Wall clock time and date at job start Mon Mar 30 2020 06:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00423 * 2 1 4 4 H 1.48498 * 109.47050 * 240.00070 * 3 2 1 5 5 H 1.48495 * 109.46854 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47164 * 119.99943 * 3 2 1 7 7 C 1.37880 * 119.99414 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.52258 * 180.02562 * 9 7 2 11 11 C 1.53049 * 109.27818 * 182.43980 * 10 9 7 12 12 N 1.46850 * 109.52014 * 59.17579 * 11 10 9 13 13 C 1.46905 * 110.99528 * 174.16115 * 12 11 10 14 14 C 1.53001 * 109.46850 * 169.99984 * 13 12 11 15 15 C 1.53000 * 109.46794 * 179.97438 * 14 13 12 16 16 H 1.08999 * 115.54966 * 29.33587 * 15 14 13 17 17 C 1.53069 * 117.51168 * 243.60534 * 15 14 13 18 18 C 1.52995 * 59.98632 * 252.52712 * 17 15 14 19 19 F 1.39905 * 117.50066 * 252.50021 * 18 17 15 20 20 F 1.39897 * 117.49662 * 107.50453 * 18 17 15 21 21 C 1.46844 * 111.20047 * 298.26022 * 12 11 10 22 22 C 1.53031 * 109.52661 * 61.74331 * 21 12 11 23 23 H 0.97003 * 119.99380 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.57418 * 300.15413 * 9 7 2 25 25 H 1.09001 * 109.50697 * 62.50139 * 10 9 7 26 26 H 1.08999 * 109.53474 * 302.39679 * 10 9 7 27 27 H 1.08996 * 109.45867 * 299.16276 * 11 10 9 28 28 H 1.08999 * 109.46059 * 179.19232 * 11 10 9 29 29 H 1.09002 * 109.47078 * 50.00284 * 13 12 11 30 30 H 1.09000 * 109.46952 * 290.00418 * 13 12 11 31 31 H 1.09002 * 109.47035 * 60.00274 * 14 13 12 32 32 H 1.08997 * 109.46845 * 300.00278 * 14 13 12 33 33 H 1.09007 * 117.51170 * 145.04530 * 17 15 14 34 34 H 1.08997 * 117.49718 * 0.02562 * 17 15 14 35 35 H 1.08997 * 109.45986 * 181.76161 * 21 12 11 36 36 H 1.09002 * 109.46304 * 301.72832 * 21 12 11 37 37 H 1.08997 * 109.50826 * 180.88437 * 22 21 12 38 38 H 1.08996 * 109.53581 * 60.77840 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2448 -3.6639 0.0018 11 6 1.4749 -4.9852 -0.0597 12 7 0.6549 -5.0191 -1.2775 13 6 0.0088 -6.3283 -1.4407 14 6 -1.0229 -6.2508 -2.5679 15 6 -1.6954 -7.6145 -2.7382 16 1 -1.7606 -8.2225 -1.8359 17 6 -1.4899 -8.3430 -4.0687 18 6 -2.8459 -7.7142 -3.7419 19 9 -3.9009 -8.5790 -3.4314 20 9 -3.2023 -6.5517 -4.4337 21 6 -0.3387 -3.9379 -1.2790 22 6 0.3770 -2.5855 -1.2539 23 1 -0.4849 0.8401 0.0004 24 1 0.6211 -2.5572 0.8884 25 1 2.8412 -3.6324 0.9136 26 1 2.9007 -3.5843 -0.8651 27 1 0.8300 -5.0707 0.8148 28 1 2.1802 -5.8162 -0.0734 29 1 -0.4886 -6.6064 -0.5114 30 1 0.7616 -7.0768 -1.6879 31 1 -0.5256 -5.9728 -3.4971 32 1 -1.7757 -5.5023 -2.3205 33 1 -1.4197 -9.4304 -4.0417 34 1 -0.8752 -7.8507 -4.8222 35 1 -0.9507 -4.0084 -2.1782 36 1 -0.9752 -4.0284 -0.3987 37 1 -0.3610 -1.7835 -1.2391 38 1 1.0029 -2.4879 -2.1408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691203998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:31 Heat of formation + Delta-G solvation = -79.921685 kcal Electronic energy + Delta-G solvation = -19561.280044 eV Core-core repulsion = 16267.793274 eV Total energy + Delta-G solvation = -3293.486771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.78046 -47.46083 -38.61109 -36.92507 -34.08902 -31.82252 -29.85362 -29.19603 -25.73158 -23.35342 -22.68140 -22.24382 -21.29704 -20.32226 -18.59399 -17.79092 -16.91274 -16.34396 -16.06250 -15.06130 -14.97501 -14.41724 -14.23163 -14.10853 -13.96609 -13.67586 -13.40872 -13.12383 -12.64814 -12.61211 -12.35717 -11.84071 -11.56982 -11.46455 -11.24409 -10.90927 -10.72059 -10.51649 -10.43780 -10.19037 -9.99598 -9.92690 -9.38757 -8.93750 -8.67022 -8.26740 -7.74898 -5.94887 -4.00246 2.86325 2.91170 3.34497 3.39102 3.41813 3.94709 4.12792 4.42906 4.47047 4.53284 4.92883 5.19297 5.23382 5.30644 5.36117 5.51479 5.54151 5.68941 5.76664 5.88100 6.02482 6.12740 6.17403 6.25508 6.32957 6.63390 6.64554 6.87133 7.09512 7.17913 7.45671 7.62698 7.69811 7.84888 8.07254 8.18283 8.50811 9.03201 9.64030 11.11317 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.035757 B = 0.003962 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.879882 B = 7066.129475 C = 7580.694695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.536 5.536 13 C 0.060 3.940 14 C -0.098 4.098 15 C -0.140 4.140 16 H 0.129 0.871 17 C -0.173 4.173 18 C 0.188 3.812 19 F -0.165 7.165 20 F -0.158 7.158 21 C 0.050 3.950 22 C -0.105 4.105 23 H 0.260 0.740 24 H 0.020 0.980 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.024 0.976 28 H 0.057 0.943 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.022 0.978 37 H 0.092 0.908 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 -16.245 -5.812 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.261 5.261 13 C -0.069 4.069 14 C -0.135 4.135 15 C -0.160 4.160 16 H 0.147 0.853 17 C -0.211 4.211 18 C 0.152 3.848 19 F -0.146 7.146 20 F -0.139 7.139 21 C -0.078 4.078 22 C -0.143 4.143 23 H 0.069 0.931 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.110 0.890 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.172 -16.021 -6.216 17.475 hybrid contribution -0.412 0.745 0.625 1.056 sum -3.583 -15.276 -5.591 16.657 Atomic orbital electron populations 1.69868 1.05873 1.26399 1.51011 1.24965 0.94831 0.98980 0.95201 0.86695 0.79624 0.83329 0.78555 1.20310 1.21377 1.20391 1.21178 0.92839 0.90703 1.50237 0.92822 1.18683 0.92716 0.91734 0.93974 1.21680 0.98717 0.93751 1.00279 1.22113 0.95787 0.99296 0.89469 1.62081 1.23682 1.01934 1.38405 1.22030 0.95723 0.92955 0.96160 1.21406 0.98307 0.92915 1.00913 1.23771 0.96059 1.00700 0.95422 0.85324 1.24465 0.94516 1.02390 0.99721 1.20133 0.81084 0.81509 1.02111 1.93013 1.59790 1.68602 1.93192 1.93033 1.93200 1.47779 1.79870 1.22408 0.93345 0.93137 0.98864 1.21664 1.00185 0.93055 0.99372 0.93055 0.96205 0.93210 0.92476 0.95812 0.92475 0.95362 0.91086 0.89926 0.89904 0.86212 0.85840 0.91978 0.96010 0.88999 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 11.38 55.43 0.63 -24.90 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.10 8.56 -34.44 -0.29 -14.40 16 8 H 0.05 1.46 7.75 -52.48 -0.41 1.06 16 9 C 0.05 1.18 2.16 -91.65 -0.20 0.98 16 10 C -0.11 -2.23 5.32 -26.64 -0.14 -2.37 16 11 C 0.06 1.08 5.43 -3.83 -0.02 1.06 16 12 N -0.54 -9.27 4.81 -234.66 -1.13 -10.40 16 13 C 0.06 0.79 5.23 -3.82 -0.02 0.77 16 14 C -0.10 -1.17 4.39 -26.73 -0.12 -1.29 16 15 C -0.14 -1.34 5.72 -90.58 -0.52 -1.86 16 16 H 0.13 1.07 8.07 -51.93 -0.42 0.65 16 17 C -0.17 -1.38 10.15 -26.70 -0.27 -1.65 16 18 C 0.19 2.05 5.20 -26.73 -0.14 1.91 16 19 F -0.17 -1.96 17.60 2.25 0.04 -1.92 16 20 F -0.16 -2.06 17.14 2.25 0.04 -2.02 16 21 C 0.05 0.96 4.85 -3.84 -0.02 0.94 16 22 C -0.10 -2.47 5.12 -26.65 -0.14 -2.60 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 29 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.01 7.88 -51.93 -0.41 0.60 16 32 H 0.08 1.11 6.21 -51.93 -0.32 0.79 16 33 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.12 0.90 8.03 -51.93 -0.42 0.48 16 35 H 0.06 1.10 5.81 -51.93 -0.30 0.80 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.09 2.42 6.18 -51.93 -0.32 2.10 16 38 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 308.79 15.07 4.65 4.65 Total: -1.00 -28.77 308.79 -8.71 -37.48 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.95 Total: -2.35 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -1.97 Total: -16.90 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.50 Total: -35.29 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.08 Total: -3.94 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.77 -8.71 -37.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691203998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.439 kcal (2) G-P(sol) polarization free energy of solvation -28.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds