Wall clock time and date at job start Mon Mar 30 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 119.99965 * 2 1 4 4 H 1.48500 * 109.47409 * 239.99654 * 3 2 1 5 5 H 1.48499 * 109.47070 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47538 * 119.99658 * 3 2 1 7 7 C 1.38811 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00130 * 158.72101 * 7 2 1 9 9 N 1.36931 * 120.00290 * 338.72207 * 7 2 1 10 10 C 1.46501 * 120.00056 * 321.98396 * 9 7 2 11 11 C 1.52996 * 109.47138 * 270.00054 * 10 9 7 12 12 C 1.53007 * 109.47059 * 179.97438 * 11 10 9 13 13 H 1.08996 * 115.55325 * 330.67068 * 12 11 10 14 14 C 1.52999 * 117.49723 * 184.99738 * 12 11 10 15 15 C 1.52997 * 60.00270 * 252.51211 * 14 12 11 16 16 F 1.39902 * 117.50025 * 252.51476 * 15 14 12 17 17 F 1.39898 * 117.49981 * 107.48958 * 15 14 12 18 18 C 1.46503 * 120.00316 * 141.98302 * 9 7 2 19 19 C 1.54268 * 110.07330 * 297.73048 * 18 9 7 20 20 C 1.54888 * 104.19367 * 95.69272 * 19 18 9 21 21 C 1.54890 * 102.74719 * 37.94767 * 20 19 18 22 22 C 1.53875 * 110.03102 * 54.92276 * 18 9 7 23 23 H 0.97006 * 120.00245 * 355.04692 * 1 2 3 24 24 H 1.09005 * 109.46729 * 29.99702 * 10 9 7 25 25 H 1.09000 * 109.47192 * 149.99594 * 10 9 7 26 26 H 1.09000 * 109.47148 * 299.99933 * 11 10 9 27 27 H 1.09000 * 109.47455 * 59.99701 * 11 10 9 28 28 H 1.09003 * 117.49878 * 0.02562 * 14 12 11 29 29 H 1.09000 * 117.49543 * 144.99646 * 14 12 11 30 30 H 1.08999 * 110.01459 * 176.31279 * 18 9 7 31 31 H 1.08997 * 110.48749 * 214.37507 * 19 18 9 32 32 H 1.08999 * 110.48466 * 337.02325 * 19 18 9 33 33 H 1.09000 * 110.76204 * 279.62745 * 20 19 18 34 34 H 1.09001 * 110.75421 * 156.25369 * 20 19 18 35 35 H 1.09004 * 110.48702 * 203.38000 * 21 20 19 36 36 H 1.09002 * 110.48999 * 80.73364 * 21 20 19 37 37 H 1.08997 * 110.03357 * 359.95464 * 22 18 9 38 38 H 1.08995 * 110.03028 * 121.38486 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0350 -1.2342 -0.3389 9 7 1.3956 -2.3474 0.4314 10 6 0.4763 -2.3012 1.5711 11 6 1.2565 -2.5377 2.8657 12 6 0.2964 -2.4887 4.0560 13 1 -0.5772 -1.8494 3.9294 14 6 0.9029 -2.5868 5.4572 15 6 0.1231 -3.7683 4.8769 16 9 -1.1450 -4.0284 5.4074 17 9 0.8545 -4.8934 4.4816 18 6 1.6574 -3.6191 -0.2473 19 6 1.1927 -3.5408 -1.7163 20 6 2.4752 -3.1692 -2.5011 21 6 3.5722 -3.9792 -1.7664 22 6 3.1703 -3.8978 -0.2792 23 1 -0.4851 0.8369 0.0725 24 1 -0.0049 -1.3238 1.6102 25 1 -0.2825 -3.0754 1.4575 26 1 1.7377 -3.5150 2.8265 27 1 2.0153 -1.7635 2.9793 28 1 1.9859 -2.6858 5.5311 29 1 0.4282 -2.0119 6.2524 30 1 1.1392 -4.4293 0.2656 31 1 0.8091 -4.5059 -2.0470 32 1 0.4347 -2.7666 -1.8358 33 1 2.6738 -2.0996 -2.4328 34 1 2.3956 -3.4827 -3.5420 35 1 4.5507 -3.5250 -1.9225 36 1 3.5729 -5.0152 -2.1053 37 1 3.7099 -3.0866 0.2096 38 1 3.3863 -4.8434 0.2182 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691205057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:07 Heat of formation + Delta-G solvation = -67.183121 kcal Electronic energy + Delta-G solvation = -20299.885971 eV Core-core repulsion = 17006.951586 eV Total energy + Delta-G solvation = -3292.934385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.40398 -47.08810 -37.85679 -36.58009 -34.11316 -31.25851 -29.20135 -27.75490 -26.56430 -24.18585 -22.35055 -21.57608 -20.28788 -19.69331 -18.96101 -17.47308 -16.55751 -16.06465 -15.62307 -15.30878 -14.64762 -14.24779 -13.79876 -13.67173 -13.53149 -13.34211 -13.22111 -12.71224 -12.65671 -12.44035 -11.88066 -11.32633 -10.98488 -10.93438 -10.82894 -10.60601 -10.34723 -10.28167 -10.14604 -10.10578 -10.05472 -9.67160 -9.64669 -9.48242 -9.31604 -8.41779 -6.55243 -5.72610 -3.34878 3.26427 3.36768 3.43551 3.44439 3.45485 4.44556 4.56473 4.64625 4.88666 5.30148 5.38576 5.52335 5.53630 5.59720 5.72867 5.80633 5.91960 6.10819 6.25261 6.27273 6.37036 6.40975 6.49898 6.60712 6.67608 6.69982 6.75158 6.77415 6.92029 7.09364 7.20018 7.22764 7.39722 7.68566 7.86436 8.56032 9.23319 9.85885 10.45045 11.23727 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.007452 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.589452 B = 3756.572970 C = 4879.076834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.012 3.988 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.244 4.244 8 H 0.061 0.939 9 N -0.576 5.576 10 C 0.150 3.850 11 C -0.114 4.114 12 C -0.126 4.126 13 H 0.128 0.872 14 C -0.181 4.181 15 C 0.180 3.820 16 F -0.169 7.169 17 F -0.162 7.162 18 C 0.169 3.831 19 C -0.130 4.130 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.133 4.133 23 H 0.252 0.748 24 H 0.094 0.906 25 H 0.023 0.977 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -5.683 5.763 8.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.188 4.188 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.374 4.374 8 H 0.079 0.921 9 N -0.295 5.295 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.145 4.145 13 H 0.145 0.855 14 C -0.219 4.219 15 C 0.144 3.856 16 F -0.150 7.150 17 F -0.143 7.143 18 C 0.062 3.938 19 C -0.169 4.169 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.173 4.173 23 H 0.062 0.938 24 H 0.112 0.888 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.919 -5.591 5.680 8.198 hybrid contribution 0.343 0.633 0.190 0.745 sum 2.263 -4.958 5.871 8.010 Atomic orbital electron populations 1.70066 1.05398 1.25933 1.51442 1.25101 0.94857 0.98436 1.00430 0.86620 0.79336 0.84119 0.78232 1.20841 1.21782 1.21062 1.18887 0.93821 0.85530 1.39186 0.92131 1.43872 1.52192 1.03172 1.30311 1.20884 0.90784 1.02344 0.83645 1.21974 0.97712 1.01894 0.93768 1.23883 1.02918 0.94204 0.93525 0.85454 1.24365 1.01664 0.96927 0.98924 1.20266 0.79194 0.80701 1.05436 1.92984 1.39815 1.95183 1.87019 1.92979 1.76011 1.54097 1.91201 1.21050 0.92478 0.88643 0.91666 1.22756 0.97833 0.99288 0.97034 1.22406 0.95341 1.00924 0.96597 1.22274 0.98237 0.98670 0.96532 1.22607 0.99108 1.00123 0.95415 0.93761 0.88788 0.95886 0.92431 0.90596 0.86451 0.86682 0.93542 0.94254 0.90580 0.90510 0.93909 0.93096 0.93257 0.90880 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.20 11.49 55.49 0.64 -23.57 16 2 C 0.01 0.30 4.95 -17.43 -0.09 0.22 16 3 Si 0.89 20.75 29.61 -169.99 -5.03 15.72 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.16 7.32 -15.06 -0.11 -6.27 16 8 H 0.06 1.55 6.70 -52.49 -0.35 1.20 16 9 N -0.58 -13.34 2.32 -164.39 -0.38 -13.72 16 10 C 0.15 3.29 5.22 -4.04 -0.02 3.27 16 11 C -0.11 -2.09 5.80 -26.73 -0.16 -2.25 16 12 C -0.13 -1.95 5.72 -90.61 -0.52 -2.46 16 13 H 0.13 1.94 8.07 -51.93 -0.42 1.52 16 14 C -0.18 -2.29 10.22 -26.73 -0.27 -2.56 16 15 C 0.18 2.75 5.20 -26.73 -0.14 2.61 16 16 F -0.17 -2.66 17.60 2.25 0.04 -2.62 16 17 F -0.16 -2.70 16.48 2.25 0.04 -2.66 16 18 C 0.17 3.49 3.47 -66.81 -0.23 3.26 16 19 C -0.13 -2.61 6.16 -25.07 -0.15 -2.77 16 20 C -0.12 -2.15 6.56 -24.74 -0.16 -2.31 16 21 C -0.12 -2.02 6.83 -25.07 -0.17 -2.19 16 22 C -0.13 -2.48 6.15 -25.61 -0.16 -2.63 16 23 H 0.25 6.75 8.32 -40.82 -0.34 6.41 16 24 H 0.09 2.31 5.55 -51.93 -0.29 2.03 16 25 H 0.02 0.50 7.97 -51.93 -0.41 0.08 16 26 H 0.06 1.07 7.06 -51.93 -0.37 0.70 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.93 7.86 -51.93 -0.41 0.53 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.79 8.04 -51.93 -0.42 1.37 16 33 H 0.08 1.61 7.16 -51.93 -0.37 1.24 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.48 6.70 -51.93 -0.35 1.13 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 310.99 15.07 4.69 4.69 Total: -1.00 -26.52 310.99 -8.10 -34.62 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.90 Total: 1.64 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.18 Total: -14.09 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.26 Total: -37.29 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.08 Total: -5.28 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.52 -8.10 -34.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691205057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.564 kcal (2) G-P(sol) polarization free energy of solvation -26.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds