Wall clock time and date at job start Mon Mar 30 2020 06:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36922 * 120.30901 * 2 1 4 4 C 1.40309 * 118.49379 * 180.24146 * 3 2 1 5 5 C 1.43195 * 120.48565 * 179.72355 * 4 3 2 6 6 N 4.79111 * 136.33109 * 359.71809 * 2 1 3 7 7 C 1.39622 * 119.03371 * 359.74780 * 4 3 2 8 8 N 1.31688 * 120.50928 * 359.97438 * 7 4 3 9 9 C 1.32596 * 121.63999 * 0.02562 * 8 7 4 10 10 N 1.38588 * 119.52948 * 179.97438 * 9 8 7 11 11 C 1.46903 * 111.00074 * 301.31548 * 10 9 8 12 12 C 1.50699 * 109.47314 * 298.35599 * 11 10 9 13 13 H 1.08003 * 120.00058 * 3.77399 * 12 11 10 14 14 C 1.37872 * 119.99893 * 183.78663 * 12 11 10 15 15 N 1.31514 * 120.00379 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 120.00061 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46875 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47337 * 119.99592 * 16 14 12 19 19 H 1.48501 * 109.46974 * 239.99584 * 16 14 12 20 20 C 1.46899 * 111.00363 * 65.27415 * 10 9 8 21 21 C 1.52996 * 109.47075 * 174.40185 * 20 10 9 22 22 C 1.52998 * 109.46934 * 54.40100 * 20 10 9 23 23 H 1.08996 * 109.47267 * 274.64852 * 1 2 3 24 24 H 1.08998 * 109.46961 * 34.65696 * 1 2 3 25 25 H 1.09005 * 109.47251 * 154.65218 * 1 2 3 26 26 H 1.08001 * 120.75329 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.75165 * 180.02562 * 7 4 3 28 28 H 1.09001 * 109.46596 * 58.35061 * 11 10 9 29 29 H 1.08996 * 109.47381 * 178.34722 * 11 10 9 30 30 H 0.96998 * 120.00721 * 180.02562 * 15 14 12 31 31 H 1.09003 * 109.46773 * 294.39998 * 20 10 9 32 32 H 1.08995 * 109.47665 * 305.03717 * 21 20 10 33 33 H 1.09000 * 109.47217 * 65.04286 * 21 20 10 34 34 H 1.09004 * 109.47117 * 185.04064 * 21 20 10 35 35 H 1.09001 * 109.46875 * 180.35119 * 22 20 10 36 36 H 1.09004 * 109.47109 * 300.34801 * 22 20 10 37 37 H 1.08994 * 109.47280 * 60.35678 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1821 0.0000 4 6 3.6004 1.1376 -0.0052 5 6 4.3655 2.3480 -0.0114 6 7 4.9726 3.3082 -0.0163 7 6 4.2390 -0.1040 -0.0048 8 7 3.5359 -1.2174 0.0009 9 6 2.2100 -1.2028 0.0059 10 7 1.5137 -2.4010 0.0113 11 6 1.8611 -3.2170 -1.1599 12 6 1.4782 -2.4798 -2.4172 13 1 1.0789 -1.4782 -2.3556 14 6 1.6376 -3.0841 -3.6462 15 7 2.1241 -4.3036 -3.7213 16 14 1.1624 -2.1705 -5.2048 17 1 0.6434 -0.8248 -4.8511 18 1 2.3549 -2.0278 -6.0781 19 1 0.1105 -2.9329 -5.9242 20 6 1.7498 -3.1417 1.2577 21 6 0.8603 -4.3861 1.2878 22 6 1.4163 -2.2472 2.4534 23 1 -0.3633 0.0833 1.0242 24 1 -0.3633 0.8453 -0.5844 25 1 -0.3634 -0.9288 -0.4400 26 1 1.6754 2.1272 -0.0004 27 1 5.3179 -0.1517 -0.0083 28 1 2.9340 -3.4089 -1.1636 29 1 1.3229 -4.1638 -1.1156 30 1 2.2365 -4.7286 -4.5860 31 1 2.7965 -3.4418 1.3092 32 1 -0.1799 -4.0928 1.1464 33 1 1.1582 -5.0651 0.4889 34 1 0.9689 -4.8871 2.2498 35 1 1.5974 -2.7947 3.3783 36 1 2.0457 -1.3577 2.4284 37 1 0.3681 -1.9522 2.4052 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690378132.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:17 Heat of formation + Delta-G solvation = 68.628138 kcal Electronic energy + Delta-G solvation = -19485.206410 eV Core-core repulsion = 16648.850430 eV Total energy + Delta-G solvation = -2836.355981 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49085 -37.49005 -36.16504 -33.42238 -33.02345 -32.10272 -30.24977 -27.54962 -26.68510 -26.16743 -23.65923 -22.50680 -21.90397 -19.71305 -18.17680 -16.86646 -16.76589 -15.79767 -15.35282 -14.45265 -14.26664 -13.86111 -13.66137 -13.55540 -13.16491 -12.95773 -12.71655 -12.49334 -12.18869 -12.17629 -12.10383 -11.79151 -11.63987 -11.58105 -11.33067 -10.97652 -10.74217 -10.66791 -10.38304 -9.96403 -9.44339 -9.31953 -9.26804 -8.51813 -8.31278 -7.69361 -6.09934 -4.10934 0.87619 1.55329 2.73128 3.13584 3.26778 3.34842 3.38067 3.98172 4.12621 4.26628 4.44829 4.79766 4.96196 5.26835 5.27857 5.33695 5.42249 5.44509 5.68317 5.81116 5.88665 5.97738 6.01222 6.15098 6.15472 6.22026 6.23187 6.34545 6.57375 6.61910 6.70786 6.85849 7.16370 7.35021 7.54814 7.64476 7.97862 8.07645 8.27764 8.36264 8.94257 9.52726 11.00914 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.008776 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.591995 B = 3189.597948 C = 4390.397194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.114 4.114 3 C -0.032 4.032 4 C -0.116 4.116 5 C 0.273 3.727 6 N -0.437 5.437 7 C 0.162 3.838 8 N -0.504 5.504 9 C 0.385 3.615 10 N -0.491 5.491 11 C 0.193 3.807 12 C -0.512 4.512 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.283 1.283 20 C 0.082 3.918 21 C -0.141 4.141 22 C -0.145 4.145 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.137 0.863 27 H 0.156 0.844 28 H 0.009 0.991 29 H 0.047 0.953 30 H 0.262 0.738 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 4.921 10.306 11.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.118 4.118 3 C -0.060 4.060 4 C -0.122 4.122 5 C -0.042 4.042 6 N -0.112 5.112 7 C 0.000 4.000 8 N -0.214 5.214 9 C 0.156 3.844 10 N -0.216 5.216 11 C 0.070 3.930 12 C -0.550 4.550 13 H 0.080 0.920 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.209 1.209 20 C -0.025 4.025 21 C -0.199 4.199 22 C -0.203 4.203 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.115 0.885 26 H 0.155 0.845 27 H 0.173 0.827 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.681 5.516 10.141 11.666 hybrid contribution 0.107 0.660 -1.123 1.307 sum -1.574 6.176 9.018 11.043 Atomic orbital electron populations 1.20657 0.89304 1.04377 1.01528 1.20261 0.98363 0.91538 1.01639 1.21070 0.91475 0.98816 0.94644 1.16943 0.92708 0.88691 1.13866 1.25519 0.93144 0.92643 0.92913 1.81210 1.08951 1.10780 1.10306 1.22641 0.99932 0.85686 0.91778 1.68031 1.09274 1.30337 1.13804 1.19957 0.86054 0.92467 0.85962 1.60507 1.52903 1.03669 1.04563 1.19940 0.95914 0.92721 0.84379 1.21139 1.42362 1.01316 0.90209 0.92034 1.24900 0.95220 0.94896 0.99051 1.69944 1.45155 1.13104 1.24989 0.86522 0.78189 0.79994 0.83262 1.19647 1.21096 1.20881 1.21564 0.98490 0.93784 0.88706 1.21831 1.00359 0.96570 1.01098 1.21903 1.02015 0.99219 0.97128 0.91797 0.92328 0.88529 0.84501 0.82692 0.97268 0.93507 0.92863 0.93444 0.91855 0.91751 0.92994 0.92586 0.93601 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 9.82 36.01 0.35 -1.05 16 2 C -0.11 -1.81 5.60 -104.70 -0.59 -2.40 16 3 C -0.03 -0.45 9.52 -39.28 -0.37 -0.82 16 4 C -0.12 -1.66 5.75 -106.68 -0.61 -2.28 16 5 C 0.27 3.95 15.37 -22.48 -0.35 3.60 16 6 N -0.44 -6.96 18.54 41.84 0.78 -6.18 16 7 C 0.16 2.52 10.92 -17.10 -0.19 2.33 16 8 N -0.50 -9.42 9.55 -12.11 -0.12 -9.53 16 9 C 0.38 7.10 2.60 -155.19 -0.40 6.70 16 10 N -0.49 -9.51 3.26 -167.02 -0.54 -10.06 16 11 C 0.19 4.67 4.40 -4.97 -0.02 4.65 16 12 C -0.51 -13.50 8.70 -34.44 -0.30 -13.80 16 13 H 0.06 1.61 7.19 -52.48 -0.38 1.23 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 16 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.08 1.35 2.53 -67.72 -0.17 1.18 16 21 C -0.14 -2.13 8.87 37.16 0.33 -1.80 16 22 C -0.14 -1.95 8.96 37.16 0.33 -1.62 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.72 8.12 -51.93 -0.42 0.29 16 25 H 0.10 1.58 7.33 -51.93 -0.38 1.20 16 26 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 28 H 0.01 0.25 7.75 -51.93 -0.40 -0.15 16 29 H 0.05 1.19 6.18 -51.93 -0.32 0.87 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.05 0.85 8.06 -51.93 -0.42 0.43 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.09 6.59 -51.93 -0.34 0.75 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.04 0.64 7.04 -51.93 -0.37 0.28 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -29.37 317.37 -6.59 -35.96 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.12 Total: -2.50 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.08 Total: -3.73 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.85 Total: -50.62 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.37 -6.59 -35.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690378132.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.587 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds