Wall clock time and date at job start Mon Mar 30 2020 06:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36922 * 120.30901 * 2 1 4 4 C 1.40309 * 118.49379 * 180.24146 * 3 2 1 5 5 C 1.43195 * 120.48565 * 179.72355 * 4 3 2 6 6 N 4.79111 * 136.33109 * 359.71809 * 2 1 3 7 7 C 1.39622 * 119.03371 * 359.74780 * 4 3 2 8 8 N 1.31688 * 120.50928 * 359.97438 * 7 4 3 9 9 C 1.32596 * 121.63999 * 0.02562 * 8 7 4 10 10 N 1.38588 * 119.52948 * 179.97438 * 9 8 7 11 11 C 1.46903 * 111.00074 * 301.31548 * 10 9 8 12 12 C 1.50699 * 109.47314 * 298.35599 * 11 10 9 13 13 H 1.08003 * 120.00058 * 3.77399 * 12 11 10 14 14 C 1.37872 * 119.99893 * 183.78663 * 12 11 10 15 15 N 1.31514 * 120.00379 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 120.00061 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46875 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47337 * 119.99592 * 16 14 12 19 19 H 1.48501 * 109.46974 * 239.99584 * 16 14 12 20 20 C 1.46899 * 111.00363 * 65.27415 * 10 9 8 21 21 C 1.52996 * 109.47075 * 174.40185 * 20 10 9 22 22 C 1.52998 * 109.46934 * 54.40100 * 20 10 9 23 23 H 1.08996 * 109.47267 * 274.64852 * 1 2 3 24 24 H 1.08998 * 109.46961 * 34.65696 * 1 2 3 25 25 H 1.09005 * 109.47251 * 154.65218 * 1 2 3 26 26 H 1.08001 * 120.75329 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.75165 * 180.02562 * 7 4 3 28 28 H 1.09001 * 109.46596 * 58.35061 * 11 10 9 29 29 H 1.08996 * 109.47381 * 178.34722 * 11 10 9 30 30 H 0.96998 * 120.00721 * 180.02562 * 15 14 12 31 31 H 1.09003 * 109.46773 * 294.39998 * 20 10 9 32 32 H 1.08995 * 109.47665 * 305.03717 * 21 20 10 33 33 H 1.09000 * 109.47217 * 65.04286 * 21 20 10 34 34 H 1.09004 * 109.47117 * 185.04064 * 21 20 10 35 35 H 1.09001 * 109.46875 * 180.35119 * 22 20 10 36 36 H 1.09004 * 109.47109 * 300.34801 * 22 20 10 37 37 H 1.08994 * 109.47280 * 60.35678 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1821 0.0000 4 6 3.6004 1.1376 -0.0052 5 6 4.3655 2.3480 -0.0114 6 7 4.9726 3.3082 -0.0163 7 6 4.2390 -0.1040 -0.0048 8 7 3.5359 -1.2174 0.0009 9 6 2.2100 -1.2028 0.0059 10 7 1.5137 -2.4010 0.0113 11 6 1.8611 -3.2170 -1.1599 12 6 1.4782 -2.4798 -2.4172 13 1 1.0789 -1.4782 -2.3556 14 6 1.6376 -3.0841 -3.6462 15 7 2.1241 -4.3036 -3.7213 16 14 1.1624 -2.1705 -5.2048 17 1 0.6434 -0.8248 -4.8511 18 1 2.3549 -2.0278 -6.0781 19 1 0.1105 -2.9329 -5.9242 20 6 1.7498 -3.1417 1.2577 21 6 0.8603 -4.3861 1.2878 22 6 1.4163 -2.2472 2.4534 23 1 -0.3633 0.0833 1.0242 24 1 -0.3633 0.8453 -0.5844 25 1 -0.3634 -0.9288 -0.4400 26 1 1.6754 2.1272 -0.0004 27 1 5.3179 -0.1517 -0.0083 28 1 2.9340 -3.4089 -1.1636 29 1 1.3229 -4.1638 -1.1156 30 1 2.2365 -4.7286 -4.5860 31 1 2.7965 -3.4418 1.3092 32 1 -0.1799 -4.0928 1.1464 33 1 1.1582 -5.0651 0.4889 34 1 0.9689 -4.8871 2.2498 35 1 1.5974 -2.7947 3.3783 36 1 2.0457 -1.3577 2.4284 37 1 0.3681 -1.9522 2.4052 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690378132.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:17 Heat of formation + Delta-G solvation = 51.826284 kcal Electronic energy + Delta-G solvation = -19485.934993 eV Core-core repulsion = 16648.850430 eV Total energy + Delta-G solvation = -2837.084564 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.79022 -38.84805 -37.42534 -34.94782 -34.63501 -33.46206 -31.73154 -29.03066 -27.88745 -27.69678 -25.12048 -23.76319 -23.55626 -21.05590 -19.37304 -18.62591 -18.10428 -17.41654 -16.93050 -16.13894 -15.56159 -15.16088 -15.05869 -14.75168 -14.42440 -14.17749 -14.11212 -13.91447 -13.63759 -13.49483 -13.35215 -13.24552 -12.99118 -12.84597 -12.76301 -12.53119 -12.40925 -12.12118 -11.96436 -11.60021 -11.25778 -10.68191 -10.64053 -10.50093 -9.57790 -9.27835 -8.18171 -6.25449 -0.36871 0.36637 1.39545 1.41261 1.52444 1.55275 1.92090 2.39853 2.74694 2.89476 2.99741 3.18211 3.58261 3.84125 4.07000 4.12011 4.21616 4.24624 4.50196 4.59390 4.74418 4.87678 4.92931 4.97406 5.00556 5.02117 5.07559 5.15719 5.29371 5.36545 5.41323 5.43371 5.49847 5.65380 5.73909 6.04199 6.35720 6.38528 6.63999 6.88918 7.03114 7.42614 8.93509 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.008776 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.591995 B = 3189.597948 C = 4390.397194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.120 4.120 3 C -0.019 4.019 4 C -0.103 4.103 5 C 0.294 3.706 6 N -0.456 5.456 7 C 0.154 3.846 8 N -0.539 5.539 9 C 0.354 3.646 10 N -0.485 5.485 11 C 0.214 3.786 12 C -0.514 4.514 13 H 0.064 0.936 14 C 0.007 3.993 15 N -0.931 5.931 16 Si 0.955 3.045 17 H -0.260 1.260 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.076 3.924 21 C -0.135 4.135 22 C -0.132 4.132 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.175 0.825 27 H 0.175 0.825 28 H -0.031 1.031 29 H 0.025 0.975 30 H 0.262 0.738 31 H 0.024 0.976 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.700 7.256 11.083 13.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.047 4.047 4 C -0.109 4.109 5 C -0.021 4.021 6 N -0.132 5.132 7 C -0.009 4.009 8 N -0.250 5.250 9 C 0.126 3.874 10 N -0.210 5.210 11 C 0.089 3.911 12 C -0.552 4.552 13 H 0.082 0.918 14 C -0.191 4.191 15 N -0.572 5.572 16 Si 0.780 3.220 17 H -0.184 1.184 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.031 4.031 21 C -0.192 4.192 22 C -0.189 4.189 23 H 0.108 0.892 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.192 0.808 27 H 0.192 0.808 28 H -0.013 1.013 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.814 7.869 10.943 13.769 hybrid contribution 0.520 -0.033 -1.284 1.386 sum -2.294 7.836 9.659 12.648 Atomic orbital electron populations 1.20663 0.87809 1.03717 1.03283 1.20486 0.99482 0.91053 1.01304 1.21432 0.91133 0.99602 0.92488 1.16911 0.93106 0.88067 1.12843 1.25284 0.92512 0.92112 0.92210 1.81250 1.09522 1.11519 1.10933 1.22961 1.00829 0.85491 0.91581 1.67943 1.09939 1.32105 1.15021 1.20113 0.86347 0.92728 0.88233 1.60420 1.52956 1.03683 1.03901 1.19437 0.92821 0.92552 0.86285 1.21434 1.41366 1.01352 0.91084 0.91809 1.25741 0.95388 0.95646 1.02318 1.70073 1.46745 1.14717 1.25664 0.85541 0.77762 0.79279 0.79374 1.18400 1.21325 1.20262 1.21720 0.97510 0.94896 0.89003 1.21782 1.00065 0.95671 1.01682 1.21792 1.02445 0.98437 0.96237 0.89238 0.90233 0.91399 0.80781 0.80826 1.01324 0.95666 0.92884 0.95782 0.91472 0.94717 0.89910 0.90267 0.94228 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 9.82 71.24 0.70 -1.74 16 2 C -0.12 -3.54 5.60 -19.91 -0.11 -3.65 16 3 C -0.02 -0.47 9.52 22.46 0.21 -0.25 16 4 C -0.10 -2.72 5.75 -21.20 -0.12 -2.84 16 5 C 0.29 7.72 15.37 88.33 1.36 9.07 16 6 N -0.46 -13.46 18.54 19.00 0.35 -13.11 16 7 C 0.15 4.63 10.92 85.05 0.93 5.56 16 8 N -0.54 -20.32 9.55 -192.23 -1.83 -22.16 16 9 C 0.35 12.98 2.60 133.19 0.35 13.32 16 10 N -0.49 -19.15 3.26 -682.32 -2.22 -21.37 16 11 C 0.21 10.82 4.40 85.56 0.38 11.20 16 12 C -0.51 -27.66 8.70 25.60 0.22 -27.44 16 13 H 0.06 3.33 7.19 -2.91 -0.02 3.31 16 14 C 0.01 0.41 5.46 84.65 0.46 0.87 16 15 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 16 Si 0.95 43.48 29.54 68.60 2.03 45.50 16 17 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 C 0.08 2.52 2.53 44.91 0.11 2.64 16 21 C -0.13 -4.09 8.87 71.98 0.64 -3.45 16 22 C -0.13 -3.31 8.96 71.98 0.65 -2.67 16 23 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 25 H 0.07 2.13 7.33 -2.38 -0.02 2.11 16 26 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 27 H 0.17 4.34 8.06 -2.91 -0.02 4.31 16 28 H -0.03 -1.79 7.75 -2.39 -0.02 -1.81 16 29 H 0.03 1.37 6.18 -2.39 -0.01 1.36 16 30 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.02 0.91 8.06 -2.39 -0.02 0.89 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.03 1.24 6.59 -2.39 -0.02 1.22 16 34 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.05 7.04 -2.38 -0.02 1.03 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -65.41 317.37 5.44 -59.97 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.06 Total: 5.34 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 5.77 Total: 0.62 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -3.42 Total: -111.44 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -65.41 5.44 -59.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690378132.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.795 kcal (2) G-P(sol) polarization free energy of solvation -65.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds