Wall clock time and date at job start Mon Mar 30 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 119.99965 * 2 1 4 4 H 1.48500 * 109.47409 * 239.99654 * 3 2 1 5 5 H 1.48499 * 109.47070 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47538 * 119.99658 * 3 2 1 7 7 C 1.38811 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00130 * 158.72101 * 7 2 1 9 9 N 1.36931 * 120.00290 * 338.72207 * 7 2 1 10 10 C 1.46501 * 120.00056 * 321.98396 * 9 7 2 11 11 C 1.52996 * 109.47138 * 270.00054 * 10 9 7 12 12 C 1.53007 * 109.47059 * 179.97438 * 11 10 9 13 13 H 1.08996 * 115.55325 * 330.67068 * 12 11 10 14 14 C 1.52999 * 117.49723 * 184.99738 * 12 11 10 15 15 C 1.52997 * 60.00270 * 252.51211 * 14 12 11 16 16 F 1.39902 * 117.50025 * 252.51476 * 15 14 12 17 17 F 1.39898 * 117.49981 * 107.48958 * 15 14 12 18 18 C 1.46503 * 120.00316 * 141.98302 * 9 7 2 19 19 C 1.54268 * 110.07330 * 297.73048 * 18 9 7 20 20 C 1.54888 * 104.19367 * 95.69272 * 19 18 9 21 21 C 1.54890 * 102.74719 * 37.94767 * 20 19 18 22 22 C 1.53875 * 110.03102 * 54.92276 * 18 9 7 23 23 H 0.97006 * 120.00245 * 355.04692 * 1 2 3 24 24 H 1.09005 * 109.46729 * 29.99702 * 10 9 7 25 25 H 1.09000 * 109.47192 * 149.99594 * 10 9 7 26 26 H 1.09000 * 109.47148 * 299.99933 * 11 10 9 27 27 H 1.09000 * 109.47455 * 59.99701 * 11 10 9 28 28 H 1.09003 * 117.49878 * 0.02562 * 14 12 11 29 29 H 1.09000 * 117.49543 * 144.99646 * 14 12 11 30 30 H 1.08999 * 110.01459 * 176.31279 * 18 9 7 31 31 H 1.08997 * 110.48749 * 214.37507 * 19 18 9 32 32 H 1.08999 * 110.48466 * 337.02325 * 19 18 9 33 33 H 1.09000 * 110.76204 * 279.62745 * 20 19 18 34 34 H 1.09001 * 110.75421 * 156.25369 * 20 19 18 35 35 H 1.09004 * 110.48702 * 203.38000 * 21 20 19 36 36 H 1.09002 * 110.48999 * 80.73364 * 21 20 19 37 37 H 1.08997 * 110.03357 * 359.95464 * 22 18 9 38 38 H 1.08995 * 110.03028 * 121.38486 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0350 -1.2342 -0.3389 9 7 1.3956 -2.3474 0.4314 10 6 0.4763 -2.3012 1.5711 11 6 1.2565 -2.5377 2.8657 12 6 0.2964 -2.4887 4.0560 13 1 -0.5772 -1.8494 3.9294 14 6 0.9029 -2.5868 5.4572 15 6 0.1231 -3.7683 4.8769 16 9 -1.1450 -4.0284 5.4074 17 9 0.8545 -4.8934 4.4816 18 6 1.6574 -3.6191 -0.2473 19 6 1.1927 -3.5408 -1.7163 20 6 2.4752 -3.1692 -2.5011 21 6 3.5722 -3.9792 -1.7664 22 6 3.1703 -3.8978 -0.2792 23 1 -0.4851 0.8369 0.0725 24 1 -0.0049 -1.3238 1.6102 25 1 -0.2825 -3.0754 1.4575 26 1 1.7377 -3.5150 2.8265 27 1 2.0153 -1.7635 2.9793 28 1 1.9859 -2.6858 5.5311 29 1 0.4282 -2.0119 6.2524 30 1 1.1392 -4.4293 0.2656 31 1 0.8091 -4.5059 -2.0470 32 1 0.4347 -2.7666 -1.8358 33 1 2.6738 -2.0996 -2.4328 34 1 2.3956 -3.4827 -3.5420 35 1 4.5507 -3.5250 -1.9225 36 1 3.5729 -5.0152 -2.1053 37 1 3.7099 -3.0866 0.2096 38 1 3.3863 -4.8434 0.2182 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691205057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:07 Heat of formation + Delta-G solvation = -78.631659 kcal Electronic energy + Delta-G solvation = -20300.382417 eV Core-core repulsion = 17006.951586 eV Total energy + Delta-G solvation = -3293.430831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.62896 -48.32293 -39.48598 -37.86700 -35.80354 -33.13349 -30.77286 -29.29384 -28.29493 -25.92743 -23.47523 -23.23274 -21.67732 -21.15407 -20.69739 -18.72448 -18.16664 -17.52151 -17.03160 -16.87882 -16.36274 -15.98686 -15.11145 -14.99810 -14.93690 -14.86402 -14.55594 -14.23414 -14.11405 -13.96988 -13.41445 -13.03690 -12.77511 -12.59914 -12.32908 -12.24471 -12.07276 -11.77538 -11.73955 -11.66691 -11.62421 -11.32672 -11.20203 -11.07331 -10.68722 -10.38478 -8.47318 -7.68306 -5.34176 1.48878 1.51660 1.56780 2.11358 2.25465 2.57529 3.23055 3.39788 3.49044 3.70085 3.76497 4.02064 4.07072 4.30733 4.35412 4.60000 4.64209 4.71104 4.74726 4.81906 4.89067 4.95316 4.99687 5.06630 5.08212 5.17638 5.21036 5.29782 5.33456 5.44698 5.59887 5.65550 5.73367 5.81028 5.92649 6.58635 7.28682 7.98090 8.52041 9.23815 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.007452 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.589452 B = 3756.572970 C = 4879.076834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.035 4.035 3 Si 0.940 3.060 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.233 4.233 8 H 0.056 0.944 9 N -0.590 5.590 10 C 0.152 3.848 11 C -0.094 4.094 12 C -0.145 4.145 13 H 0.126 0.874 14 C -0.143 4.143 15 C 0.168 3.832 16 F -0.174 7.174 17 F -0.173 7.173 18 C 0.159 3.841 19 C -0.127 4.127 20 C -0.113 4.113 21 C -0.110 4.110 22 C -0.127 4.127 23 H 0.246 0.754 24 H 0.067 0.933 25 H 0.015 0.985 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 -6.614 6.534 9.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.232 4.232 3 Si 0.770 3.230 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.364 4.364 8 H 0.074 0.926 9 N -0.310 5.310 10 C 0.025 3.975 11 C -0.134 4.134 12 C -0.164 4.164 13 H 0.144 0.856 14 C -0.180 4.180 15 C 0.132 3.868 16 F -0.154 7.154 17 F -0.153 7.153 18 C 0.052 3.948 19 C -0.166 4.166 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.166 4.166 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.151 0.849 29 H 0.163 0.837 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.396 -6.539 6.458 9.798 hybrid contribution -0.152 0.845 -0.086 0.863 sum 3.244 -5.694 6.372 9.140 Atomic orbital electron populations 1.70192 1.06524 1.25937 1.53489 1.25660 0.95382 1.00825 1.01320 0.85773 0.78072 0.80990 0.78214 1.20776 1.22505 1.20430 1.18980 0.93488 0.86303 1.37634 0.92630 1.44081 1.52078 1.03610 1.31183 1.20789 0.90950 1.00487 0.85248 1.21591 0.97358 1.01254 0.93185 1.23734 1.03034 0.95279 0.94384 0.85587 1.24511 1.02488 0.93947 0.97057 1.20483 0.79587 0.80508 1.06267 1.92973 1.40278 1.95205 1.86963 1.92954 1.76182 1.54720 1.91466 1.21267 0.94247 0.87570 0.91676 1.22678 0.97520 0.99065 0.97354 1.22341 0.95179 0.99424 0.98093 1.22243 0.97829 0.99984 0.94702 1.22502 0.96812 1.00377 0.96900 0.94424 0.91530 0.96662 0.92507 0.91686 0.84872 0.83702 0.93249 0.91838 0.94895 0.93629 0.91569 0.92016 0.90487 0.92890 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.83 11.49 21.65 0.25 -51.58 16 2 C -0.04 -1.87 4.95 84.86 0.42 -1.45 16 3 Si 0.94 43.31 29.61 68.60 2.03 45.34 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.23 -11.97 7.32 84.03 0.62 -11.35 16 8 H 0.06 2.88 6.70 -2.91 -0.02 2.87 16 9 N -0.59 -27.77 2.32 -674.01 -1.56 -29.33 16 10 C 0.15 6.82 5.22 86.38 0.45 7.27 16 11 C -0.09 -3.45 5.80 30.60 0.18 -3.28 16 12 C -0.14 -4.34 5.72 -10.79 -0.06 -4.40 16 13 H 0.13 3.81 8.07 -2.39 -0.02 3.79 16 14 C -0.14 -3.17 10.22 30.59 0.31 -2.86 16 15 C 0.17 4.85 5.20 30.59 0.16 5.01 16 16 F -0.17 -5.21 17.60 44.97 0.79 -4.42 16 17 F -0.17 -5.51 16.48 44.97 0.74 -4.77 16 18 C 0.16 6.50 3.47 45.72 0.16 6.66 16 19 C -0.13 -5.07 6.16 31.67 0.20 -4.87 16 20 C -0.11 -4.06 6.56 31.89 0.21 -3.86 16 21 C -0.11 -3.41 6.83 31.67 0.22 -3.20 16 22 C -0.13 -4.48 6.15 31.32 0.19 -4.29 16 23 H 0.25 13.67 8.32 -92.70 -0.77 12.90 16 24 H 0.07 3.41 5.55 -2.38 -0.01 3.40 16 25 H 0.01 0.68 7.97 -2.39 -0.02 0.66 16 26 H 0.06 2.07 7.06 -2.39 -0.02 2.05 16 27 H 0.06 2.50 8.14 -2.39 -0.02 2.49 16 28 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.05 1.96 7.86 -2.39 -0.02 1.94 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.03 1.58 8.04 -2.39 -0.02 1.56 16 33 H 0.04 1.91 7.16 -2.39 -0.02 1.90 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.05 2.08 6.70 -2.39 -0.02 2.07 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -58.23 310.99 6.33 -51.90 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.04 Total: 13.47 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 3.05 Total: -20.62 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -1.32 Total: -80.91 kcal Atomic # 9 Polarization: -10.72 SS G_CDS: 1.53 Total: -9.19 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -58.23 6.33 -51.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691205057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.728 kcal (2) G-P(sol) polarization free energy of solvation -58.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds