Wall clock time and date at job start Mon Mar 30 2020 07:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48501 * 109.46793 * 240.00118 * 3 2 1 5 5 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47239 * 120.00536 * 3 2 1 7 7 C 1.37876 * 120.00509 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00522 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99720 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.39671 * 119.99620 * 180.28012 * 13 12 11 15 15 C 1.38912 * 120.08022 * 359.44118 * 14 13 12 16 16 C 1.38098 * 119.92495 * 179.77180 * 15 14 13 17 17 C 1.38285 * 120.08000 * 0.51307 * 16 15 14 18 18 C 1.50697 * 119.93186 * 179.76361 * 17 16 15 19 19 C 1.53000 * 117.49494 * 8.72596 * 18 17 16 20 20 C 1.52997 * 117.49981 * 300.07053 * 18 17 16 21 21 C 1.38293 * 120.14390 * 359.74118 * 17 16 15 22 22 C 1.38103 * 120.07544 * 0.02562 * 21 17 16 23 23 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.46880 * 59.99987 * 9 7 2 25 25 H 1.08998 * 109.47115 * 300.00192 * 9 7 2 26 26 H 1.08995 * 109.46638 * 59.99998 * 10 9 7 27 27 H 1.09007 * 109.46700 * 300.00171 * 10 9 7 28 28 H 1.08995 * 109.47672 * 60.00331 * 11 10 9 29 29 H 1.09006 * 109.46819 * 299.99760 * 11 10 9 30 30 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 31 31 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 32 32 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 33 33 H 1.08005 * 120.03088 * 0.02562 * 15 14 13 34 34 H 1.08005 * 119.96252 * 180.25688 * 16 15 14 35 35 H 1.08996 * 115.55180 * 154.38886 * 18 17 16 36 36 H 1.09008 * 117.50296 * 0.02562 * 19 18 17 37 37 H 1.09003 * 117.50299 * 145.01479 * 19 18 17 38 38 H 1.09003 * 117.49884 * 214.97664 * 20 18 17 39 39 H 1.09009 * 117.49617 * 359.96718 * 20 18 17 40 40 H 1.08001 * 119.95818 * 180.02562 * 21 17 16 41 41 H 1.07999 * 120.03434 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0025 12 6 2.4748 -6.1500 -0.0031 13 7 1.7423 -7.4187 -0.0031 14 6 2.4408 -8.6282 0.0023 15 6 3.8299 -8.6301 -0.0041 16 6 4.5173 -9.8278 0.0060 17 6 3.8244 -11.0245 0.0117 18 6 4.5779 -12.3296 0.0174 19 6 6.0929 -12.2696 0.2224 20 6 5.5196 -12.6068 -1.1562 21 6 2.4415 -11.0263 0.0128 22 6 1.7479 -9.8322 0.0075 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5566 -0.8904 25 1 0.6249 -2.5571 0.8896 26 1 2.8727 -3.6046 0.8877 27 1 2.8715 -3.6038 -0.8923 28 1 0.8535 -5.0442 -0.8922 29 1 0.8542 -5.0454 0.8878 30 1 3.1015 -6.0926 0.8869 31 1 3.1014 -6.0917 -0.8931 32 1 0.7723 -7.4187 -0.0024 33 1 4.3717 -7.6957 -0.0128 34 1 5.5973 -9.8299 0.0052 35 1 4.0452 -13.1781 0.4465 36 1 6.5447 -11.2863 0.3536 37 1 6.5570 -13.0790 0.7861 38 1 5.6066 -13.6378 -1.4990 39 1 5.5937 -11.8453 -1.9327 40 1 1.9034 -11.9627 0.0177 41 1 0.6679 -9.8344 0.0088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690103722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:54 Heat of formation + Delta-G solvation = 8.527947 kcal Electronic energy + Delta-G solvation = -17705.074279 eV Core-core repulsion = 14969.652502 eV Total energy + Delta-G solvation = -2735.421777 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.63609 -38.44430 -37.01732 -35.57192 -33.99125 -31.78293 -31.05472 -28.97189 -26.46014 -24.44050 -23.97794 -23.14404 -22.28490 -21.81546 -21.02446 -18.57829 -18.19534 -16.90173 -16.81526 -16.60974 -16.47448 -15.59462 -15.32530 -14.87559 -14.66265 -14.46378 -14.20682 -13.82376 -13.78729 -13.45040 -13.09034 -12.93850 -12.51142 -12.38802 -12.38204 -12.26842 -12.09247 -11.84319 -11.61285 -11.41575 -11.34301 -11.14928 -11.08443 -10.55812 -10.47269 -9.79411 -8.20893 -8.17261 -6.32134 0.57287 0.68362 1.39439 1.42504 1.50444 2.39708 2.54047 2.80467 3.12080 3.28619 3.79215 3.96704 4.02623 4.09286 4.09619 4.15917 4.24429 4.38696 4.42138 4.56518 4.65772 4.69521 4.78978 4.82825 4.85201 4.95449 5.02645 5.16711 5.19570 5.21777 5.25173 5.27083 5.32017 5.47828 5.52533 5.59195 5.75433 5.85404 5.86114 6.01079 6.24384 6.45269 6.85043 6.87222 7.37210 8.90680 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.048371 B = 0.002534 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.724421 B =11047.505602 C =11525.063548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.116 4.116 12 C 0.136 3.864 13 N -0.747 5.747 14 C 0.200 3.800 15 C -0.212 4.212 16 C -0.079 4.079 17 C -0.125 4.125 18 C -0.115 4.115 19 C -0.179 4.179 20 C -0.173 4.173 21 C -0.071 4.071 22 C -0.204 4.204 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.403 0.597 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.139 0.861 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.765 -25.609 -0.234 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.154 4.154 12 C 0.012 3.988 13 N -0.376 5.376 14 C 0.096 3.904 15 C -0.235 4.235 16 C -0.098 4.098 17 C -0.127 4.127 18 C -0.133 4.133 19 C -0.216 4.216 20 C -0.210 4.210 21 C -0.089 4.089 22 C -0.227 4.227 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.239 0.761 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.157 0.843 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.743 -25.312 -0.238 26.780 hybrid contribution -0.418 1.300 0.001 1.365 sum 8.325 -24.012 -0.237 25.415 Atomic orbital electron populations 1.70089 1.07815 1.27833 1.51703 1.26016 0.95810 1.03477 0.94777 0.85496 0.78271 0.78041 0.79229 1.19121 1.20871 1.19129 1.21714 0.93615 0.92498 1.50498 0.92112 1.19025 0.94509 0.93209 0.94739 1.21354 0.98027 0.93084 1.00905 1.21643 0.98180 0.93525 1.02069 1.21238 0.94586 0.82040 1.00963 1.44771 1.08457 1.02423 1.81994 1.18090 0.91871 0.86387 0.94010 1.20800 0.92513 0.99044 1.11142 1.20947 1.00053 0.91350 0.97401 1.19109 0.93540 0.93510 1.06590 1.20965 0.91924 0.96114 1.04316 1.23145 0.94936 1.03602 0.99932 1.23080 1.03290 1.03026 0.91567 1.20910 0.93413 0.97754 0.96841 1.20789 1.00202 0.90995 1.10686 0.92783 0.99108 0.99098 0.92724 0.92732 0.92011 0.92020 0.92326 0.92313 0.76130 0.86200 0.85194 0.86349 0.88708 0.87353 0.87343 0.89499 0.84332 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 3 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.18 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.81 5.15 30.59 0.16 -3.65 16 11 C -0.12 -3.70 5.33 30.59 0.16 -3.53 16 12 C 0.14 3.62 4.91 86.38 0.42 4.05 16 13 N -0.75 -18.32 5.73 -339.40 -1.95 -20.27 16 14 C 0.20 4.93 6.65 38.22 0.25 5.19 16 15 C -0.21 -5.16 9.31 22.40 0.21 -4.95 16 16 C -0.08 -1.70 9.29 22.25 0.21 -1.49 16 17 C -0.13 -2.51 5.61 -19.84 -0.11 -2.62 16 18 C -0.12 -1.77 6.04 -11.54 -0.07 -1.84 16 19 C -0.18 -2.37 9.86 30.62 0.30 -2.07 16 20 C -0.17 -2.33 10.16 30.62 0.31 -2.02 16 21 C -0.07 -1.39 9.73 22.25 0.22 -1.17 16 22 C -0.20 -4.43 9.90 22.40 0.22 -4.21 16 23 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 24 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.06 1.55 7.96 -2.38 -0.02 1.53 16 31 H 0.06 1.55 7.94 -2.39 -0.02 1.54 16 32 H 0.40 8.93 8.49 -92.71 -0.79 8.15 16 33 H 0.12 2.84 6.73 -2.91 -0.02 2.83 16 34 H 0.13 2.36 6.01 -2.91 -0.02 2.34 16 35 H 0.12 1.52 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.29 6.17 -2.38 -0.01 1.28 16 37 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -64.66 338.26 3.70 -60.95 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.21 Total: 17.64 kcal Atomic # 6 Polarization: -50.86 SS G_CDS: 3.13 Total: -47.73 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -1.66 Total: -77.32 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -64.66 3.70 -60.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690103722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.481 kcal (2) G-P(sol) polarization free energy of solvation -64.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds