Wall clock time and date at job start Mon Mar 30 2020 07:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48501 * 109.46793 * 240.00118 * 3 2 1 5 5 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47239 * 120.00536 * 3 2 1 7 7 C 1.37876 * 120.00509 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00522 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99720 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.39671 * 119.99620 * 180.28012 * 13 12 11 15 15 C 1.38912 * 120.08022 * 359.44118 * 14 13 12 16 16 C 1.38098 * 119.92495 * 179.77180 * 15 14 13 17 17 C 1.38285 * 120.08000 * 0.51307 * 16 15 14 18 18 C 1.50697 * 119.93186 * 179.76361 * 17 16 15 19 19 C 1.53000 * 117.49494 * 8.72596 * 18 17 16 20 20 C 1.52997 * 117.49981 * 300.07053 * 18 17 16 21 21 C 1.38293 * 120.14390 * 359.74118 * 17 16 15 22 22 C 1.38103 * 120.07544 * 0.02562 * 21 17 16 23 23 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.46880 * 59.99987 * 9 7 2 25 25 H 1.08998 * 109.47115 * 300.00192 * 9 7 2 26 26 H 1.08995 * 109.46638 * 59.99998 * 10 9 7 27 27 H 1.09007 * 109.46700 * 300.00171 * 10 9 7 28 28 H 1.08995 * 109.47672 * 60.00331 * 11 10 9 29 29 H 1.09006 * 109.46819 * 299.99760 * 11 10 9 30 30 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 31 31 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 32 32 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 33 33 H 1.08005 * 120.03088 * 0.02562 * 15 14 13 34 34 H 1.08005 * 119.96252 * 180.25688 * 16 15 14 35 35 H 1.08996 * 115.55180 * 154.38886 * 18 17 16 36 36 H 1.09008 * 117.50296 * 0.02562 * 19 18 17 37 37 H 1.09003 * 117.50299 * 145.01479 * 19 18 17 38 38 H 1.09003 * 117.49884 * 214.97664 * 20 18 17 39 39 H 1.09009 * 117.49617 * 359.96718 * 20 18 17 40 40 H 1.08001 * 119.95818 * 180.02562 * 21 17 16 41 41 H 1.07999 * 120.03434 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0025 12 6 2.4748 -6.1500 -0.0031 13 7 1.7423 -7.4187 -0.0031 14 6 2.4408 -8.6282 0.0023 15 6 3.8299 -8.6301 -0.0041 16 6 4.5173 -9.8278 0.0060 17 6 3.8244 -11.0245 0.0117 18 6 4.5779 -12.3296 0.0174 19 6 6.0929 -12.2696 0.2224 20 6 5.5196 -12.6068 -1.1562 21 6 2.4415 -11.0263 0.0128 22 6 1.7479 -9.8322 0.0075 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5566 -0.8904 25 1 0.6249 -2.5571 0.8896 26 1 2.8727 -3.6046 0.8877 27 1 2.8715 -3.6038 -0.8923 28 1 0.8535 -5.0442 -0.8922 29 1 0.8542 -5.0454 0.8878 30 1 3.1015 -6.0926 0.8869 31 1 3.1014 -6.0917 -0.8931 32 1 0.7723 -7.4187 -0.0024 33 1 4.3717 -7.6957 -0.0128 34 1 5.5973 -9.8299 0.0052 35 1 4.0452 -13.1781 0.4465 36 1 6.5447 -11.2863 0.3536 37 1 6.5570 -13.0790 0.7861 38 1 5.6066 -13.6378 -1.4990 39 1 5.5937 -11.8453 -1.9327 40 1 1.9034 -11.9627 0.0177 41 1 0.6679 -9.8344 0.0088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690103722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:55 Heat of formation + Delta-G solvation = 23.140965 kcal Electronic energy + Delta-G solvation = -17704.440611 eV Core-core repulsion = 14969.652502 eV Total energy + Delta-G solvation = -2734.788109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80389 -37.59976 -35.84378 -33.99158 -32.23187 -30.92299 -29.69445 -27.62362 -24.82610 -23.59656 -22.70688 -22.47628 -21.12339 -20.39776 -20.04725 -17.47302 -16.27051 -16.08693 -15.85021 -15.28927 -14.85701 -14.52917 -14.43212 -13.72347 -13.53415 -13.39053 -12.87163 -12.63083 -12.52760 -11.84114 -11.77275 -11.56758 -11.38875 -11.37407 -11.00444 -10.87085 -10.66592 -10.58924 -10.52064 -10.48306 -9.73106 -9.60953 -9.34114 -9.08410 -8.93129 -8.35859 -7.25836 -6.01000 -4.03568 1.43892 1.54662 3.32534 3.36870 3.39256 3.52539 3.54705 4.02486 4.44906 4.45905 4.69679 4.80356 4.86889 4.98200 5.11146 5.25469 5.33053 5.33922 5.36543 5.43759 5.59561 5.60347 5.68253 5.74997 5.86916 5.89378 6.03308 6.05986 6.12189 6.33674 6.36401 6.43351 6.68857 6.69793 6.83159 6.86530 7.09083 7.41167 7.65577 7.79189 7.79986 7.98859 8.41401 9.03459 9.60545 11.10298 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.048371 B = 0.002534 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.724421 B =11047.505602 C =11525.063548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.129 4.129 12 C 0.122 3.878 13 N -0.745 5.745 14 C 0.220 3.780 15 C -0.196 4.196 16 C -0.070 4.070 17 C -0.123 4.123 18 C -0.103 4.103 19 C -0.182 4.182 20 C -0.176 4.176 21 C -0.065 4.065 22 C -0.199 4.199 23 H 0.261 0.739 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.399 0.601 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.407 -24.421 -0.260 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.167 4.167 12 C -0.001 4.001 13 N -0.373 5.373 14 C 0.115 3.885 15 C -0.219 4.219 16 C -0.089 4.089 17 C -0.125 4.125 18 C -0.121 4.121 19 C -0.219 4.219 20 C -0.213 4.213 21 C -0.083 4.083 22 C -0.222 4.222 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.233 0.767 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.372 -24.096 -0.264 25.200 hybrid contribution 0.012 1.010 0.012 1.010 sum 7.384 -23.086 -0.251 24.239 Atomic orbital electron populations 1.69952 1.06067 1.26718 1.50820 1.25037 0.94865 0.99293 0.95338 0.86651 0.79579 0.83104 0.78627 1.20230 1.21291 1.20235 1.21228 0.93010 0.91135 1.50637 0.92739 1.19093 0.93987 0.91336 0.97177 1.21560 0.99142 0.93304 1.00500 1.21855 0.98159 0.94510 1.02143 1.21517 0.95450 0.82387 1.00792 1.44921 1.08281 1.02813 1.81296 1.17914 0.91590 0.86129 0.92868 1.20655 0.92310 0.98523 1.10429 1.20742 0.99275 0.91429 0.97459 1.18796 0.93153 0.92741 1.07828 1.20885 0.91353 0.96714 1.03131 1.23060 0.95772 1.03158 0.99903 1.23037 1.04049 1.02367 0.91840 1.20596 0.93163 0.97112 0.97455 1.20554 0.99371 0.91117 1.11134 0.92946 0.96658 0.96650 0.93183 0.93190 0.91897 0.91908 0.92452 0.92446 0.76669 0.86036 0.86404 0.87542 0.88454 0.88787 0.88861 0.88695 0.86477 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.13 5.15 -26.73 -0.14 -2.26 16 11 C -0.13 -2.06 5.33 -26.73 -0.14 -2.20 16 12 C 0.12 1.67 4.91 -4.04 -0.02 1.65 16 13 N -0.75 -9.38 5.73 -58.63 -0.34 -9.72 16 14 C 0.22 2.79 6.65 -83.79 -0.56 2.23 16 15 C -0.20 -2.44 9.31 -39.38 -0.37 -2.81 16 16 C -0.07 -0.79 9.29 -39.62 -0.37 -1.16 16 17 C -0.12 -1.32 5.61 -104.59 -0.59 -1.91 16 18 C -0.10 -0.90 6.04 -91.77 -0.55 -1.45 16 19 C -0.18 -1.40 9.86 -26.70 -0.26 -1.66 16 20 C -0.18 -1.37 10.16 -26.70 -0.27 -1.64 16 21 C -0.06 -0.69 9.73 -39.61 -0.39 -1.07 16 22 C -0.20 -2.28 9.90 -39.38 -0.39 -2.67 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.78 7.96 -51.92 -0.41 0.37 16 31 H 0.06 0.78 7.94 -51.93 -0.41 0.37 16 32 H 0.40 4.54 8.49 -40.82 -0.35 4.19 16 33 H 0.12 1.46 6.73 -52.48 -0.35 1.11 16 34 H 0.12 1.13 6.01 -52.48 -0.32 0.81 16 35 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.75 6.17 -51.92 -0.32 0.42 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -30.26 338.26 -10.89 -41.15 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.78 Total: 1.26 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -4.59 Total: -28.16 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.40 Total: -36.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.26 -10.89 -41.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690103722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.289 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds