Wall clock time and date at job start Mon Mar 30 2020 06:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 115.54488 * 2 1 4 4 N 1.46898 * 109.47079 * 54.11837 * 3 2 1 5 5 C 1.46851 * 111.00087 * 52.17753 * 4 3 2 6 6 C 1.53035 * 109.52332 * 185.83594 * 5 4 3 7 7 C 1.53114 * 109.27943 * 300.82176 * 6 5 4 8 8 C 1.53111 * 109.16292 * 57.65392 * 7 6 5 9 9 H 1.09001 * 109.50729 * 62.28774 * 8 7 6 10 10 C 1.50709 * 109.53931 * 182.38522 * 8 7 6 11 11 H 1.07999 * 119.99714 * 119.81844 * 10 8 7 12 12 C 1.37877 * 119.99870 * 299.82412 * 10 8 7 13 13 N 1.31512 * 119.99963 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00035 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.46997 * 60.00114 * 14 12 10 16 16 H 1.48499 * 109.47040 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46928 * 300.00135 * 14 12 10 18 18 C 1.46849 * 110.99995 * 176.38467 * 4 3 2 19 19 C 1.52999 * 117.49958 * 214.29204 * 2 1 3 20 20 C 1.52996 * 117.49961 * 145.66960 * 2 1 3 21 21 F 1.39906 * 117.49647 * 214.98025 * 20 2 1 22 22 F 1.39897 * 117.49939 * 359.97438 * 20 2 1 23 23 H 1.09000 * 109.46947 * 269.38831 * 1 2 3 24 24 H 1.09002 * 109.46745 * 149.39930 * 1 2 3 25 25 H 1.08997 * 109.47338 * 29.39703 * 1 2 3 26 26 H 1.09001 * 109.46774 * 174.12024 * 3 2 1 27 27 H 1.09003 * 109.47183 * 294.11764 * 3 2 1 28 28 H 1.08996 * 109.45666 * 305.85249 * 5 4 3 29 29 H 1.09001 * 109.46137 * 65.82156 * 5 4 3 30 30 H 1.08993 * 109.50297 * 180.87676 * 6 5 4 31 31 H 1.09000 * 109.50270 * 60.76334 * 6 5 4 32 32 H 1.08997 * 109.52053 * 297.74689 * 7 6 5 33 33 H 1.09001 * 109.52607 * 177.56043 * 7 6 5 34 34 H 0.97003 * 120.00584 * 179.97438 * 13 12 10 35 35 H 1.09005 * 109.46288 * 294.17694 * 18 4 3 36 36 H 1.09002 * 109.45997 * 54.15467 * 18 4 3 37 37 H 1.09002 * 117.50062 * 0.02562 * 19 2 1 38 38 H 1.09010 * 117.49514 * 145.01661 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 1.6686 2.1723 1.1221 5 6 1.7835 1.4333 2.3859 6 6 1.1018 2.2242 3.5047 7 6 1.7683 3.5968 3.6320 8 6 1.6774 4.3262 2.2889 9 1 0.6304 4.4882 2.0328 10 6 2.3824 5.6545 2.3879 11 1 3.2212 5.8700 1.7427 12 6 1.9566 6.5945 3.3023 13 7 0.9349 6.3321 4.0877 14 14 2.8308 8.2406 3.4256 15 1 2.7460 8.9450 2.1211 16 1 2.1852 9.0664 4.4775 17 1 4.2566 8.0188 3.7766 18 6 2.3425 3.4743 1.2053 19 6 2.2365 -1.1212 -0.7646 20 6 2.2365 -1.1207 0.7654 21 9 3.4367 -0.8049 1.4112 22 9 1.4341 -2.0667 1.4121 23 1 -0.3633 -0.0110 1.0276 24 1 -0.3633 -0.8846 -0.5232 25 1 -0.3634 0.8953 -0.5044 26 1 3.2688 1.2674 0.1053 27 1 1.9676 1.8894 -0.9380 28 1 1.3019 0.4609 2.2830 29 1 2.8365 1.2929 2.6301 30 1 1.2008 1.6829 4.4455 31 1 0.0456 2.3531 3.2678 32 1 2.8152 3.4692 3.9071 33 1 1.2578 4.1800 4.3985 34 1 0.6354 6.9932 4.7313 35 1 3.3929 3.3244 1.4550 36 1 2.2667 3.9844 0.2450 37 1 1.6113 -1.8587 -1.2680 38 1 3.1716 -0.8754 -1.2681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689340600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:13 Heat of formation + Delta-G solvation = -77.333738 kcal Electronic energy + Delta-G solvation = -20587.052297 eV Core-core repulsion = 17293.677748 eV Total energy + Delta-G solvation = -3293.374549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.66103 -47.30640 -38.85177 -36.77828 -33.41378 -31.55213 -29.88580 -28.49296 -26.20691 -24.93957 -22.70551 -22.07053 -21.42658 -19.41994 -18.57749 -17.62982 -16.52543 -16.25161 -15.95477 -15.05023 -14.66685 -14.33558 -14.05982 -13.78626 -13.61503 -13.42931 -13.30569 -12.87665 -12.82867 -12.48054 -12.31057 -12.15238 -11.79338 -11.42242 -11.25903 -10.91514 -10.72920 -10.65351 -10.53957 -10.08665 -9.80223 -9.65260 -9.43817 -9.01071 -8.68805 -8.28090 -7.67699 -5.95417 -4.01698 2.99313 3.04261 3.33546 3.38328 3.40597 4.00769 4.22468 4.45015 4.60236 4.70995 4.88079 5.28226 5.34621 5.38291 5.60723 5.67591 5.70438 5.81379 5.83217 5.93759 5.98152 6.12555 6.24669 6.35219 6.42861 6.53881 6.75482 6.78267 6.97932 7.24354 7.41198 7.65882 7.75817 7.81108 8.10266 8.19557 8.49869 9.02068 9.62456 11.10585 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.040154 B = 0.005053 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.141792 B = 5539.599130 C = 5670.620374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C 0.085 3.915 4 N -0.531 5.531 5 C 0.060 3.940 6 C -0.117 4.117 7 C -0.110 4.110 8 C 0.056 3.944 9 H 0.035 0.965 10 C -0.516 4.516 11 H 0.053 0.947 12 C 0.064 3.936 13 N -0.888 5.888 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.068 3.932 19 C -0.172 4.172 20 C 0.189 3.811 21 F -0.160 7.160 22 F -0.162 7.162 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.025 0.975 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.029 0.971 33 H 0.090 0.910 34 H 0.260 0.740 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.121 0.879 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 -14.077 -8.314 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.108 4.108 3 C -0.043 4.043 4 N -0.256 5.256 5 C -0.068 4.068 6 C -0.154 4.154 7 C -0.148 4.148 8 C 0.038 3.962 9 H 0.053 0.947 10 C -0.554 4.554 11 H 0.071 0.929 12 C -0.138 4.138 13 N -0.527 5.527 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.204 1.204 18 C -0.059 4.059 19 C -0.211 4.211 20 C 0.152 3.848 21 F -0.140 7.140 22 F -0.143 7.143 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.139 0.861 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.047 -13.915 -8.201 16.152 hybrid contribution 1.559 0.528 0.518 1.726 sum 1.512 -13.387 -7.683 15.508 Atomic orbital electron populations 1.21253 0.89304 1.02453 1.03384 1.22981 0.97821 0.91825 0.98192 1.21664 0.95913 0.89758 0.96952 1.62068 1.56978 1.03988 1.02526 1.22121 0.98339 0.96150 0.90189 1.21669 1.00361 0.98053 0.95366 1.21650 0.98048 0.92703 1.02448 1.18648 0.96654 0.91654 0.89291 0.94707 1.21108 1.15511 0.99273 1.19541 0.92924 1.24925 0.94964 0.98249 0.95632 1.69881 1.25667 1.34791 1.22370 0.86691 0.79796 0.84003 0.77676 1.20312 1.21322 1.20411 1.22321 0.95062 0.87501 1.00990 1.24546 1.04397 1.01085 0.91045 1.20247 0.81406 0.94736 0.88380 1.93022 1.44857 1.92634 1.83521 1.92995 1.72313 1.65365 1.83586 0.91016 0.92575 0.90141 0.94618 0.89401 0.92600 0.95637 0.93640 0.92124 0.95205 0.89131 0.93006 0.96212 0.92179 0.86074 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.02 37.16 0.34 -0.91 16 2 C -0.11 -1.32 1.37 -154.51 -0.21 -1.53 16 3 C 0.09 1.24 4.83 -3.83 -0.02 1.22 16 4 N -0.53 -9.66 4.45 -234.67 -1.04 -10.70 16 5 C 0.06 1.11 4.26 -3.83 -0.02 1.09 16 6 C -0.12 -2.36 6.09 -26.65 -0.16 -2.53 16 7 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 8 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 9 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 10 C -0.52 -14.13 8.56 -34.44 -0.29 -14.43 16 11 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 12 C 0.06 1.76 5.31 -17.82 -0.09 1.67 16 13 N -0.89 -25.41 11.36 55.43 0.63 -24.78 16 14 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.07 1.43 4.68 -3.83 -0.02 1.42 16 19 C -0.17 -1.66 9.87 -26.73 -0.26 -1.93 16 20 C 0.19 2.49 3.58 -26.73 -0.10 2.40 16 21 F -0.16 -2.44 15.59 2.25 0.04 -2.41 16 22 F -0.16 -2.26 17.14 2.25 0.04 -2.22 16 23 H 0.07 0.93 7.40 -51.93 -0.38 0.55 16 24 H 0.06 0.53 7.88 -51.93 -0.41 0.12 16 25 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 26 H 0.04 0.53 7.55 -51.93 -0.39 0.14 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.96 4.81 -51.93 -0.25 0.71 16 29 H 0.03 0.50 7.64 -51.93 -0.40 0.10 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 37 H 0.12 0.91 8.03 -51.93 -0.42 0.50 16 38 H 0.12 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 302.97 15.07 4.57 4.57 Total: -1.00 -28.54 302.97 -7.89 -36.43 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.91 Total: -2.02 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.18 Total: -15.12 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.41 Total: -35.48 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.07 Total: -4.63 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.54 -7.89 -36.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689340600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.905 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds