Wall clock time and date at job start Mon Mar 30 2020 07:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99860 * 2 1 4 4 H 1.48498 * 109.46880 * 269.99857 * 3 2 1 5 5 H 1.48503 * 109.47255 * 29.99338 * 3 2 1 6 6 H 1.48493 * 109.47396 * 149.99517 * 3 2 1 7 7 C 1.37883 * 120.00444 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99601 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99995 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47088 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47302 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47042 * 180.02562 * 11 10 9 13 13 C 1.39671 * 119.99941 * 179.97438 * 12 11 10 14 14 C 1.38906 * 120.07561 * 179.97438 * 13 12 11 15 15 C 1.38105 * 119.92826 * 180.02562 * 14 13 12 16 16 C 1.38292 * 120.06995 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.92237 * 179.97438 * 16 15 14 18 18 C 1.53784 * 113.61205 * 217.50057 * 17 16 15 19 19 C 1.53787 * 87.07729 * 220.01757 * 18 17 16 20 20 C 1.53773 * 87.08177 * 25.43298 * 19 18 17 21 21 C 1.38282 * 120.15149 * 0.02562 * 16 15 14 22 22 C 1.38107 * 120.07728 * 359.97438 * 21 16 15 23 23 H 0.96998 * 120.00523 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47582 * 59.99806 * 9 7 2 25 25 H 1.08997 * 109.47333 * 300.00137 * 9 7 2 26 26 H 1.09001 * 109.47343 * 59.99937 * 10 9 7 27 27 H 1.09006 * 109.47031 * 299.99999 * 10 9 7 28 28 H 1.08996 * 109.46957 * 60.00200 * 11 10 9 29 29 H 1.08992 * 109.47250 * 299.99792 * 11 10 9 30 30 H 0.96998 * 119.99739 * 0.02562 * 12 11 10 31 31 H 1.08001 * 120.03639 * 0.02562 * 14 13 12 32 32 H 1.07992 * 119.96670 * 179.72334 * 15 14 13 33 33 H 1.09005 * 112.84896 * 348.80248 * 17 16 15 34 34 H 1.08999 * 113.61668 * 334.56264 * 18 17 16 35 35 H 1.08999 * 113.61751 * 105.47051 * 18 17 16 36 36 H 1.09001 * 113.61289 * 270.88047 * 19 18 17 37 37 H 1.09002 * 113.61064 * 139.98281 * 19 18 17 38 38 H 1.09003 * 113.61683 * 220.01845 * 20 19 18 39 39 H 1.09003 * 113.69343 * 89.12628 * 20 19 18 40 40 H 1.07998 * 119.96222 * 180.02562 * 21 16 15 41 41 H 1.08000 * 120.04002 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 6 5.5517 -2.6363 0.0022 12 7 6.0401 -4.0175 0.0027 13 6 7.4133 -4.2727 0.0022 14 6 7.8781 -5.5817 0.0032 15 6 9.2365 -5.8305 0.0033 16 6 10.1337 -4.7781 0.0018 17 6 11.6154 -5.0535 0.0024 18 6 12.4251 -4.0656 0.8588 19 6 13.4851 -4.0909 -0.2550 20 6 12.3500 -4.4752 -1.2185 21 6 9.6744 -3.4738 0.0008 22 6 8.3173 -3.2179 0.0007 23 1 -0.4851 0.8400 -0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8752 -0.6803 -0.8888 26 1 3.6587 -3.1508 -0.8875 27 1 3.6580 -3.1496 0.8925 28 1 5.9150 -2.1218 0.8918 29 1 5.9150 -2.1232 -0.8881 30 1 5.4098 -4.7548 0.0026 31 1 7.1779 -6.4040 0.0040 32 1 9.5986 -6.8479 0.0086 33 1 11.8515 -6.0993 0.1991 34 1 11.9426 -3.0958 0.9804 35 1 12.7724 -4.4879 1.8018 36 1 14.2335 -4.8731 -0.1278 37 1 13.9230 -3.1146 -0.4633 38 1 12.6365 -5.2282 -1.9527 39 1 11.8461 -3.6183 -1.6657 40 1 10.3778 -2.6543 -0.0008 41 1 7.9592 -2.1990 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690151821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:57 Heat of formation + Delta-G solvation = 23.288837 kcal Electronic energy + Delta-G solvation = -18072.186254 eV Core-core repulsion = 15337.404557 eV Total energy + Delta-G solvation = -2734.781697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.04846 -38.31021 -35.88396 -33.56772 -31.77320 -30.82568 -29.50916 -26.89755 -25.78266 -24.64702 -23.46799 -22.21750 -20.84886 -20.29595 -19.27902 -17.30726 -16.80153 -16.02800 -15.80132 -15.09753 -14.95292 -14.44043 -14.18819 -13.65742 -13.37347 -13.30078 -13.05620 -12.65327 -12.62139 -12.59717 -11.99199 -11.88117 -11.80871 -11.19419 -10.96463 -10.94995 -10.64864 -10.59059 -10.31735 -10.10788 -9.91653 -9.72553 -9.56907 -9.25348 -8.83191 -8.58103 -7.16090 -6.08381 -4.07211 1.53479 1.68083 3.28143 3.35787 3.38776 3.67537 3.90223 4.41520 4.45851 4.53624 4.55764 4.86846 4.97512 5.05746 5.15207 5.25316 5.39139 5.46987 5.49884 5.52586 5.58742 5.60974 5.65342 5.72128 5.77107 5.87254 5.96330 6.01308 6.13251 6.23401 6.40099 6.42288 6.48960 6.53673 6.75401 6.81254 6.99147 7.19518 7.33332 7.52516 7.74170 7.92918 8.48574 8.95710 9.53514 11.04967 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037451 B = 0.003050 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.463170 B = 9179.341185 C = 9775.915547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.113 4.113 11 C 0.119 3.881 12 N -0.744 5.744 13 C 0.221 3.779 14 C -0.202 4.202 15 C -0.068 4.068 16 C -0.143 4.143 17 C -0.061 4.061 18 C -0.137 4.137 19 C -0.145 4.145 20 C -0.133 4.133 21 C -0.066 4.066 22 C -0.198 4.198 23 H 0.263 0.737 24 H 0.018 0.982 25 H 0.013 0.987 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.398 0.602 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.777 -9.941 -0.146 26.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.151 4.151 11 C -0.005 4.005 12 N -0.371 5.371 13 C 0.116 3.884 14 C -0.224 4.224 15 C -0.087 4.087 16 C -0.145 4.145 17 C -0.079 4.079 18 C -0.174 4.174 19 C -0.183 4.183 20 C -0.171 4.171 21 C -0.085 4.085 22 C -0.221 4.221 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.233 0.767 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.134 0.866 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 24.538 -9.596 -0.141 26.349 hybrid contribution -0.052 0.637 -0.020 0.639 sum 24.487 -8.960 -0.162 26.075 Atomic orbital electron populations 1.69910 1.06323 1.26969 1.50954 1.25042 0.94758 0.99244 0.94485 0.86761 0.80353 0.83532 0.78542 1.20248 1.21345 1.18971 1.21102 0.89345 0.94520 1.51086 0.91043 1.19496 0.97318 0.91512 0.96483 1.21663 0.90807 1.00857 1.01725 1.21604 0.96455 0.81895 1.00516 1.44975 1.02912 1.08255 1.81000 1.17930 0.84423 0.93358 0.92702 1.20552 0.95891 0.94611 1.11397 1.20683 0.92237 0.98137 0.97604 1.19353 0.94236 0.93113 1.07831 1.21333 0.90652 0.99112 0.96832 1.23056 0.96984 1.00025 0.97323 1.22843 0.96623 1.01578 0.97216 1.23006 0.96802 1.01000 0.96272 1.20670 0.94504 0.95976 0.97350 1.20671 0.92773 0.98125 1.10545 0.92674 0.96412 0.96839 0.92208 0.92174 0.92645 0.92663 0.76726 0.86542 0.86714 0.89193 0.89789 0.91657 0.90401 0.91611 0.91714 0.89966 0.86597 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 10 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 11 C 0.12 1.89 4.91 -4.04 -0.02 1.87 16 12 N -0.74 -10.55 5.73 -58.63 -0.34 -10.88 16 13 C 0.22 3.06 6.65 -83.79 -0.56 2.50 16 14 C -0.20 -2.50 9.90 -39.38 -0.39 -2.89 16 15 C -0.07 -0.77 9.70 -39.61 -0.38 -1.15 16 16 C -0.14 -1.60 5.29 -104.59 -0.55 -2.15 16 17 C -0.06 -0.54 3.98 -90.96 -0.36 -0.91 16 18 C -0.14 -1.11 7.45 -25.91 -0.19 -1.30 16 19 C -0.15 -1.04 8.08 -25.92 -0.21 -1.25 16 20 C -0.13 -1.09 7.55 -25.92 -0.20 -1.29 16 21 C -0.07 -0.79 8.60 -39.61 -0.34 -1.13 16 22 C -0.20 -2.67 9.31 -39.38 -0.37 -3.04 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 25 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 29 H 0.06 0.87 7.95 -51.93 -0.41 0.46 16 30 H 0.40 5.15 8.49 -40.82 -0.35 4.81 16 31 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.11 1.05 8.05 -52.49 -0.42 0.63 16 33 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 34 H 0.08 0.71 6.30 -51.93 -0.33 0.38 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.72 7.72 -51.93 -0.40 0.32 16 40 H 0.12 1.18 6.65 -52.49 -0.35 0.83 16 41 H 0.12 1.60 6.73 -52.49 -0.35 1.25 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -30.16 329.68 -10.28 -40.44 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.76 Total: 2.24 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -4.26 Total: -26.63 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.44 Total: -37.89 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.16 -10.28 -40.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690151821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.725 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds