Wall clock time and date at job start Mon Mar 30 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 115.55626 * 2 1 4 4 N 1.46898 * 109.47031 * 325.58563 * 3 2 1 5 5 C 1.46848 * 111.00274 * 169.99718 * 4 3 2 6 6 C 1.53035 * 109.52479 * 185.83648 * 5 4 3 7 7 C 1.53126 * 109.28049 * 300.82160 * 6 5 4 8 8 C 1.50697 * 109.52495 * 177.55620 * 7 6 5 9 9 H 1.08001 * 120.00160 * 356.24003 * 8 7 6 10 10 C 1.37878 * 119.99988 * 176.23288 * 8 7 6 11 11 N 1.31511 * 119.99919 * 352.60509 * 10 8 7 12 12 Si 1.86801 * 119.99792 * 172.60136 * 10 8 7 13 13 H 1.48499 * 109.47177 * 265.08590 * 12 10 8 14 14 H 1.48506 * 109.46866 * 145.08571 * 12 10 8 15 15 H 1.48498 * 109.46982 * 25.08974 * 12 10 8 16 16 C 1.53120 * 109.15743 * 57.65143 * 7 6 5 17 17 C 1.46846 * 110.99830 * 294.20801 * 4 3 2 18 18 C 1.52999 * 117.49601 * 145.67226 * 2 1 3 19 19 C 1.53005 * 117.49581 * 214.32773 * 2 1 3 20 20 F 1.39893 * 117.50040 * 359.97438 * 19 2 1 21 21 F 1.39908 * 117.49586 * 145.00420 * 19 2 1 22 22 H 1.09006 * 109.46835 * 34.41802 * 1 2 3 23 23 H 1.08993 * 109.47156 * 154.41370 * 1 2 3 24 24 H 1.08999 * 109.47177 * 274.41920 * 1 2 3 25 25 H 1.08996 * 109.47600 * 205.58040 * 3 2 1 26 26 H 1.09005 * 109.46962 * 85.57839 * 3 2 1 27 27 H 1.09004 * 109.45780 * 65.82397 * 5 4 3 28 28 H 1.08993 * 109.46090 * 305.85080 * 5 4 3 29 29 H 1.08996 * 109.50548 * 180.87953 * 6 5 4 30 30 H 1.09001 * 109.53514 * 60.77549 * 6 5 4 31 31 H 1.08996 * 109.51852 * 297.68890 * 7 6 5 32 32 H 0.96999 * 120.00010 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.50559 * 62.28874 * 16 7 6 34 34 H 1.09002 * 109.50176 * 182.40304 * 16 7 6 35 35 H 1.09008 * 109.46355 * 294.17678 * 17 4 3 36 36 H 1.09000 * 109.46721 * 54.15368 * 17 4 3 37 37 H 1.09001 * 117.50344 * 215.00232 * 18 2 1 38 38 H 1.09007 * 117.50122 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 7 1.3704 2.3149 -0.7828 5 6 1.8394 3.6960 -0.6124 6 6 0.8790 4.6534 -1.3216 7 6 0.8155 4.2960 -2.8092 8 6 -0.1742 5.1969 -3.5019 9 1 -0.7499 5.9085 -2.9287 10 6 -0.3446 5.1129 -4.8675 11 7 0.4550 4.3539 -5.5845 12 14 -1.7113 6.0771 -5.6993 13 1 -2.9071 5.2099 -5.8514 14 1 -1.2542 6.5293 -7.0379 15 1 -2.0590 7.2587 -4.8697 16 6 0.3712 2.8382 -2.9572 17 6 1.3463 1.9334 -2.2006 18 6 2.2363 -1.1208 0.7653 19 6 2.2364 -1.1208 -0.7654 20 9 1.4339 -2.0674 -1.4111 21 9 3.4364 -0.8050 -1.4116 22 1 -0.3633 0.8478 -0.5809 23 1 -0.3633 -0.9268 -0.4438 24 1 -0.3633 0.0792 1.0246 25 1 3.1830 1.3083 -0.4437 26 1 2.2753 1.7422 1.0247 27 1 2.8360 3.7967 -1.0424 28 1 1.8759 3.9388 0.4495 29 1 1.2358 5.6771 -1.2083 30 1 -0.1149 4.5638 -0.8832 31 1 1.8009 4.4247 -3.2571 32 1 0.3349 4.2945 -6.5452 33 1 -0.6306 2.7193 -2.5443 34 1 0.3652 2.5649 -4.0124 35 1 2.3452 2.0424 -2.6231 36 1 1.0245 0.8960 -2.2922 37 1 3.1712 -0.8748 1.2689 38 1 1.6111 -1.8584 1.2685 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689340628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:03 Heat of formation + Delta-G solvation = -92.970399 kcal Electronic energy + Delta-G solvation = -20451.535048 eV Core-core repulsion = 17157.482443 eV Total energy + Delta-G solvation = -3294.052605 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.66341 -48.35976 -40.21115 -38.04062 -35.40859 -33.08688 -31.55371 -29.40889 -28.42951 -26.14081 -23.92246 -23.37039 -23.20022 -20.54729 -20.27774 -18.66139 -18.42465 -17.51389 -16.94431 -16.89187 -16.29779 -15.93229 -15.33674 -15.03773 -14.79380 -14.69016 -14.44697 -14.42034 -14.14369 -13.94367 -13.72817 -13.13451 -13.05645 -12.99264 -12.83040 -12.59006 -12.48916 -12.18888 -12.00160 -11.89936 -11.41851 -11.35766 -10.75284 -10.68961 -10.54779 -10.40775 -9.23628 -8.11135 -6.20885 1.40457 1.41872 1.51963 2.10285 2.16392 2.44002 2.85676 3.18757 3.37519 3.48477 3.66969 3.93677 4.21830 4.25683 4.32336 4.42068 4.52851 4.61203 4.67711 4.77220 4.81129 4.85497 4.88803 4.98515 5.00215 5.06118 5.08396 5.23457 5.31912 5.50440 5.54726 5.63154 5.95715 5.99401 6.20663 6.29235 6.39807 6.92241 7.46594 8.96855 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.030789 B = 0.005282 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.201061 B = 5299.358308 C = 5626.031183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.112 4.112 3 C 0.082 3.918 4 N -0.527 5.527 5 C 0.065 3.935 6 C -0.098 4.098 7 C 0.042 3.958 8 C -0.530 4.530 9 H 0.054 0.946 10 C 0.011 3.989 11 N -0.923 5.923 12 Si 0.951 3.049 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.265 1.265 16 C -0.088 4.088 17 C 0.075 3.925 18 C -0.126 4.126 19 C 0.147 3.853 20 F -0.175 7.175 21 F -0.179 7.179 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.034 0.966 26 H 0.118 0.882 27 H 0.017 0.983 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.058 0.942 31 H -0.014 1.014 32 H 0.259 0.741 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.003 0.997 36 H 0.061 0.939 37 H 0.143 0.857 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 -10.149 15.596 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.114 4.114 3 C -0.045 4.045 4 N -0.251 5.251 5 C -0.062 4.062 6 C -0.136 4.136 7 C 0.023 3.977 8 C -0.568 4.568 9 H 0.072 0.928 10 C -0.187 4.187 11 N -0.562 5.562 12 Si 0.777 3.223 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.189 1.189 16 C -0.126 4.126 17 C -0.053 4.053 18 C -0.163 4.163 19 C 0.111 3.889 20 F -0.156 7.156 21 F -0.160 7.160 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.109 0.891 25 H 0.052 0.948 26 H 0.136 0.864 27 H 0.036 0.964 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.004 0.996 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.022 0.978 36 H 0.079 0.921 37 H 0.161 0.839 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.641 -10.228 15.548 18.797 hybrid contribution 0.423 0.343 -1.976 2.049 sum 3.065 -9.885 13.573 17.068 Atomic orbital electron populations 1.21323 0.89372 1.02594 1.04055 1.22930 0.98002 0.91263 0.99183 1.21713 0.93260 0.89392 1.00147 1.61951 1.52395 1.02441 1.08303 1.22089 0.95577 0.87537 1.01029 1.21530 0.99003 0.97326 0.95750 1.18672 0.94346 0.92563 0.92068 1.21589 1.22561 1.19981 0.92690 0.92758 1.25766 0.98048 0.96637 0.98249 1.70093 1.38378 1.41489 1.06272 0.85645 0.79732 0.79147 0.77768 1.20234 1.21207 1.18938 1.21342 0.96948 0.96505 0.97849 1.21933 0.96933 0.98403 0.88077 1.24641 1.04839 0.99177 0.87693 1.20995 0.81179 0.96043 0.90668 1.92950 1.72640 1.65750 1.84238 1.92960 1.45876 1.92875 1.84276 0.91261 0.92565 0.89064 0.94806 0.86438 0.96426 0.88244 0.92745 0.92368 0.99567 0.93210 0.94058 0.94173 0.97837 0.92098 0.83861 0.83490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.24 71.98 0.67 -1.99 16 2 C -0.11 -2.51 1.54 -52.18 -0.08 -2.59 16 3 C 0.08 2.03 5.07 86.30 0.44 2.47 16 4 N -0.53 -17.06 3.42 -896.37 -3.07 -20.13 16 5 C 0.07 2.13 5.46 86.32 0.47 2.60 16 6 C -0.10 -3.99 5.32 30.65 0.16 -3.82 16 7 C 0.04 2.15 2.05 -11.46 -0.02 2.13 16 8 C -0.53 -29.76 8.51 25.60 0.22 -29.54 16 9 H 0.05 2.98 7.76 -2.91 -0.02 2.95 16 10 C 0.01 0.64 5.24 84.66 0.44 1.08 16 11 N -0.92 -55.44 11.99 21.45 0.26 -55.18 16 12 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 16 C -0.09 -4.28 5.17 30.65 0.16 -4.12 16 17 C 0.07 3.00 4.72 86.33 0.41 3.41 16 18 C -0.13 -1.91 9.94 30.62 0.30 -1.60 16 19 C 0.15 3.76 4.94 30.62 0.15 3.91 16 20 F -0.18 -5.04 16.50 44.97 0.74 -4.30 16 21 F -0.18 -5.42 16.50 44.97 0.74 -4.67 16 22 H 0.07 2.00 6.08 -2.38 -0.01 1.99 16 23 H 0.06 1.28 7.10 -2.39 -0.02 1.27 16 24 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.03 0.91 7.08 -2.39 -0.02 0.89 16 26 H 0.12 2.16 7.99 -2.38 -0.02 2.15 16 27 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.10 2.53 8.01 -2.39 -0.02 2.51 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 31 H -0.01 -0.81 8.13 -2.39 -0.02 -0.83 16 32 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.04 2.23 6.77 -2.39 -0.02 2.21 16 35 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 36 H 0.06 2.37 6.34 -2.39 -0.02 2.35 16 37 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.15 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -65.26 305.18 5.05 -60.20 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.04 Total: 5.60 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 3.32 Total: -28.07 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -2.81 Total: -75.31 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 1.48 Total: -8.98 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -65.26 5.05 -60.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689340628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.769 kcal (2) G-P(sol) polarization free energy of solvation -65.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds