Wall clock time and date at job start Mon Mar 30 2020 06:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 115.55626 * 2 1 4 4 N 1.46898 * 109.47031 * 325.58563 * 3 2 1 5 5 C 1.46848 * 111.00274 * 169.99718 * 4 3 2 6 6 C 1.53035 * 109.52479 * 185.83648 * 5 4 3 7 7 C 1.53126 * 109.28049 * 300.82160 * 6 5 4 8 8 C 1.50697 * 109.52495 * 177.55620 * 7 6 5 9 9 H 1.08001 * 120.00160 * 356.24003 * 8 7 6 10 10 C 1.37878 * 119.99988 * 176.23288 * 8 7 6 11 11 N 1.31511 * 119.99919 * 352.60509 * 10 8 7 12 12 Si 1.86801 * 119.99792 * 172.60136 * 10 8 7 13 13 H 1.48499 * 109.47177 * 265.08590 * 12 10 8 14 14 H 1.48506 * 109.46866 * 145.08571 * 12 10 8 15 15 H 1.48498 * 109.46982 * 25.08974 * 12 10 8 16 16 C 1.53120 * 109.15743 * 57.65143 * 7 6 5 17 17 C 1.46846 * 110.99830 * 294.20801 * 4 3 2 18 18 C 1.52999 * 117.49601 * 145.67226 * 2 1 3 19 19 C 1.53005 * 117.49581 * 214.32773 * 2 1 3 20 20 F 1.39893 * 117.50040 * 359.97438 * 19 2 1 21 21 F 1.39908 * 117.49586 * 145.00420 * 19 2 1 22 22 H 1.09006 * 109.46835 * 34.41802 * 1 2 3 23 23 H 1.08993 * 109.47156 * 154.41370 * 1 2 3 24 24 H 1.08999 * 109.47177 * 274.41920 * 1 2 3 25 25 H 1.08996 * 109.47600 * 205.58040 * 3 2 1 26 26 H 1.09005 * 109.46962 * 85.57839 * 3 2 1 27 27 H 1.09004 * 109.45780 * 65.82397 * 5 4 3 28 28 H 1.08993 * 109.46090 * 305.85080 * 5 4 3 29 29 H 1.08996 * 109.50548 * 180.87953 * 6 5 4 30 30 H 1.09001 * 109.53514 * 60.77549 * 6 5 4 31 31 H 1.08996 * 109.51852 * 297.68890 * 7 6 5 32 32 H 0.96999 * 120.00010 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.50559 * 62.28874 * 16 7 6 34 34 H 1.09002 * 109.50176 * 182.40304 * 16 7 6 35 35 H 1.09008 * 109.46355 * 294.17678 * 17 4 3 36 36 H 1.09000 * 109.46721 * 54.15368 * 17 4 3 37 37 H 1.09001 * 117.50344 * 215.00232 * 18 2 1 38 38 H 1.09007 * 117.50122 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 7 1.3704 2.3149 -0.7828 5 6 1.8394 3.6960 -0.6124 6 6 0.8790 4.6534 -1.3216 7 6 0.8155 4.2960 -2.8092 8 6 -0.1742 5.1969 -3.5019 9 1 -0.7499 5.9085 -2.9287 10 6 -0.3446 5.1129 -4.8675 11 7 0.4550 4.3539 -5.5845 12 14 -1.7113 6.0771 -5.6993 13 1 -2.9071 5.2099 -5.8514 14 1 -1.2542 6.5293 -7.0379 15 1 -2.0590 7.2587 -4.8697 16 6 0.3712 2.8382 -2.9572 17 6 1.3463 1.9334 -2.2006 18 6 2.2363 -1.1208 0.7653 19 6 2.2364 -1.1208 -0.7654 20 9 1.4339 -2.0674 -1.4111 21 9 3.4364 -0.8050 -1.4116 22 1 -0.3633 0.8478 -0.5809 23 1 -0.3633 -0.9268 -0.4438 24 1 -0.3633 0.0792 1.0246 25 1 3.1830 1.3083 -0.4437 26 1 2.2753 1.7422 1.0247 27 1 2.8360 3.7967 -1.0424 28 1 1.8759 3.9388 0.4495 29 1 1.2358 5.6771 -1.2083 30 1 -0.1149 4.5638 -0.8832 31 1 1.8009 4.4247 -3.2571 32 1 0.3349 4.2945 -6.5452 33 1 -0.6306 2.7193 -2.5443 34 1 0.3652 2.5649 -4.0124 35 1 2.3452 2.0424 -2.6231 36 1 1.0245 0.8960 -2.2922 37 1 3.1712 -0.8748 1.2689 38 1 1.6111 -1.8584 1.2685 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689340628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:04 Heat of formation + Delta-G solvation = -77.177147 kcal Electronic energy + Delta-G solvation = -20450.850201 eV Core-core repulsion = 17157.482443 eV Total energy + Delta-G solvation = -3293.367759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.61720 -47.28944 -38.85053 -36.79078 -33.60415 -31.25422 -29.89671 -28.35884 -26.88128 -24.43982 -22.72117 -22.00922 -21.52524 -19.43483 -18.60097 -17.60271 -16.47206 -16.34113 -15.90309 -15.30038 -14.58091 -14.43554 -14.09664 -13.89336 -13.58453 -13.31773 -13.07461 -13.04461 -12.73701 -12.47827 -12.30628 -12.02551 -11.69527 -11.37222 -11.26555 -11.03998 -10.79490 -10.58159 -10.27153 -10.21578 -10.04873 -9.67610 -9.40412 -8.90113 -8.71588 -8.27222 -7.82218 -5.96867 -3.99027 3.01659 3.08854 3.33372 3.40676 3.43495 3.98578 4.27392 4.47975 4.61385 4.66798 4.95318 5.28956 5.35103 5.41294 5.51235 5.67114 5.70327 5.79560 5.89664 5.92336 6.03362 6.09795 6.23162 6.30737 6.51733 6.59196 6.63408 6.84247 7.06479 7.12932 7.38688 7.57571 7.64463 7.82955 8.04684 8.09608 8.50020 9.05049 9.64572 11.11878 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.030789 B = 0.005282 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.201061 B = 5299.358308 C = 5626.031183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.102 4.102 3 C 0.083 3.917 4 N -0.529 5.529 5 C 0.060 3.940 6 C -0.105 4.105 7 C 0.046 3.954 8 C -0.512 4.512 9 H 0.054 0.946 10 C 0.062 3.938 11 N -0.891 5.891 12 Si 0.887 3.113 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.275 1.275 16 C -0.099 4.099 17 C 0.055 3.945 18 C -0.174 4.174 19 C 0.188 3.812 20 F -0.161 7.161 21 F -0.161 7.161 22 H 0.098 0.902 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.025 0.975 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.025 0.975 32 H 0.259 0.741 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.024 0.976 36 H 0.055 0.945 37 H 0.118 0.882 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 -9.805 12.829 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.103 4.103 3 C -0.046 4.046 4 N -0.254 5.254 5 C -0.067 4.067 6 C -0.143 4.143 7 C 0.028 3.972 8 C -0.550 4.550 9 H 0.073 0.927 10 C -0.139 4.139 11 N -0.529 5.529 12 Si 0.715 3.285 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.199 1.199 16 C -0.137 4.137 17 C -0.072 4.072 18 C -0.212 4.212 19 C 0.151 3.849 20 F -0.142 7.142 21 F -0.142 7.142 22 H 0.116 0.884 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.137 0.863 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.954 -9.885 12.760 16.409 hybrid contribution 0.314 0.232 -1.114 1.180 sum 3.268 -9.653 11.646 15.476 Atomic orbital electron populations 1.21388 0.89285 1.03981 1.03088 1.22904 0.98027 0.91488 0.97917 1.21580 0.94243 0.89429 0.99342 1.61991 1.51197 1.01828 1.10337 1.22127 0.97237 0.88110 0.99251 1.21669 0.97877 0.96095 0.98665 1.18695 0.97115 0.92079 0.89344 1.21184 1.22105 1.19603 0.92104 0.92734 1.24967 0.95915 0.95551 0.97460 1.69950 1.36804 1.40027 1.06144 0.86668 0.82695 0.80284 0.78879 1.20755 1.21411 1.19943 1.21593 0.96192 0.96363 0.99547 1.22295 0.99397 0.99148 0.86333 1.24483 1.04270 1.01499 0.90953 1.20354 0.81302 0.94879 0.88347 1.92988 1.72255 1.65301 1.83637 1.93004 1.44931 1.92639 1.83596 0.88353 0.92423 0.91518 0.94091 0.89775 0.95642 0.92294 0.93054 0.92460 0.95647 0.93118 0.93621 0.90361 0.95754 0.92633 0.86350 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 9.24 37.16 0.34 -1.17 16 2 C -0.10 -1.28 1.54 -154.51 -0.24 -1.51 16 3 C 0.08 1.13 5.07 -3.83 -0.02 1.11 16 4 N -0.53 -8.94 3.42 -234.67 -0.80 -9.75 16 5 C 0.06 1.04 5.46 -3.83 -0.02 1.02 16 6 C -0.11 -2.16 5.32 -26.65 -0.14 -2.30 16 7 C 0.05 1.14 2.05 -91.65 -0.19 0.96 16 8 C -0.51 -14.04 8.51 -34.44 -0.29 -14.33 16 9 H 0.05 1.48 7.76 -52.49 -0.41 1.08 16 10 C 0.06 1.73 5.24 -17.82 -0.09 1.64 16 11 N -0.89 -25.78 11.99 55.43 0.66 -25.12 16 12 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 16 C -0.10 -2.30 5.17 -26.65 -0.14 -2.44 16 17 C 0.06 1.09 4.72 -3.83 -0.02 1.07 16 18 C -0.17 -1.69 9.94 -26.69 -0.27 -1.95 16 19 C 0.19 2.54 4.94 -26.69 -0.13 2.41 16 20 F -0.16 -2.37 16.50 2.25 0.04 -2.33 16 21 F -0.16 -2.47 16.50 2.25 0.04 -2.43 16 22 H 0.10 1.48 6.08 -51.93 -0.32 1.17 16 23 H 0.06 0.70 7.10 -51.93 -0.37 0.33 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.60 7.08 -51.93 -0.37 0.23 16 26 H 0.08 0.99 7.99 -51.93 -0.41 0.57 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.87 8.01 -51.93 -0.42 0.46 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.08 2.05 6.77 -51.93 -0.35 1.70 16 35 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.06 1.05 6.34 -51.93 -0.33 0.72 16 37 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -28.72 305.18 -7.60 -36.32 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.91 Total: -2.17 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.20 Total: -15.49 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.14 Total: -34.86 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.07 Total: -4.77 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.72 -7.60 -36.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689340628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.856 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds