Wall clock time and date at job start Mon Mar 30 2020 06:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00423 * 2 1 4 4 H 1.48498 * 109.47050 * 240.00070 * 3 2 1 5 5 H 1.48495 * 109.46854 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47164 * 119.99943 * 3 2 1 7 7 C 1.37880 * 119.99414 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.52258 * 180.02562 * 9 7 2 11 11 C 1.53049 * 109.27818 * 182.43980 * 10 9 7 12 12 N 1.46850 * 109.52014 * 59.17579 * 11 10 9 13 13 C 1.46905 * 110.99528 * 174.16115 * 12 11 10 14 14 C 1.53001 * 109.46850 * 169.99984 * 13 12 11 15 15 C 1.53000 * 109.46794 * 179.97438 * 14 13 12 16 16 H 1.08999 * 115.54966 * 29.33587 * 15 14 13 17 17 C 1.53069 * 117.51168 * 243.60534 * 15 14 13 18 18 C 1.52995 * 59.98632 * 252.52712 * 17 15 14 19 19 F 1.39905 * 117.50066 * 252.50021 * 18 17 15 20 20 F 1.39897 * 117.49662 * 107.50453 * 18 17 15 21 21 C 1.46844 * 111.20047 * 298.26022 * 12 11 10 22 22 C 1.53031 * 109.52661 * 61.74331 * 21 12 11 23 23 H 0.97003 * 119.99380 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.57418 * 300.15413 * 9 7 2 25 25 H 1.09001 * 109.50697 * 62.50139 * 10 9 7 26 26 H 1.08999 * 109.53474 * 302.39679 * 10 9 7 27 27 H 1.08996 * 109.45867 * 299.16276 * 11 10 9 28 28 H 1.08999 * 109.46059 * 179.19232 * 11 10 9 29 29 H 1.09002 * 109.47078 * 50.00284 * 13 12 11 30 30 H 1.09000 * 109.46952 * 290.00418 * 13 12 11 31 31 H 1.09002 * 109.47035 * 60.00274 * 14 13 12 32 32 H 1.08997 * 109.46845 * 300.00278 * 14 13 12 33 33 H 1.09007 * 117.51170 * 145.04530 * 17 15 14 34 34 H 1.08997 * 117.49718 * 0.02562 * 17 15 14 35 35 H 1.08997 * 109.45986 * 181.76161 * 21 12 11 36 36 H 1.09002 * 109.46304 * 301.72832 * 21 12 11 37 37 H 1.08997 * 109.50826 * 180.88437 * 22 21 12 38 38 H 1.08996 * 109.53581 * 60.77840 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2448 -3.6639 0.0018 11 6 1.4749 -4.9852 -0.0597 12 7 0.6549 -5.0191 -1.2775 13 6 0.0088 -6.3283 -1.4407 14 6 -1.0229 -6.2508 -2.5679 15 6 -1.6954 -7.6145 -2.7382 16 1 -1.7606 -8.2225 -1.8359 17 6 -1.4899 -8.3430 -4.0687 18 6 -2.8459 -7.7142 -3.7419 19 9 -3.9009 -8.5790 -3.4314 20 9 -3.2023 -6.5517 -4.4337 21 6 -0.3387 -3.9379 -1.2790 22 6 0.3770 -2.5855 -1.2539 23 1 -0.4849 0.8401 0.0004 24 1 0.6211 -2.5572 0.8884 25 1 2.8412 -3.6324 0.9136 26 1 2.9007 -3.5843 -0.8651 27 1 0.8300 -5.0707 0.8148 28 1 2.1802 -5.8162 -0.0734 29 1 -0.4886 -6.6064 -0.5114 30 1 0.7616 -7.0768 -1.6879 31 1 -0.5256 -5.9728 -3.4971 32 1 -1.7757 -5.5023 -2.3205 33 1 -1.4197 -9.4304 -4.0417 34 1 -0.8752 -7.8507 -4.8222 35 1 -0.9507 -4.0084 -2.1782 36 1 -0.9752 -4.0284 -0.3987 37 1 -0.3610 -1.7835 -1.2391 38 1 1.0029 -2.4879 -2.1408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691203998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:30 Heat of formation + Delta-G solvation = -96.057163 kcal Electronic energy + Delta-G solvation = -19561.979731 eV Core-core repulsion = 16267.793274 eV Total energy + Delta-G solvation = -3294.186457 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.63363 -48.33635 -40.02317 -37.89284 -35.77604 -33.57404 -31.51906 -30.55328 -27.50960 -24.80304 -23.79732 -23.46614 -22.60624 -21.39924 -20.33621 -18.64912 -18.44907 -17.76688 -17.00270 -16.64782 -16.13648 -16.03398 -15.57618 -15.08253 -15.00964 -14.73300 -14.57832 -14.43425 -14.30392 -14.08259 -13.87663 -13.11103 -12.83241 -12.81835 -12.70230 -12.47442 -12.32520 -12.18908 -11.94725 -11.84218 -11.45379 -11.27656 -10.82554 -10.76481 -10.55764 -10.34973 -9.14040 -8.07082 -6.20679 1.41949 1.43364 1.50905 2.09051 2.19801 2.44575 2.98831 3.19707 3.35957 3.47623 3.65738 4.06947 4.13831 4.24260 4.34063 4.39600 4.49193 4.58869 4.62021 4.71263 4.78045 4.80265 4.92295 4.93753 4.99373 5.05238 5.17777 5.23193 5.27410 5.37040 5.58408 5.63886 6.01792 6.04517 6.31365 6.37613 6.42004 6.91285 7.47201 8.97274 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.035757 B = 0.003962 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.879882 B = 7066.129475 C = 7580.694695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.051 0.949 9 C 0.042 3.958 10 C -0.100 4.100 11 C 0.066 3.934 12 N -0.543 5.543 13 C 0.062 3.938 14 C -0.094 4.094 15 C -0.136 4.136 16 H 0.146 0.854 17 C -0.142 4.142 18 C 0.157 3.843 19 F -0.175 7.175 20 F -0.178 7.178 21 C 0.063 3.937 22 C -0.096 4.096 23 H 0.260 0.740 24 H -0.014 1.014 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.020 0.980 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.078 0.922 36 H 0.010 0.990 37 H 0.058 0.942 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 -18.154 -6.319 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.070 0.930 9 C 0.024 3.976 10 C -0.138 4.138 11 C -0.061 4.061 12 N -0.268 5.268 13 C -0.066 4.066 14 C -0.131 4.131 15 C -0.155 4.155 16 H 0.164 0.836 17 C -0.179 4.179 18 C 0.120 3.880 19 F -0.155 7.155 20 F -0.158 7.158 21 C -0.064 4.064 22 C -0.135 4.135 23 H 0.069 0.931 24 H 0.004 0.996 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.110 0.890 29 H 0.053 0.947 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.165 0.835 34 H 0.151 0.849 35 H 0.096 0.904 36 H 0.029 0.971 37 H 0.076 0.924 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.052 -17.949 -6.724 19.277 hybrid contribution -0.766 1.333 0.793 1.730 sum -2.819 -16.616 -5.931 17.866 Atomic orbital electron populations 1.70019 1.07207 1.27075 1.51549 1.25751 0.95661 1.02380 0.94858 0.85690 0.78437 0.79178 0.78828 1.19649 1.21027 1.19654 1.21587 0.93026 0.92314 1.50360 0.93034 1.18675 0.93236 0.92759 0.92958 1.21548 0.97958 0.94091 1.00224 1.22052 0.96132 0.98344 0.89600 1.62028 1.23429 1.03246 1.38097 1.22139 0.96593 0.90930 0.96901 1.21286 0.97543 0.93994 1.00327 1.23720 0.95008 0.99854 0.96951 0.83623 1.24618 0.91236 1.03850 0.98236 1.20620 0.81768 0.81696 1.03881 1.92987 1.60451 1.68720 1.93387 1.92987 1.93456 1.49038 1.80363 1.22133 0.93269 0.91876 0.99147 1.21428 0.99131 0.94832 0.98098 0.93143 0.99596 0.92862 0.92927 0.96177 0.88956 0.94675 0.88439 0.90111 0.92005 0.83476 0.84873 0.90424 0.97136 0.92378 0.95082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.14 11.38 21.45 0.24 -53.90 16 2 C 0.01 0.67 5.31 84.66 0.45 1.11 16 3 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.53 -30.15 8.56 25.60 0.22 -29.93 16 8 H 0.05 2.84 7.75 -2.91 -0.02 2.82 16 9 C 0.04 2.17 2.16 -11.46 -0.02 2.14 16 10 C -0.10 -4.16 5.32 30.65 0.16 -4.00 16 11 C 0.07 2.22 5.43 86.33 0.47 2.69 16 12 N -0.54 -17.77 4.81 -896.34 -4.31 -22.08 16 13 C 0.06 1.44 5.23 86.30 0.45 1.89 16 14 C -0.09 -2.04 4.39 30.59 0.13 -1.91 16 15 C -0.14 -2.23 5.72 -10.77 -0.06 -2.29 16 16 H 0.15 1.91 8.07 -2.39 -0.02 1.89 16 17 C -0.14 -1.76 10.15 30.62 0.31 -1.44 16 18 C 0.16 3.15 5.20 30.59 0.16 3.31 16 19 F -0.17 -3.92 17.60 44.97 0.79 -3.13 16 20 F -0.18 -4.55 17.14 44.97 0.77 -3.78 16 21 C 0.06 2.46 4.85 86.32 0.42 2.88 16 22 C -0.10 -4.70 5.12 30.65 0.16 -4.54 16 23 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 24 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 2.49 8.12 -2.39 -0.02 2.47 16 29 H 0.03 0.80 8.08 -2.39 -0.02 0.78 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 1.79 7.88 -2.39 -0.02 1.77 16 32 H 0.06 1.61 6.21 -2.39 -0.01 1.59 16 33 H 0.15 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.13 1.44 8.03 -2.39 -0.02 1.42 16 35 H 0.08 2.75 5.81 -2.39 -0.01 2.74 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.06 3.20 6.18 -2.39 -0.01 3.19 16 38 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -63.99 308.79 3.40 -60.59 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.03 Total: 6.07 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 2.84 Total: -30.08 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -4.06 Total: -75.98 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 1.56 Total: -6.90 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -63.99 3.40 -60.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691203998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.471 kcal (2) G-P(sol) polarization free energy of solvation -63.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds