Wall clock time and date at job start Mon Mar 30 2020 06:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 115.54488 * 2 1 4 4 N 1.46898 * 109.47079 * 54.11837 * 3 2 1 5 5 C 1.46851 * 111.00087 * 52.17753 * 4 3 2 6 6 C 1.53035 * 109.52332 * 185.83594 * 5 4 3 7 7 C 1.53114 * 109.27943 * 300.82176 * 6 5 4 8 8 C 1.53111 * 109.16292 * 57.65392 * 7 6 5 9 9 H 1.09001 * 109.50729 * 62.28774 * 8 7 6 10 10 C 1.50709 * 109.53931 * 182.38522 * 8 7 6 11 11 H 1.07999 * 119.99714 * 119.81844 * 10 8 7 12 12 C 1.37877 * 119.99870 * 299.82412 * 10 8 7 13 13 N 1.31512 * 119.99963 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00035 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.46997 * 60.00114 * 14 12 10 16 16 H 1.48499 * 109.47040 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46928 * 300.00135 * 14 12 10 18 18 C 1.46849 * 110.99995 * 176.38467 * 4 3 2 19 19 C 1.52999 * 117.49958 * 214.29204 * 2 1 3 20 20 C 1.52996 * 117.49961 * 145.66960 * 2 1 3 21 21 F 1.39906 * 117.49647 * 214.98025 * 20 2 1 22 22 F 1.39897 * 117.49939 * 359.97438 * 20 2 1 23 23 H 1.09000 * 109.46947 * 269.38831 * 1 2 3 24 24 H 1.09002 * 109.46745 * 149.39930 * 1 2 3 25 25 H 1.08997 * 109.47338 * 29.39703 * 1 2 3 26 26 H 1.09001 * 109.46774 * 174.12024 * 3 2 1 27 27 H 1.09003 * 109.47183 * 294.11764 * 3 2 1 28 28 H 1.08996 * 109.45666 * 305.85249 * 5 4 3 29 29 H 1.09001 * 109.46137 * 65.82156 * 5 4 3 30 30 H 1.08993 * 109.50297 * 180.87676 * 6 5 4 31 31 H 1.09000 * 109.50270 * 60.76334 * 6 5 4 32 32 H 1.08997 * 109.52053 * 297.74689 * 7 6 5 33 33 H 1.09001 * 109.52607 * 177.56043 * 7 6 5 34 34 H 0.97003 * 120.00584 * 179.97438 * 13 12 10 35 35 H 1.09005 * 109.46288 * 294.17694 * 18 4 3 36 36 H 1.09002 * 109.45997 * 54.15467 * 18 4 3 37 37 H 1.09002 * 117.50062 * 0.02562 * 19 2 1 38 38 H 1.09010 * 117.49514 * 145.01661 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 1.6686 2.1723 1.1221 5 6 1.7835 1.4333 2.3859 6 6 1.1018 2.2242 3.5047 7 6 1.7683 3.5968 3.6320 8 6 1.6774 4.3262 2.2889 9 1 0.6304 4.4882 2.0328 10 6 2.3824 5.6545 2.3879 11 1 3.2212 5.8700 1.7427 12 6 1.9566 6.5945 3.3023 13 7 0.9349 6.3321 4.0877 14 14 2.8308 8.2406 3.4256 15 1 2.7460 8.9450 2.1211 16 1 2.1852 9.0664 4.4775 17 1 4.2566 8.0188 3.7766 18 6 2.3425 3.4743 1.2053 19 6 2.2365 -1.1212 -0.7646 20 6 2.2365 -1.1207 0.7654 21 9 3.4367 -0.8049 1.4112 22 9 1.4341 -2.0667 1.4121 23 1 -0.3633 -0.0110 1.0276 24 1 -0.3633 -0.8846 -0.5232 25 1 -0.3634 0.8953 -0.5044 26 1 3.2688 1.2674 0.1053 27 1 1.9676 1.8894 -0.9380 28 1 1.3019 0.4609 2.2830 29 1 2.8365 1.2929 2.6301 30 1 1.2008 1.6829 4.4455 31 1 0.0456 2.3531 3.2678 32 1 2.8152 3.4692 3.9071 33 1 1.2578 4.1800 4.3985 34 1 0.6354 6.9932 4.7313 35 1 3.3929 3.3244 1.4550 36 1 2.2667 3.9844 0.2450 37 1 1.6113 -1.8587 -1.2680 38 1 3.1716 -0.8754 -1.2681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689340600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:12 Heat of formation + Delta-G solvation = -93.450160 kcal Electronic energy + Delta-G solvation = -20587.751157 eV Core-core repulsion = 17293.677748 eV Total energy + Delta-G solvation = -3294.073409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -49.67775 -48.34088 -40.23969 -38.07056 -35.26051 -33.28374 -31.71775 -29.45606 -27.54529 -26.93271 -23.74883 -23.65639 -23.05345 -20.60955 -20.25862 -18.69456 -18.37394 -17.43058 -17.11587 -16.61295 -16.37358 -15.82924 -15.25740 -14.98696 -14.92308 -14.71517 -14.49887 -14.41442 -14.21243 -14.00276 -13.68175 -13.43889 -13.06606 -12.90575 -12.81300 -12.61995 -12.52314 -12.25925 -11.84846 -11.74518 -11.55791 -11.37795 -10.85577 -10.70564 -10.57226 -10.36836 -9.18373 -8.07133 -6.21320 1.42539 1.43811 1.51371 2.08003 2.11704 2.43709 2.92440 3.20056 3.32553 3.45986 3.65269 3.86838 4.14062 4.21177 4.31057 4.48721 4.54527 4.60551 4.62502 4.76266 4.78238 4.84957 4.87000 4.92060 4.97747 5.00979 5.07351 5.15865 5.34286 5.39977 5.50321 5.63404 5.94264 6.09609 6.18393 6.28261 6.44673 6.90987 7.46570 8.97582 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.040154 B = 0.005053 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.141792 B = 5539.599130 C = 5670.620374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.117 4.117 3 C 0.084 3.916 4 N -0.535 5.535 5 C 0.071 3.929 6 C -0.111 4.111 7 C -0.103 4.103 8 C 0.054 3.946 9 H 0.002 0.998 10 C -0.537 4.537 11 H 0.052 0.948 12 C 0.014 3.986 13 N -0.916 5.916 14 Si 0.954 3.046 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.082 3.918 19 C -0.130 4.130 20 C 0.158 3.842 21 F -0.178 7.178 22 F -0.170 7.170 23 H 0.052 0.948 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.016 0.984 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.018 0.982 33 H 0.059 0.941 34 H 0.260 0.740 35 H 0.012 0.988 36 H 0.066 0.934 37 H 0.152 0.848 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 -15.180 -10.083 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.118 4.118 3 C -0.043 4.043 4 N -0.260 5.260 5 C -0.057 4.057 6 C -0.149 4.149 7 C -0.141 4.141 8 C 0.035 3.965 9 H 0.020 0.980 10 C -0.575 4.575 11 H 0.071 0.929 12 C -0.184 4.184 13 N -0.555 5.555 14 Si 0.780 3.220 15 H -0.194 1.194 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.046 4.046 19 C -0.167 4.167 20 C 0.121 3.879 21 F -0.158 7.158 22 F -0.151 7.151 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.123 0.877 28 H 0.092 0.908 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.085 0.915 37 H 0.169 0.831 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.429 -15.032 -9.985 18.051 hybrid contribution 1.386 0.856 1.066 1.947 sum 1.815 -14.176 -8.919 16.847 Atomic orbital electron populations 1.21243 0.88821 1.03601 1.02504 1.22953 0.98157 0.90913 0.99802 1.21756 0.95957 0.90805 0.95817 1.61987 1.56983 1.03469 1.03524 1.21985 0.97536 0.96428 0.89725 1.21587 0.99749 0.96313 0.97235 1.21461 0.97159 0.94449 1.01059 1.18569 0.94770 0.92059 0.91072 0.98021 1.21494 1.15726 1.00665 1.19664 0.92932 1.25717 0.95652 1.01776 0.95288 1.70028 1.26882 1.35818 1.22814 0.85674 0.78692 0.79747 0.77901 1.19433 1.20996 1.19883 1.21995 0.94163 0.88717 0.99695 1.24705 1.04850 0.98966 0.88224 1.20735 0.81126 0.95537 0.90455 1.92982 1.45845 1.92864 1.84155 1.92974 1.72505 1.65555 1.84038 0.92940 0.89960 0.90483 0.94766 0.87746 0.90805 0.96620 0.92020 0.92627 0.96343 0.92248 0.93066 0.97021 0.91532 0.83063 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.18 9.02 71.98 0.65 -1.53 16 2 C -0.12 -2.56 1.37 -52.18 -0.07 -2.63 16 3 C 0.08 2.27 4.83 86.30 0.42 2.69 16 4 N -0.54 -19.09 4.45 -896.35 -3.99 -23.08 16 5 C 0.07 2.60 4.26 86.32 0.37 2.96 16 6 C -0.11 -4.55 6.09 30.64 0.19 -4.36 16 7 C -0.10 -5.13 5.03 30.67 0.15 -4.97 16 8 C 0.05 2.79 2.26 -11.49 -0.03 2.76 16 9 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 10 C -0.54 -30.01 8.56 25.60 0.22 -29.79 16 11 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 12 C 0.01 0.81 5.31 84.65 0.45 1.26 16 13 N -0.92 -53.78 11.36 21.45 0.24 -53.54 16 14 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 C 0.08 3.46 4.68 86.32 0.40 3.86 16 19 C -0.13 -1.95 9.87 30.59 0.30 -1.65 16 20 C 0.16 3.79 3.58 30.59 0.11 3.90 16 21 F -0.18 -5.19 15.59 44.97 0.70 -4.49 16 22 F -0.17 -4.40 17.14 44.97 0.77 -3.63 16 23 H 0.05 1.29 7.40 -2.39 -0.02 1.27 16 24 H 0.08 1.26 7.88 -2.39 -0.02 1.24 16 25 H 0.08 1.65 8.04 -2.39 -0.02 1.63 16 26 H 0.03 0.95 7.55 -2.39 -0.02 0.94 16 27 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.07 2.46 4.81 -2.39 -0.01 2.45 16 29 H 0.02 0.60 7.64 -2.39 -0.02 0.59 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 31 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 3.31 6.17 -2.39 -0.01 3.30 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.07 2.70 8.12 -2.39 -0.02 2.68 16 37 H 0.15 1.43 8.03 -2.39 -0.02 1.41 16 38 H 0.14 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -63.01 302.97 3.95 -59.06 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.03 Total: 7.18 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 3.16 Total: -27.50 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -3.75 Total: -76.62 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 1.47 Total: -8.12 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -63.01 3.95 -59.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689340600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.391 kcal (2) G-P(sol) polarization free energy of solvation -63.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds