58550 -48.28192 -39.84291 -38.05126 -35.52270 -33.30939 -29.52640 -29.18681 -28.59801 -27.79115 -24.30293 -23.42701 -21.27026 -20.79681 -20.61902 -18.84538 -18.00164 -17.50429 -17.03146 -16.83423 -16.57026 -15.86470 -15.03794 -14.99510 -14.92427 -14.65948 -14.58501 -14.45793 -14.10210 -13.94989 -13.73537 -13.12051 -13.04568 -12.73731 -12.45029 -12.22646 -12.18014 -11.92375 -11.70623 -11.66659 -11.51369 -11.26773 -11.17524 -11.02637 -10.49579 -10.46362 -8.65111 -8.17823 -5.39662 1.33817 1.45023 1.48672 2.14401 2.26974 2.49139 3.04137 3.32627 3.48387 3.60156 3.78566 4.02906 4.07206 4.19287 4.33664 4.58047 4.64631 4.74853 4.76854 4.83519 4.90941 4.97303 5.01116 5.03355 5.07546 5.09172 5.14505 5.24694 5.27201 5.38715 5.56077 5.61288 5.74437 5.84939 6.02482 6.34043 7.09487 7.76707 8.18506 9.02045 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.009909 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.909742 B = 2824.988932 C = 3652.672901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.134 4.134 3 C 0.178 3.822 4 N -0.593 5.593 5 C -0.224 4.224 6 H 0.053 0.947 7 C -0.005 4.005 8 N -0.929 5.929 9 Si 0.887 3.113 10 H -0.301 1.301 11 H -0.239 1.239 12 H -0.312 1.312 13 C 0.165 3.835 14 C -0.140 4.140 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.128 4.128 18 C -0.128 4.128 19 C 0.155 3.845 20 F -0.178 7.178 21 F -0.175 7.175 22 H 0.086 0.914 23 H 0.065 0.935 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.257 0.743 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.141 0.859 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.656 -7.658 -11.750 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.051 3.949 4 N -0.313 5.313 5 C -0.353 4.353 6 H 0.071 0.929 7 C -0.202 4.202 8 N -0.573 5.573 9 Si 0.716 3.284 10 H -0.229 1.229 11 H -0.162 1.162 12 H -0.240 1.240 13 C 0.060 3.940 14 C -0.179 4.179 15 C -0.149 4.149 16 C -0.155 4.155 17 C -0.167 4.167 18 C -0.165 4.165 19 C 0.118 3.882 20 F -0.158 7.158 21 F -0.156 7.156 22 H 0.105 0.895 23 H 0.084 0.916 24 H 0.046 0.954 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.159 0.841 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.625 -7.627 -11.568 14.955 hybrid contribution 0.563 0.613 1.689 1.883 sum 6.188 -7.014 -9.879 13.605 Atomic orbital electron populations 1.21169 0.90413 1.02772 1.01144 1.23833 0.97893 0.93302 0.98786 1.20780 0.92797 0.85927 0.95363 1.44259 1.41645 1.41718 1.03722 1.18263 0.94323 1.24984 0.97741 0.92949 1.25814 0.97781 0.99486 0.97129 1.70115 1.33289 1.47938 1.05912 0.86747 0.86956 0.78409 0.76298 1.22903 1.16213 1.24033 1.21357 0.95958 0.94820 0.81901 1.22791 0.99320 0.98585 0.97193 1.22368 0.96164 0.99693 0.96717 1.22247 0.97221 0.96620 0.99444 1.22528 0.98317 0.97613 0.98254 1.24665 1.04594 0.99594 0.87688 1.20823 0.81160 0.95892 0.90310 1.92941 1.45687 1.93009 1.84204 1.92941 1.72760 1.65738 1.84144 0.89529 0.91636 0.95386 0.91388 0.95034 0.93428 0.90312 0.93624 0.92212 0.89878 0.92254 0.90624 0.94330 0.90698 0.93228 0.84121 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.64 9.06 71.98 0.65 -2.99 16 2 C -0.13 -4.62 2.57 -52.18 -0.13 -4.76 16 3 C 0.18 7.00 3.71 86.38 0.32 7.32 16 4 N -0.59 -24.29 1.24 -674.02 -0.84 -25.13 16 5 C -0.22 -11.30 6.23 84.03 0.52 -10.78 16 6 H 0.05 2.94 7.38 -2.91 -0.02 2.92 16 7 C 0.00 -0.27 5.07 84.86 0.43 0.16 16 8 N -0.93 -56.20 13.97 21.65 0.30 -55.90 16 9 Si 0.89 44.29 26.25 68.60 1.80 46.09 16 10 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 11 H -0.24 -10.86 5.71 99.48 0.57 -10.29 16 12 H -0.31 -16.34 7.11 99.48 0.71 -15.64 16 13 C 0.17 5.43 3.42 45.72 0.16 5.59 16 14 C -0.14 -4.58 6.41 31.67 0.20 -4.38 16 15 C -0.11 -2.92 6.91 31.88 0.22 -2.70 16 16 C -0.12 -3.30 6.83 31.67 0.22 -3.08 16 17 C -0.13 -3.85 6.13 31.32 0.19 -3.66 16 18 C -0.13 -3.12 9.80 30.62 0.30 -2.82 16 19 C 0.16 5.15 5.14 30.62 0.16 5.31 16 20 F -0.18 -6.34 17.14 44.97 0.77 -5.57 16 21 F -0.18 -6.13 17.15 44.97 0.77 -5.36 16 22 H 0.09 3.56 4.07 -2.38 -0.01 3.55 16 23 H 0.06 2.00 7.90 -2.39 -0.02 1.98 16 24 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.07 2.35 7.74 -2.39 -0.02 2.33 16 26 H 0.03 1.46 4.24 -2.38 -0.01 1.45 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.08 2.21 7.86 -2.39 -0.02 2.19 16 29 H 0.04 1.86 7.03 -2.39 -0.02 1.84 16 30 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.79 5.43 -2.39 -0.01 1.78 16 37 H 0.14 2.70 8.05 -2.39 -0.02 2.68 16 38 H 0.14 2.72 8.05 -2.39 -0.02 2.70 16 Total: -1.00 -61.41 299.99 6.96 -54.46 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.91 Total: 8.19 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 3.24 Total: -16.79 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -0.53 Total: -81.03 kcal Atomic # 9 Polarization: -12.47 SS G_CDS: 1.54 Total: -10.93 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.80 Total: 46.09 kcal Total: -61.41 6.96 -54.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689340587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.184 kcal (2) G-P(sol) polarization free energy of solvation -61.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds