Wall clock time and date at job start Mon Mar 30 2020 06:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99604 * 2 1 4 4 H 1.48500 * 109.47471 * 269.99749 * 3 2 1 5 5 H 1.48503 * 109.47462 * 30.00159 * 3 2 1 6 6 H 1.48506 * 109.47060 * 149.99833 * 3 2 1 7 7 C 1.37877 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00490 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99776 * 179.97438 * 7 2 1 10 10 C 1.53118 * 109.52514 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.27932 * 177.56157 * 10 9 7 12 12 N 1.46842 * 109.52158 * 300.82085 * 11 10 9 13 13 C 1.46897 * 110.99802 * 185.83929 * 12 11 10 14 14 C 1.53005 * 109.47363 * 169.99988 * 13 12 11 15 15 C 1.52995 * 109.47292 * 180.02562 * 14 13 12 16 16 H 1.09000 * 115.54943 * 330.66769 * 15 14 13 17 17 C 1.53069 * 117.53532 * 116.38787 * 15 14 13 18 18 C 1.52995 * 59.98632 * 107.46773 * 17 15 14 19 19 F 1.39905 * 117.50066 * 252.50021 * 18 17 15 20 20 F 1.39897 * 117.49662 * 107.50453 * 18 17 15 21 21 C 1.46850 * 111.20022 * 61.74314 * 12 11 10 22 22 C 1.53035 * 109.52254 * 298.25962 * 21 12 11 23 23 H 0.96997 * 120.00156 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.52028 * 59.87596 * 9 7 2 25 25 H 1.09003 * 109.49909 * 57.61876 * 10 9 7 26 26 H 1.09000 * 109.53167 * 297.52374 * 10 9 7 27 27 H 1.08994 * 109.45916 * 180.80687 * 11 10 9 28 28 H 1.08998 * 109.45003 * 60.83378 * 11 10 9 29 29 H 1.08995 * 109.47115 * 50.00162 * 13 12 11 30 30 H 1.09002 * 109.47458 * 289.99725 * 13 12 11 31 31 H 1.09001 * 109.46459 * 60.00096 * 14 13 12 32 32 H 1.08997 * 109.47067 * 300.00182 * 14 13 12 33 33 H 1.09007 * 117.51170 * 359.97438 * 17 15 14 34 34 H 1.08997 * 117.49718 * 214.95939 * 17 15 14 35 35 H 1.09001 * 109.45837 * 58.27061 * 21 12 11 36 36 H 1.08994 * 109.46375 * 178.23697 * 21 12 11 37 37 H 1.09006 * 109.50058 * 299.23147 * 22 21 12 38 38 H 1.09002 * 109.53188 * 179.14054 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0233 -2.6371 0.0001 11 6 5.5525 -2.6310 -0.0620 12 7 5.9914 -1.9371 -1.2794 13 6 7.4481 -2.0320 -1.4432 14 6 7.8395 -1.5224 -2.8318 15 6 9.3566 -1.6218 -3.0026 16 1 9.9399 -1.5296 -2.0864 17 6 9.8865 -2.5645 -4.0859 18 6 9.9620 -1.0496 -4.2860 19 9 9.0859 -0.4761 -5.2137 20 9 11.2216 -0.4479 -4.1937 21 6 5.5519 -0.5359 -1.2799 22 6 4.0228 -0.4796 -1.2541 23 1 -0.4850 0.8400 0.0004 24 1 3.8761 -0.6778 0.8881 25 1 3.6260 -3.1642 -0.8674 26 1 3.6981 -3.1391 0.9113 27 1 5.9194 -3.6572 -0.0765 28 1 5.9491 -2.1157 0.8128 29 1 7.7588 -3.0713 -1.3368 30 1 7.9396 -1.4260 -0.6821 31 1 7.5288 -0.4830 -2.9382 32 1 7.3481 -2.1283 -3.5930 33 1 9.1542 -3.1146 -4.6769 34 1 10.8181 -3.0924 -3.8819 35 1 5.9488 -0.0306 -0.3994 36 1 5.9185 -0.0406 -2.1788 37 1 3.6255 -0.9726 -2.1413 38 1 3.6967 0.5604 -1.2390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691204003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:32 Heat of formation + Delta-G solvation = -94.124957 kcal Electronic energy + Delta-G solvation = -19608.611965 eV Core-core repulsion = 16314.509294 eV Total energy + Delta-G solvation = -3294.102671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.62944 -48.33255 -40.09573 -37.93785 -35.79640 -33.84216 -31.81735 -30.82686 -27.62317 -24.48413 -24.09187 -23.44695 -22.55972 -21.52862 -20.45626 -18.83119 -18.65737 -17.82514 -17.12932 -16.79308 -16.19839 -15.95889 -15.48263 -15.20519 -14.99979 -14.90723 -14.82889 -14.58752 -14.35142 -14.16230 -14.00081 -13.37209 -13.20698 -12.89214 -12.69565 -12.39183 -12.34760 -12.12654 -11.99426 -11.68077 -11.49582 -11.25830 -10.98249 -10.86883 -10.67200 -10.57183 -9.18754 -8.29836 -6.32549 1.28841 1.33222 1.43899 2.09035 2.20707 2.31727 2.92203 3.05762 3.37014 3.48249 3.66359 4.03919 4.06515 4.17765 4.24796 4.29597 4.45336 4.48059 4.62579 4.66933 4.70833 4.75034 4.77492 4.83882 4.91611 4.95882 4.97510 5.09642 5.22292 5.28832 5.30607 5.55196 5.68623 5.79226 6.19006 6.31437 6.33765 6.74954 7.32754 8.87467 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.032221 B = 0.004341 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.798735 B = 6447.937363 C = 6959.935699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.299 1.299 6 H -0.248 1.248 7 C -0.517 4.517 8 H 0.032 0.968 9 C 0.011 3.989 10 C -0.094 4.094 11 C 0.066 3.934 12 N -0.546 5.546 13 C 0.062 3.938 14 C -0.089 4.089 15 C -0.134 4.134 16 H 0.146 0.854 17 C -0.146 4.146 18 C 0.156 3.844 19 F -0.178 7.178 20 F -0.176 7.176 21 C 0.060 3.940 22 C -0.115 4.115 23 H 0.265 0.735 24 H 0.017 0.983 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.031 0.969 29 H 0.097 0.903 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.145 0.855 35 H 0.028 0.972 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.035 -4.686 -5.824 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.227 1.227 6 H -0.172 1.172 7 C -0.555 4.555 8 H 0.050 0.950 9 C -0.008 4.008 10 C -0.132 4.132 11 C -0.061 4.061 12 N -0.271 5.271 13 C -0.065 4.065 14 C -0.126 4.126 15 C -0.153 4.153 16 H 0.164 0.836 17 C -0.183 4.183 18 C 0.120 3.880 19 F -0.158 7.158 20 F -0.156 7.156 21 C -0.068 4.068 22 C -0.153 4.153 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.050 0.950 29 H 0.115 0.885 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.151 0.849 34 H 0.163 0.837 35 H 0.046 0.954 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 23.682 -4.790 -6.244 24.956 hybrid contribution -0.198 1.654 0.467 1.730 sum 23.485 -3.136 -5.777 24.387 Atomic orbital electron populations 1.70057 1.08217 1.27911 1.53166 1.25894 0.95401 1.02999 0.94380 0.85818 0.79030 0.78788 0.78622 1.19325 1.22701 1.17249 1.21443 0.91797 0.92820 1.49408 0.94983 1.19164 0.93308 0.94853 0.93508 1.21406 0.94613 0.96511 1.00657 1.22072 0.94910 0.99241 0.89916 1.61845 1.13181 1.13632 1.38454 1.22094 0.86230 1.02491 0.95699 1.21159 0.91143 1.02060 0.98285 1.23724 0.97710 0.99695 0.94185 0.83604 1.24616 1.06164 0.88418 0.99106 1.20621 0.77188 0.94587 0.95590 1.92988 1.68106 1.86968 1.67765 1.92986 1.40272 1.85909 1.96456 1.22093 0.94883 0.89353 1.00423 1.21871 0.94814 0.98490 1.00097 0.92654 0.96522 0.93125 0.92563 0.88729 0.95038 0.88501 0.94225 0.91924 0.90239 0.84935 0.83687 0.95383 0.89953 0.92709 0.94689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 2 C 0.01 0.58 5.45 84.65 0.46 1.04 16 3 Si 0.95 45.93 24.37 68.60 1.67 47.60 16 4 H -0.27 -12.33 6.89 99.48 0.69 -11.65 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 6 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 7 C -0.52 -29.98 9.14 25.60 0.23 -29.75 16 8 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 9 C 0.01 0.49 1.75 -11.46 -0.02 0.47 16 10 C -0.09 -3.62 5.32 30.65 0.16 -3.46 16 11 C 0.07 1.92 5.46 86.33 0.47 2.39 16 12 N -0.55 -15.40 4.66 -896.39 -4.17 -19.57 16 13 C 0.06 1.20 4.92 86.31 0.42 1.63 16 14 C -0.09 -1.61 5.07 30.59 0.16 -1.46 16 15 C -0.13 -1.83 5.72 -10.77 -0.06 -1.89 16 16 H 0.15 1.51 8.07 -2.39 -0.02 1.50 16 17 C -0.15 -1.53 10.15 30.62 0.31 -1.22 16 18 C 0.16 2.81 5.20 30.59 0.16 2.97 16 19 F -0.18 -4.13 17.14 44.97 0.77 -3.36 16 20 F -0.18 -3.61 17.60 44.97 0.79 -2.82 16 21 C 0.06 1.96 5.29 86.32 0.46 2.41 16 22 C -0.11 -4.84 4.84 30.64 0.15 -4.69 16 23 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 24 H 0.02 0.79 7.19 -2.39 -0.02 0.77 16 25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.09 2.20 8.01 -2.39 -0.02 2.19 16 28 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 1.50 7.99 -2.39 -0.02 1.48 16 30 H 0.04 0.73 8.12 -2.39 -0.02 0.71 16 31 H 0.06 1.34 6.43 -2.39 -0.02 1.32 16 32 H 0.08 1.51 7.88 -2.39 -0.02 1.50 16 33 H 0.13 1.21 8.04 -2.38 -0.02 1.19 16 34 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 2.39 6.21 -2.39 -0.01 2.38 16 37 H 0.05 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.03 1.55 3.38 -2.39 -0.01 1.54 16 Total: -1.00 -68.44 303.04 3.22 -65.22 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 0.96 Total: 4.95 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 2.90 Total: -31.57 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -3.88 Total: -80.04 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 1.56 Total: -6.17 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.67 Total: 47.60 kcal Total: -68.44 3.22 -65.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691204003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.903 kcal (2) G-P(sol) polarization free energy of solvation -68.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds