Wall clock time and date at job start Mon Mar 30 2020 07:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99860 * 2 1 4 4 H 1.48498 * 109.46880 * 269.99857 * 3 2 1 5 5 H 1.48503 * 109.47255 * 29.99338 * 3 2 1 6 6 H 1.48493 * 109.47396 * 149.99517 * 3 2 1 7 7 C 1.37883 * 120.00444 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99601 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99995 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47088 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47302 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47042 * 180.02562 * 11 10 9 13 13 C 1.39671 * 119.99941 * 179.97438 * 12 11 10 14 14 C 1.38906 * 120.07561 * 179.97438 * 13 12 11 15 15 C 1.38105 * 119.92826 * 180.02562 * 14 13 12 16 16 C 1.38292 * 120.06995 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.92237 * 179.97438 * 16 15 14 18 18 C 1.53784 * 113.61205 * 217.50057 * 17 16 15 19 19 C 1.53787 * 87.07729 * 220.01757 * 18 17 16 20 20 C 1.53773 * 87.08177 * 25.43298 * 19 18 17 21 21 C 1.38282 * 120.15149 * 0.02562 * 16 15 14 22 22 C 1.38107 * 120.07728 * 359.97438 * 21 16 15 23 23 H 0.96998 * 120.00523 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47582 * 59.99806 * 9 7 2 25 25 H 1.08997 * 109.47333 * 300.00137 * 9 7 2 26 26 H 1.09001 * 109.47343 * 59.99937 * 10 9 7 27 27 H 1.09006 * 109.47031 * 299.99999 * 10 9 7 28 28 H 1.08996 * 109.46957 * 60.00200 * 11 10 9 29 29 H 1.08992 * 109.47250 * 299.99792 * 11 10 9 30 30 H 0.96998 * 119.99739 * 0.02562 * 12 11 10 31 31 H 1.08001 * 120.03639 * 0.02562 * 14 13 12 32 32 H 1.07992 * 119.96670 * 179.72334 * 15 14 13 33 33 H 1.09005 * 112.84896 * 348.80248 * 17 16 15 34 34 H 1.08999 * 113.61668 * 334.56264 * 18 17 16 35 35 H 1.08999 * 113.61751 * 105.47051 * 18 17 16 36 36 H 1.09001 * 113.61289 * 270.88047 * 19 18 17 37 37 H 1.09002 * 113.61064 * 139.98281 * 19 18 17 38 38 H 1.09003 * 113.61683 * 220.01845 * 20 19 18 39 39 H 1.09003 * 113.69343 * 89.12628 * 20 19 18 40 40 H 1.07998 * 119.96222 * 180.02562 * 21 16 15 41 41 H 1.08000 * 120.04002 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 6 5.5517 -2.6363 0.0022 12 7 6.0401 -4.0175 0.0027 13 6 7.4133 -4.2727 0.0022 14 6 7.8781 -5.5817 0.0032 15 6 9.2365 -5.8305 0.0033 16 6 10.1337 -4.7781 0.0018 17 6 11.6154 -5.0535 0.0024 18 6 12.4251 -4.0656 0.8588 19 6 13.4851 -4.0909 -0.2550 20 6 12.3500 -4.4752 -1.2185 21 6 9.6744 -3.4738 0.0008 22 6 8.3173 -3.2179 0.0007 23 1 -0.4851 0.8400 -0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8752 -0.6803 -0.8888 26 1 3.6587 -3.1508 -0.8875 27 1 3.6580 -3.1496 0.8925 28 1 5.9150 -2.1218 0.8918 29 1 5.9150 -2.1232 -0.8881 30 1 5.4098 -4.7548 0.0026 31 1 7.1779 -6.4040 0.0040 32 1 9.5986 -6.8479 0.0086 33 1 11.8515 -6.0993 0.1991 34 1 11.9426 -3.0958 0.9804 35 1 12.7724 -4.4879 1.8018 36 1 14.2335 -4.8731 -0.1278 37 1 13.9230 -3.1146 -0.4633 38 1 12.6365 -5.2282 -1.9527 39 1 11.8461 -3.6183 -1.6657 40 1 10.3778 -2.6543 -0.0008 41 1 7.9592 -2.1990 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690151821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:57 Heat of formation + Delta-G solvation = 7.789369 kcal Electronic energy + Delta-G solvation = -18072.858361 eV Core-core repulsion = 15337.404557 eV Total energy + Delta-G solvation = -2735.453804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87063 -39.15436 -37.12317 -35.31182 -33.54148 -31.75601 -30.71477 -28.39790 -26.39859 -25.63161 -24.72559 -23.41334 -21.96862 -21.77652 -19.97156 -18.95009 -18.25558 -16.84464 -16.81562 -16.36978 -16.28227 -15.82303 -15.30557 -14.77404 -14.67528 -14.48661 -14.19349 -13.87127 -13.77467 -13.61921 -13.25058 -12.99579 -12.74675 -12.67925 -12.59481 -11.90555 -11.80337 -11.68171 -11.64407 -11.34680 -11.32164 -11.27920 -10.97915 -10.77989 -10.58360 -9.76088 -8.30909 -8.17373 -6.35741 0.60291 0.74518 1.36300 1.38106 1.50046 2.35482 2.56778 2.98413 3.04585 3.81703 3.87326 3.95507 4.05487 4.13346 4.19059 4.19942 4.23086 4.39395 4.50087 4.59971 4.69909 4.78305 4.89187 4.89526 4.94416 4.96464 5.01153 5.03135 5.14589 5.16400 5.22611 5.36880 5.42961 5.48755 5.54176 5.58282 5.63003 5.66427 5.95166 6.05503 6.25277 6.48166 6.72552 6.89165 7.29090 8.85863 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037451 B = 0.003050 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.463170 B = 9179.341185 C = 9775.915547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.009 4.009 10 C -0.102 4.102 11 C 0.135 3.865 12 N -0.747 5.747 13 C 0.199 3.801 14 C -0.207 4.207 15 C -0.074 4.074 16 C -0.141 4.141 17 C -0.065 4.065 18 C -0.139 4.139 19 C -0.138 4.138 20 C -0.134 4.134 21 C -0.072 4.072 22 C -0.214 4.214 23 H 0.266 0.734 24 H 0.024 0.976 25 H 0.022 0.978 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.402 0.598 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.130 0.870 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.885 -9.844 -0.143 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.047 4.047 10 C -0.140 4.140 11 C 0.011 3.989 12 N -0.376 5.376 13 C 0.096 3.904 14 C -0.229 4.229 15 C -0.092 4.092 16 C -0.143 4.143 17 C -0.083 4.083 18 C -0.176 4.176 19 C -0.175 4.175 20 C -0.172 4.172 21 C -0.091 4.091 22 C -0.237 4.237 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.237 0.763 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.147 0.853 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 27.680 -9.528 -0.139 29.274 hybrid contribution -1.013 0.485 -0.023 1.123 sum 26.667 -9.043 -0.162 28.159 Atomic orbital electron populations 1.70070 1.08391 1.28237 1.52591 1.26070 0.95660 1.03733 0.94057 0.85616 0.79562 0.77960 0.79269 1.19096 1.21075 1.16681 1.21486 0.92153 0.93117 1.50541 0.95068 1.19444 0.93865 0.94441 0.96931 1.21449 0.93140 0.98061 1.01320 1.21270 0.93811 0.83118 1.00737 1.44791 1.03389 1.07500 1.81968 1.18110 0.84051 0.94186 0.94077 1.20779 0.96775 0.94413 1.10952 1.21013 0.91846 0.99440 0.96911 1.19687 0.95622 0.92799 1.06224 1.21445 0.89155 1.00026 0.97649 1.23064 0.97171 0.99538 0.97812 1.22829 0.96369 1.02248 0.96043 1.22996 0.97069 1.00841 0.96288 1.20871 0.94156 0.96948 0.97080 1.20809 0.93583 0.98007 1.11327 0.92471 0.95813 0.95920 0.92664 0.92668 0.92489 0.92436 0.76259 0.85390 0.84442 0.88072 0.90310 0.91140 0.89245 0.91152 0.91098 0.90793 0.85264 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 2 C 0.00 0.08 5.47 84.66 0.46 0.55 16 3 Si 0.95 44.01 27.47 68.60 1.88 45.90 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 7 C -0.53 -30.86 9.66 25.60 0.25 -30.61 16 8 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 9 C -0.01 -0.41 4.04 29.84 0.12 -0.28 16 10 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 11 C 0.14 4.14 4.91 86.38 0.42 4.56 16 12 N -0.75 -20.60 5.73 -339.42 -1.95 -22.55 16 13 C 0.20 5.32 6.65 38.21 0.25 5.58 16 14 C -0.21 -4.81 9.90 22.40 0.22 -4.59 16 15 C -0.07 -1.51 9.70 22.25 0.22 -1.29 16 16 C -0.14 -2.87 5.29 -19.84 -0.10 -2.97 16 17 C -0.06 -0.99 3.98 -11.01 -0.04 -1.04 16 18 C -0.14 -1.93 7.45 31.12 0.23 -1.70 16 19 C -0.14 -1.61 8.08 31.12 0.25 -1.36 16 20 C -0.13 -1.89 7.55 31.12 0.23 -1.66 16 21 C -0.07 -1.60 8.60 22.25 0.19 -1.41 16 22 C -0.21 -5.57 9.31 22.40 0.21 -5.36 16 23 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 24 H 0.02 1.06 7.20 -2.38 -0.02 1.04 16 25 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 2.09 8.14 -2.38 -0.02 2.08 16 28 H 0.06 1.73 7.95 -2.39 -0.02 1.71 16 29 H 0.06 1.74 7.95 -2.39 -0.02 1.72 16 30 H 0.40 10.19 8.49 -92.71 -0.79 9.40 16 31 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.14 2.13 8.05 -2.91 -0.02 2.11 16 33 H 0.10 1.34 8.09 -2.38 -0.02 1.32 16 34 H 0.08 1.18 6.30 -2.39 -0.02 1.16 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.16 7.72 -2.39 -0.02 1.15 16 40 H 0.13 2.43 6.65 -2.91 -0.02 2.41 16 41 H 0.12 3.02 6.73 -2.91 -0.02 3.00 16 Total: -1.00 -65.21 329.68 3.47 -61.73 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.16 Total: 19.93 kcal Atomic # 6 Polarization: -48.32 SS G_CDS: 3.08 Total: -45.24 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -1.65 Total: -82.32 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.90 kcal Total: -65.21 3.47 -61.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690151821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.524 kcal (2) G-P(sol) polarization free energy of solvation -65.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds