Wall clock time and date at job start Mon Mar 30 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 115.54682 * 2 1 4 4 N 1.46906 * 109.47155 * 36.19803 * 3 2 1 5 5 C 1.46846 * 110.99830 * 75.75782 * 4 3 2 6 6 C 1.53042 * 109.52096 * 185.84087 * 5 4 3 7 7 C 1.53117 * 109.27691 * 300.82163 * 6 5 4 8 8 C 1.50704 * 109.52220 * 177.56141 * 7 6 5 9 9 H 1.07997 * 119.99624 * 332.62144 * 8 7 6 10 10 C 1.37876 * 119.99921 * 152.62484 * 8 7 6 11 11 N 1.31507 * 120.00187 * 6.61170 * 10 8 7 12 12 Si 1.86800 * 119.99557 * 186.61238 * 10 8 7 13 13 H 1.48501 * 109.46893 * 179.97438 * 12 10 8 14 14 H 1.48498 * 109.47624 * 299.99814 * 12 10 8 15 15 H 1.48503 * 109.47164 * 60.00323 * 12 10 8 16 16 C 1.53116 * 109.21479 * 57.62092 * 7 6 5 17 17 C 1.46851 * 111.00014 * 199.96847 * 4 3 2 18 18 C 1.52993 * 117.50192 * 214.33493 * 2 1 3 19 19 C 1.52991 * 117.52130 * 145.70299 * 2 1 3 20 20 F 1.39900 * 117.50093 * 214.97345 * 19 2 1 21 21 F 1.39904 * 117.49559 * 359.97438 * 19 2 1 22 22 H 1.09004 * 109.46863 * 60.11034 * 1 2 3 23 23 H 1.09004 * 109.46902 * 180.10112 * 1 2 3 24 24 H 1.08999 * 109.47521 * 300.10771 * 1 2 3 25 25 H 1.09000 * 109.47395 * 276.19900 * 3 2 1 26 26 H 1.09002 * 109.47223 * 156.19285 * 3 2 1 27 27 H 1.08992 * 109.46493 * 65.82420 * 5 4 3 28 28 H 1.08997 * 109.45186 * 305.84700 * 5 4 3 29 29 H 1.09002 * 109.50296 * 180.88036 * 6 5 4 30 30 H 1.09001 * 109.53545 * 60.77750 * 6 5 4 31 31 H 1.09004 * 109.52189 * 297.68594 * 7 6 5 32 32 H 0.97007 * 120.00425 * 355.36112 * 11 10 8 33 33 H 1.09007 * 109.50226 * 62.32251 * 16 7 6 34 34 H 1.09000 * 109.50407 * 182.43184 * 16 7 6 35 35 H 1.09001 * 109.46281 * 294.17394 * 17 4 3 36 36 H 1.08995 * 109.46173 * 54.15252 * 17 4 3 37 37 H 1.08998 * 117.49946 * 359.97051 * 18 2 1 38 38 H 1.09004 * 117.50192 * 144.97309 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 1.3926 2.3043 0.8180 5 6 1.5961 2.0490 2.2497 6 6 0.6449 2.9271 3.0660 7 6 0.9174 4.3997 2.7472 8 6 -0.0562 5.2671 3.5027 9 1 -1.0269 4.8792 3.7742 10 6 0.2922 6.5558 3.8473 11 7 1.4182 7.0727 3.4064 12 14 -0.8352 7.5675 4.9403 13 1 -0.2373 8.9087 5.1615 14 1 -2.1584 7.7173 4.2831 15 1 -1.0058 6.8808 6.2459 16 6 0.7470 4.6295 1.2430 17 6 1.6942 3.7011 0.4795 18 6 2.2365 -1.1206 -0.7654 19 6 2.2370 -1.1209 0.7645 20 9 3.4372 -0.8052 1.4102 21 9 1.4348 -2.0675 1.4109 22 1 -0.3633 0.5121 -0.8910 23 1 -0.3633 -1.0277 0.0018 24 1 -0.3634 0.5155 0.8890 25 1 2.2464 1.7561 -1.0216 26 1 3.1949 1.3028 0.4148 27 1 2.6263 2.2831 2.5175 28 1 1.3948 0.9993 2.4634 29 1 0.8070 2.7488 4.1290 30 1 -0.3862 2.6840 2.8093 31 1 1.9358 4.6536 3.0414 32 1 2.0355 6.5262 2.8951 33 1 -0.2823 4.4139 0.9562 34 1 0.9820 5.6668 1.0045 35 1 2.7240 3.9275 0.7557 36 1 1.5641 3.8512 -0.5922 37 1 1.6113 -1.8582 -1.2686 38 1 3.1712 -0.8744 -1.2693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689340625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:02 Heat of formation + Delta-G solvation = -83.593072 kcal Electronic energy + Delta-G solvation = -20355.623338 eV Core-core repulsion = 17061.977364 eV Total energy + Delta-G solvation = -3293.645974 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.70050 -47.37237 -38.91548 -36.97547 -33.87778 -31.20436 -30.06326 -28.46601 -26.70971 -24.21061 -22.79896 -22.17536 -21.69191 -19.55660 -18.91544 -17.69488 -16.81509 -16.52915 -15.97705 -15.29295 -14.71793 -14.19268 -14.00177 -13.69823 -13.66711 -13.62614 -13.41163 -13.24856 -12.94995 -12.65338 -12.33642 -12.06614 -11.79548 -11.59574 -11.34040 -10.93615 -10.74714 -10.71240 -10.35593 -10.24084 -10.07331 -9.73980 -9.53004 -9.12689 -8.47475 -8.19920 -7.93240 -6.31623 -4.00298 2.94225 3.00827 3.46061 3.47761 3.66283 3.87184 4.18766 4.52638 4.56317 4.57719 4.85134 5.23121 5.33019 5.37322 5.41711 5.56001 5.59493 5.73074 5.78488 5.87331 5.89251 5.98274 6.01899 6.21833 6.31805 6.36197 6.53525 6.59425 6.89440 6.95098 7.10007 7.40201 7.46791 7.63373 7.73895 8.31101 8.50053 8.93530 9.71282 11.07851 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.039215 B = 0.004729 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.850023 B = 5918.872854 C = 6058.322579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.101 4.101 3 C 0.082 3.918 4 N -0.528 5.528 5 C 0.058 3.942 6 C -0.099 4.099 7 C 0.030 3.970 8 C -0.590 4.590 9 H 0.048 0.952 10 C 0.019 3.981 11 N -0.915 5.915 12 Si 1.066 2.934 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.289 1.289 16 C -0.103 4.103 17 C 0.057 3.943 18 C -0.174 4.174 19 C 0.187 3.813 20 F -0.162 7.162 21 F -0.162 7.162 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.044 0.956 27 H 0.025 0.975 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.269 0.731 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.059 0.941 37 H 0.121 0.879 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 -14.863 -9.181 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.103 4.103 3 C -0.047 4.047 4 N -0.252 5.252 5 C -0.069 4.069 6 C -0.137 4.137 7 C 0.011 3.989 8 C -0.628 4.628 9 H 0.066 0.934 10 C -0.185 4.185 11 N -0.551 5.551 12 Si 0.894 3.106 13 H -0.209 1.209 14 H -0.215 1.215 15 H -0.215 1.215 16 C -0.141 4.141 17 C -0.071 4.071 18 C -0.212 4.212 19 C 0.151 3.849 20 F -0.142 7.142 21 F -0.143 7.143 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.139 0.861 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.848 -13.438 -8.548 15.949 hybrid contribution 1.262 -1.643 -0.307 2.094 sum 2.110 -15.081 -8.856 17.615 Atomic orbital electron populations 1.21179 0.89197 1.01356 1.04465 1.22952 0.97995 0.91469 0.97885 1.21601 0.94364 0.89614 0.99096 1.61888 1.54767 1.03691 1.04855 1.22198 0.98319 0.99221 0.87192 1.21607 0.98008 0.96791 0.97264 1.18885 0.97275 0.91225 0.91471 1.21943 1.02050 1.00366 1.38460 0.93414 1.25788 0.99189 0.96234 0.97308 1.70804 1.10639 1.38257 1.35449 0.83591 0.74964 0.76070 0.75946 1.20925 1.21521 1.21530 1.21775 0.97626 0.96645 0.98051 1.22254 0.98258 0.87357 0.99204 1.24480 1.04333 1.01409 0.90969 1.20344 0.81283 0.94898 0.88418 1.93001 1.44981 1.92649 1.83615 1.92998 1.72286 1.65371 1.83603 0.90930 0.92879 0.89859 0.89684 0.93808 0.95654 0.92457 0.92875 0.92563 0.95684 0.91981 0.92717 0.92475 0.95761 0.92213 0.86061 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 8.99 37.16 0.33 -0.90 16 2 C -0.10 -1.20 1.80 -154.51 -0.28 -1.48 16 3 C 0.08 1.09 5.09 -3.82 -0.02 1.07 16 4 N -0.53 -8.73 3.55 -234.66 -0.83 -9.56 16 5 C 0.06 1.06 5.08 -3.83 -0.02 1.04 16 6 C -0.10 -2.10 5.36 -26.65 -0.14 -2.24 16 7 C 0.03 0.74 1.81 -91.65 -0.17 0.58 16 8 C -0.59 -16.40 8.31 -34.44 -0.29 -16.68 16 9 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 10 C 0.02 0.53 5.45 -17.82 -0.10 0.43 16 11 N -0.91 -27.41 13.63 55.43 0.76 -26.66 16 12 Si 1.07 25.19 29.91 -169.99 -5.08 20.11 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 C -0.10 -2.27 5.31 -26.65 -0.14 -2.41 16 17 C 0.06 1.02 5.42 -3.83 -0.02 1.00 16 18 C -0.17 -1.59 9.93 -26.74 -0.27 -1.86 16 19 C 0.19 2.37 4.95 -26.74 -0.13 2.24 16 20 F -0.16 -2.33 16.51 2.25 0.04 -2.29 16 21 F -0.16 -2.22 16.87 2.25 0.04 -2.18 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.55 7.74 -51.93 -0.40 0.15 16 24 H 0.08 1.16 7.46 -51.93 -0.39 0.78 16 25 H 0.08 1.00 7.79 -51.93 -0.40 0.59 16 26 H 0.04 0.61 6.98 -51.93 -0.36 0.25 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.99 7.34 -51.93 -0.38 0.61 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.67 6.86 -51.93 -0.36 0.32 16 32 H 0.27 8.00 6.46 -40.82 -0.26 7.73 16 33 H 0.05 1.23 8.14 -51.92 -0.42 0.80 16 34 H 0.06 1.37 7.90 -51.93 -0.41 0.96 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 37 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 308.72 15.07 4.65 4.65 Total: -1.00 -29.59 308.72 -7.64 -37.22 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.97 Total: -2.08 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -1.24 Total: -19.21 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.08 Total: -36.22 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.08 Total: -4.47 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.59 -7.64 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689340625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.369 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds