Wall clock time and date at job start Mon Mar 30 2020 06:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48496 * 109.47508 * 240.00371 * 3 2 1 5 5 H 1.48504 * 109.47020 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47253 * 120.00103 * 3 2 1 7 7 C 1.37880 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99919 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.50479 * 300.00361 * 9 7 2 11 11 C 1.53119 * 109.50187 * 60.08126 * 9 7 2 12 12 C 1.53119 * 109.15731 * 177.63352 * 11 9 7 13 13 C 1.53039 * 109.28129 * 302.34211 * 12 11 9 14 14 N 1.46848 * 109.51997 * 59.18522 * 13 12 11 15 15 C 1.46897 * 111.00171 * 174.16537 * 14 13 12 16 16 C 1.52997 * 109.47367 * 66.03954 * 15 14 13 17 17 C 1.53009 * 109.47058 * 180.02562 * 16 15 14 18 18 H 1.08995 * 115.54899 * 29.32703 * 17 16 15 19 19 C 1.52999 * 117.49876 * 243.62246 * 17 16 15 20 20 C 1.52994 * 59.99901 * 252.51073 * 19 17 16 21 21 F 1.39904 * 117.49910 * 252.50806 * 20 19 17 22 22 F 1.39904 * 117.52020 * 107.48424 * 20 19 17 23 23 C 1.46855 * 111.19639 * 298.25566 * 14 13 12 24 24 H 0.97001 * 120.00645 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.52613 * 297.53923 * 11 9 7 26 26 H 1.09000 * 109.52428 * 57.72899 * 11 9 7 27 27 H 1.08998 * 109.50840 * 62.28812 * 12 11 9 28 28 H 1.09009 * 109.50099 * 182.36576 * 12 11 9 29 29 H 1.09001 * 109.46699 * 179.19867 * 13 12 11 30 30 H 1.09004 * 109.46628 * 299.18083 * 13 12 11 31 31 H 1.08997 * 109.47359 * 186.04490 * 15 14 13 32 32 H 1.09003 * 109.46454 * 306.03993 * 15 14 13 33 33 H 1.08997 * 109.47344 * 300.00003 * 16 15 14 34 34 H 1.09003 * 109.47302 * 60.00558 * 16 15 14 35 35 H 1.09007 * 117.49646 * 0.02562 * 19 17 16 36 36 H 1.09003 * 117.49923 * 145.01282 * 19 17 16 37 37 H 1.09003 * 109.46449 * 301.72795 * 23 14 13 38 38 H 1.08992 * 109.46444 * 181.76011 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6244 -2.5576 0.8895 11 6 0.3715 -2.5816 -1.2512 12 6 -0.3449 -3.9347 -1.2734 13 6 0.6946 -5.0574 -1.2396 14 7 1.5098 -4.9350 -0.0244 15 6 2.4266 -6.0746 0.1116 16 6 3.4544 -6.0404 -1.0212 17 6 4.4089 -7.2279 -0.8799 18 1 3.9879 -8.1159 -0.4086 19 6 5.8846 -6.9207 -0.6176 20 6 5.4429 -7.4388 -1.9877 21 9 5.7760 -8.7568 -2.3180 22 9 5.4429 -6.5315 -3.0526 23 6 2.2443 -3.6634 -0.0036 24 1 -0.4851 0.8400 0.0004 25 1 -0.3660 -1.7792 -1.2315 26 1 0.9935 -2.4841 -2.1410 27 1 -0.9965 -4.0158 -0.4035 28 1 -0.9402 -4.0164 -2.1829 29 1 0.1873 -6.0222 -1.2410 30 1 1.3373 -4.9838 -2.1169 31 1 2.9409 -6.0148 1.0707 32 1 1.8602 -7.0045 0.0604 33 1 2.9401 -6.1003 -1.9804 34 1 4.0208 -5.1105 -0.9701 35 1 6.1754 -5.8726 -0.5452 36 1 6.4347 -7.6066 0.0266 37 1 2.8796 -3.5965 -0.8868 38 1 2.8625 -3.6157 0.8928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691206584.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:33 Heat of formation + Delta-G solvation = -82.307610 kcal Electronic energy + Delta-G solvation = -19843.270723 eV Core-core repulsion = 16549.680491 eV Total energy + Delta-G solvation = -3293.590232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.75413 -47.43407 -38.74100 -36.81081 -33.94764 -32.03843 -29.88776 -28.91145 -24.94479 -24.44962 -22.72891 -21.70144 -21.28654 -20.77457 -18.42477 -17.71729 -16.87614 -16.31393 -15.97800 -15.02720 -14.78790 -14.44761 -14.16640 -14.10552 -13.84881 -13.70195 -13.48330 -13.08017 -12.86962 -12.38503 -12.24838 -11.98834 -11.69853 -11.37457 -11.24083 -10.94788 -10.81517 -10.66248 -10.37357 -10.07958 -9.98918 -9.80168 -9.45362 -9.03470 -8.70325 -8.29280 -7.64221 -5.96402 -4.02739 2.90276 2.95606 3.32648 3.37549 3.39754 4.04145 4.18105 4.40642 4.48200 4.58274 5.01028 5.24052 5.26898 5.32356 5.33575 5.55018 5.59544 5.66732 5.82424 5.84259 5.97074 6.08886 6.26268 6.31918 6.42875 6.51946 6.72677 6.76898 6.97630 7.22680 7.40761 7.65510 7.75552 7.81914 8.09342 8.18575 8.48862 9.01114 9.61529 11.09538 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.025079 B = 0.004780 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.217547 B = 5856.890996 C = 6479.515071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.060 3.940 14 N -0.535 5.535 15 C 0.061 3.939 16 C -0.136 4.136 17 C -0.135 4.135 18 H 0.130 0.870 19 C -0.174 4.174 20 C 0.185 3.815 21 F -0.166 7.166 22 F -0.159 7.159 23 C 0.064 3.936 24 H 0.260 0.740 25 H 0.090 0.910 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.026 0.974 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.023 0.977 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.096 -14.266 -1.595 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.068 4.068 14 N -0.258 5.258 15 C -0.068 4.068 16 C -0.175 4.175 17 C -0.154 4.154 18 H 0.148 0.852 19 C -0.212 4.212 20 C 0.148 3.852 21 F -0.147 7.147 22 F -0.140 7.140 23 C -0.062 4.062 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.041 0.959 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.609 -14.138 -1.231 15.655 hybrid contribution 1.213 0.795 -1.048 1.790 sum 7.822 -13.343 -2.280 15.634 Atomic orbital electron populations 1.69876 1.05839 1.26422 1.50569 1.24925 0.94811 0.98907 0.95125 0.86703 0.79635 0.83362 0.78536 1.20404 1.21312 1.20313 1.21102 0.92741 0.90712 1.50848 0.92957 1.18666 0.92650 0.90336 0.94824 0.94832 1.21655 1.00038 0.94739 0.98470 1.21683 0.97221 0.96512 1.00189 1.22062 0.95562 0.98694 0.90510 1.62251 1.23300 1.02509 1.37730 1.22176 0.92513 0.95040 0.97083 1.22015 0.97631 0.95875 1.01935 1.23739 0.92130 1.02632 0.96941 0.85241 1.24453 0.97781 1.04830 0.94086 1.20174 1.08914 0.74443 0.81656 1.93006 1.93335 1.34415 1.93918 1.93030 1.97044 1.65281 1.58634 1.22344 0.96544 0.88552 0.98794 0.93008 0.89130 0.95204 0.92115 0.93576 0.92469 0.95607 0.90778 0.91341 0.90624 0.90174 0.85891 0.86153 0.95884 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 11.35 55.43 0.63 -24.63 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.00 8.56 -34.44 -0.29 -14.29 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.05 1.34 2.26 -91.69 -0.21 1.13 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.61 5.03 -26.61 -0.13 -2.75 16 12 C -0.12 -2.29 6.09 -26.65 -0.16 -2.46 16 13 C 0.06 1.02 5.05 -3.83 -0.02 1.00 16 14 N -0.54 -9.46 4.86 -234.66 -1.14 -10.60 16 15 C 0.06 0.82 5.32 -3.83 -0.02 0.80 16 16 C -0.14 -1.72 4.44 -26.73 -0.12 -1.84 16 17 C -0.13 -1.37 5.72 -90.62 -0.52 -1.89 16 18 H 0.13 1.10 8.07 -51.93 -0.42 0.68 16 19 C -0.17 -1.58 10.15 -26.73 -0.27 -1.85 16 20 C 0.18 2.14 5.20 -26.74 -0.14 2.00 16 21 F -0.17 -2.02 17.60 2.25 0.04 -1.99 16 22 F -0.16 -2.21 17.14 2.25 0.04 -2.17 16 23 C 0.06 1.32 4.06 -3.83 -0.02 1.31 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 29 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 30 H 0.03 0.44 6.75 -51.93 -0.35 0.09 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.08 1.04 6.68 -51.93 -0.35 0.69 16 34 H 0.08 1.13 6.24 -51.93 -0.32 0.81 16 35 H 0.12 1.10 8.03 -51.92 -0.42 0.69 16 36 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.02 0.48 6.61 -51.93 -0.34 0.13 16 38 H 0.06 1.19 8.12 -51.93 -0.42 0.76 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -28.40 306.69 -8.68 -37.08 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.86 Total: -1.28 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -2.00 Total: -17.18 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.51 Total: -35.22 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.08 Total: -4.16 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.40 -8.68 -37.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691206584.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.223 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds