Wall clock time and date at job start Mon Mar 30 2020 06:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 115.54682 * 2 1 4 4 N 1.46906 * 109.47155 * 36.19803 * 3 2 1 5 5 C 1.46846 * 110.99830 * 75.75782 * 4 3 2 6 6 C 1.53042 * 109.52096 * 185.84087 * 5 4 3 7 7 C 1.53117 * 109.27691 * 300.82163 * 6 5 4 8 8 C 1.50704 * 109.52220 * 177.56141 * 7 6 5 9 9 H 1.07997 * 119.99624 * 332.62144 * 8 7 6 10 10 C 1.37876 * 119.99921 * 152.62484 * 8 7 6 11 11 N 1.31507 * 120.00187 * 6.61170 * 10 8 7 12 12 Si 1.86800 * 119.99557 * 186.61238 * 10 8 7 13 13 H 1.48501 * 109.46893 * 179.97438 * 12 10 8 14 14 H 1.48498 * 109.47624 * 299.99814 * 12 10 8 15 15 H 1.48503 * 109.47164 * 60.00323 * 12 10 8 16 16 C 1.53116 * 109.21479 * 57.62092 * 7 6 5 17 17 C 1.46851 * 111.00014 * 199.96847 * 4 3 2 18 18 C 1.52993 * 117.50192 * 214.33493 * 2 1 3 19 19 C 1.52991 * 117.52130 * 145.70299 * 2 1 3 20 20 F 1.39900 * 117.50093 * 214.97345 * 19 2 1 21 21 F 1.39904 * 117.49559 * 359.97438 * 19 2 1 22 22 H 1.09004 * 109.46863 * 60.11034 * 1 2 3 23 23 H 1.09004 * 109.46902 * 180.10112 * 1 2 3 24 24 H 1.08999 * 109.47521 * 300.10771 * 1 2 3 25 25 H 1.09000 * 109.47395 * 276.19900 * 3 2 1 26 26 H 1.09002 * 109.47223 * 156.19285 * 3 2 1 27 27 H 1.08992 * 109.46493 * 65.82420 * 5 4 3 28 28 H 1.08997 * 109.45186 * 305.84700 * 5 4 3 29 29 H 1.09002 * 109.50296 * 180.88036 * 6 5 4 30 30 H 1.09001 * 109.53545 * 60.77750 * 6 5 4 31 31 H 1.09004 * 109.52189 * 297.68594 * 7 6 5 32 32 H 0.97007 * 120.00425 * 355.36112 * 11 10 8 33 33 H 1.09007 * 109.50226 * 62.32251 * 16 7 6 34 34 H 1.09000 * 109.50407 * 182.43184 * 16 7 6 35 35 H 1.09001 * 109.46281 * 294.17394 * 17 4 3 36 36 H 1.08995 * 109.46173 * 54.15252 * 17 4 3 37 37 H 1.08998 * 117.49946 * 359.97051 * 18 2 1 38 38 H 1.09004 * 117.50192 * 144.97309 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 1.3926 2.3043 0.8180 5 6 1.5961 2.0490 2.2497 6 6 0.6449 2.9271 3.0660 7 6 0.9174 4.3997 2.7472 8 6 -0.0562 5.2671 3.5027 9 1 -1.0269 4.8792 3.7742 10 6 0.2922 6.5558 3.8473 11 7 1.4182 7.0727 3.4064 12 14 -0.8352 7.5675 4.9403 13 1 -0.2373 8.9087 5.1615 14 1 -2.1584 7.7173 4.2831 15 1 -1.0058 6.8808 6.2459 16 6 0.7470 4.6295 1.2430 17 6 1.6942 3.7011 0.4795 18 6 2.2365 -1.1206 -0.7654 19 6 2.2370 -1.1209 0.7645 20 9 3.4372 -0.8052 1.4102 21 9 1.4348 -2.0675 1.4109 22 1 -0.3633 0.5121 -0.8910 23 1 -0.3633 -1.0277 0.0018 24 1 -0.3634 0.5155 0.8890 25 1 2.2464 1.7561 -1.0216 26 1 3.1949 1.3028 0.4148 27 1 2.6263 2.2831 2.5175 28 1 1.3948 0.9993 2.4634 29 1 0.8070 2.7488 4.1290 30 1 -0.3862 2.6840 2.8093 31 1 1.9358 4.6536 3.0414 32 1 2.0355 6.5262 2.8951 33 1 -0.2823 4.4139 0.9562 34 1 0.9820 5.6668 1.0045 35 1 2.7240 3.9275 0.7557 36 1 1.5641 3.8512 -0.5922 37 1 1.6113 -1.8582 -1.2686 38 1 3.1712 -0.8744 -1.2693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689340625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:01 Heat of formation + Delta-G solvation = -99.867169 kcal Electronic energy + Delta-G solvation = -20356.329035 eV Core-core repulsion = 17061.977364 eV Total energy + Delta-G solvation = -3294.351672 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.67308 -48.36449 -40.28046 -38.18371 -35.68226 -33.03375 -31.69494 -29.42885 -28.19888 -26.00619 -24.03239 -23.43117 -23.40526 -20.71282 -20.47835 -18.89756 -18.66707 -17.51423 -16.94946 -16.73267 -16.06346 -15.65318 -15.61695 -15.34544 -15.03874 -14.75198 -14.59681 -14.40397 -14.09219 -14.02363 -13.74547 -13.32696 -13.15414 -13.07771 -12.72570 -12.49279 -12.42934 -12.19479 -12.07027 -11.94791 -11.43693 -11.37164 -11.05568 -10.61587 -10.56132 -10.25952 -9.33543 -8.58713 -6.27731 1.53273 1.60937 1.80033 2.08196 2.13581 2.58695 2.74853 3.21850 3.34242 3.45354 3.64358 3.87728 4.07569 4.11006 4.20517 4.31528 4.43017 4.53081 4.59957 4.62340 4.69527 4.75140 4.81336 4.86890 4.88246 4.97413 5.00652 5.01634 5.16874 5.27046 5.43766 5.55830 5.73020 6.07783 6.12974 6.16236 6.27903 6.69262 7.51419 8.80954 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.039215 B = 0.004729 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.850023 B = 5918.872854 C = 6058.322579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.110 4.110 3 C 0.082 3.918 4 N -0.526 5.526 5 C 0.072 3.928 6 C -0.091 4.091 7 C 0.025 3.975 8 C -0.604 4.604 9 H 0.042 0.958 10 C -0.032 4.032 11 N -0.940 5.940 12 Si 1.111 2.889 13 H -0.285 1.285 14 H -0.271 1.271 15 H -0.274 1.274 16 C -0.092 4.092 17 C 0.067 3.933 18 C -0.131 4.131 19 C 0.154 3.846 20 F -0.178 7.178 21 F -0.173 7.173 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.111 0.889 26 H 0.039 0.961 27 H 0.014 0.986 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.054 0.946 31 H -0.007 1.007 32 H 0.257 0.743 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.016 0.984 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 -16.296 -10.880 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 C -0.046 4.046 4 N -0.251 5.251 5 C -0.056 4.056 6 C -0.129 4.129 7 C 0.006 3.994 8 C -0.642 4.642 9 H 0.060 0.940 10 C -0.230 4.230 11 N -0.578 5.578 12 Si 0.934 3.066 13 H -0.211 1.211 14 H -0.196 1.196 15 H -0.199 1.199 16 C -0.131 4.131 17 C -0.061 4.061 18 C -0.169 4.169 19 C 0.118 3.882 20 F -0.159 7.159 21 F -0.154 7.154 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.129 0.871 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.012 0.988 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.110 0.890 37 H 0.165 0.835 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.388 -14.904 -10.263 18.100 hybrid contribution 1.400 -1.244 0.221 1.886 sum 1.788 -16.148 -10.042 19.100 Atomic orbital electron populations 1.21132 0.89163 1.01951 1.03597 1.22927 0.98015 0.90964 0.99304 1.21711 0.93643 0.89738 0.99518 1.61844 1.55769 1.03428 1.04028 1.21965 0.96556 0.98937 0.88164 1.21454 0.98758 0.95280 0.97456 1.18888 0.94683 0.92834 0.93002 1.22330 1.02309 1.00983 1.38541 0.93979 1.27179 0.99819 0.97907 0.98070 1.70920 1.11578 1.38393 1.36880 0.83004 0.73940 0.74638 0.75069 1.21105 1.19640 1.19908 1.21517 0.98462 0.96364 0.96748 1.22084 0.96359 0.87430 1.00219 1.24635 1.04845 0.99254 0.88125 1.20871 0.81091 0.95769 0.90487 1.92963 1.45839 1.92855 1.84218 1.92968 1.72594 1.65712 1.84118 0.89871 0.91607 0.92624 0.87132 0.94274 0.96777 0.91207 0.93818 0.92698 0.98841 0.93269 0.93148 0.95116 0.96563 0.89041 0.83461 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 8.99 71.98 0.65 -1.47 16 2 C -0.11 -2.28 1.80 -52.19 -0.09 -2.37 16 3 C 0.08 1.95 5.09 86.30 0.44 2.39 16 4 N -0.53 -16.64 3.55 -896.34 -3.18 -19.82 16 5 C 0.07 2.60 5.08 86.33 0.44 3.04 16 6 C -0.09 -3.96 5.36 30.65 0.16 -3.80 16 7 C 0.02 1.26 1.81 -11.46 -0.02 1.24 16 8 C -0.60 -34.34 8.31 25.60 0.21 -34.13 16 9 H 0.04 2.39 7.82 -2.91 -0.02 2.36 16 10 C -0.03 -1.86 5.45 84.66 0.46 -1.39 16 11 N -0.94 -57.92 13.63 21.45 0.29 -57.63 16 12 Si 1.11 50.95 29.91 68.60 2.05 53.00 16 13 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 C -0.09 -4.15 5.31 30.65 0.16 -3.99 16 17 C 0.07 2.33 5.42 86.32 0.47 2.80 16 18 C -0.13 -1.83 9.93 30.59 0.30 -1.52 16 19 C 0.15 3.55 4.95 30.59 0.15 3.70 16 20 F -0.18 -4.89 16.51 44.97 0.74 -4.15 16 21 F -0.17 -4.47 16.87 44.97 0.76 -3.72 16 22 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.06 1.19 7.74 -2.38 -0.02 1.17 16 24 H 0.05 1.47 7.46 -2.39 -0.02 1.45 16 25 H 0.11 2.11 7.79 -2.39 -0.02 2.10 16 26 H 0.04 1.00 6.98 -2.39 -0.02 0.99 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 2.37 7.34 -2.39 -0.02 2.35 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 31 H -0.01 -0.38 6.86 -2.39 -0.02 -0.39 16 32 H 0.26 15.98 6.46 -92.70 -0.60 15.38 16 33 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.03 1.51 7.90 -2.39 -0.02 1.49 16 35 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 2.66 7.93 -2.39 -0.02 2.64 16 37 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -65.98 308.72 5.20 -60.78 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.20 Total: 7.05 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 3.33 Total: -35.51 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -2.89 Total: -77.45 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 1.50 Total: -7.87 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.05 Total: 53.00 kcal Total: -65.98 5.20 -60.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689340625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.087 kcal (2) G-P(sol) polarization free energy of solvation -65.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds