Wall clock time and date at job start Mon Mar 30 2020 06:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48496 * 109.47508 * 240.00371 * 3 2 1 5 5 H 1.48504 * 109.47020 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47253 * 120.00103 * 3 2 1 7 7 C 1.37880 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99919 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.50479 * 300.00361 * 9 7 2 11 11 C 1.53119 * 109.50187 * 60.08126 * 9 7 2 12 12 C 1.53119 * 109.15731 * 177.63352 * 11 9 7 13 13 C 1.53039 * 109.28129 * 302.34211 * 12 11 9 14 14 N 1.46848 * 109.51997 * 59.18522 * 13 12 11 15 15 C 1.46897 * 111.00171 * 174.16537 * 14 13 12 16 16 C 1.52997 * 109.47367 * 66.03954 * 15 14 13 17 17 C 1.53009 * 109.47058 * 180.02562 * 16 15 14 18 18 H 1.08995 * 115.54899 * 29.32703 * 17 16 15 19 19 C 1.52999 * 117.49876 * 243.62246 * 17 16 15 20 20 C 1.52994 * 59.99901 * 252.51073 * 19 17 16 21 21 F 1.39904 * 117.49910 * 252.50806 * 20 19 17 22 22 F 1.39904 * 117.52020 * 107.48424 * 20 19 17 23 23 C 1.46855 * 111.19639 * 298.25566 * 14 13 12 24 24 H 0.97001 * 120.00645 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.52613 * 297.53923 * 11 9 7 26 26 H 1.09000 * 109.52428 * 57.72899 * 11 9 7 27 27 H 1.08998 * 109.50840 * 62.28812 * 12 11 9 28 28 H 1.09009 * 109.50099 * 182.36576 * 12 11 9 29 29 H 1.09001 * 109.46699 * 179.19867 * 13 12 11 30 30 H 1.09004 * 109.46628 * 299.18083 * 13 12 11 31 31 H 1.08997 * 109.47359 * 186.04490 * 15 14 13 32 32 H 1.09003 * 109.46454 * 306.03993 * 15 14 13 33 33 H 1.08997 * 109.47344 * 300.00003 * 16 15 14 34 34 H 1.09003 * 109.47302 * 60.00558 * 16 15 14 35 35 H 1.09007 * 117.49646 * 0.02562 * 19 17 16 36 36 H 1.09003 * 117.49923 * 145.01282 * 19 17 16 37 37 H 1.09003 * 109.46449 * 301.72795 * 23 14 13 38 38 H 1.08992 * 109.46444 * 181.76011 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6244 -2.5576 0.8895 11 6 0.3715 -2.5816 -1.2512 12 6 -0.3449 -3.9347 -1.2734 13 6 0.6946 -5.0574 -1.2396 14 7 1.5098 -4.9350 -0.0244 15 6 2.4266 -6.0746 0.1116 16 6 3.4544 -6.0404 -1.0212 17 6 4.4089 -7.2279 -0.8799 18 1 3.9879 -8.1159 -0.4086 19 6 5.8846 -6.9207 -0.6176 20 6 5.4429 -7.4388 -1.9877 21 9 5.7760 -8.7568 -2.3180 22 9 5.4429 -6.5315 -3.0526 23 6 2.2443 -3.6634 -0.0036 24 1 -0.4851 0.8400 0.0004 25 1 -0.3660 -1.7792 -1.2315 26 1 0.9935 -2.4841 -2.1410 27 1 -0.9965 -4.0158 -0.4035 28 1 -0.9402 -4.0164 -2.1829 29 1 0.1873 -6.0222 -1.2410 30 1 1.3373 -4.9838 -2.1169 31 1 2.9409 -6.0148 1.0707 32 1 1.8602 -7.0045 0.0604 33 1 2.9401 -6.1003 -1.9804 34 1 4.0208 -5.1105 -0.9701 35 1 6.1754 -5.8726 -0.5452 36 1 6.4347 -7.6066 0.0266 37 1 2.8796 -3.5965 -0.8868 38 1 2.8625 -3.6157 0.8928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691206584.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:32 Heat of formation + Delta-G solvation = -98.220754 kcal Electronic energy + Delta-G solvation = -19843.960769 eV Core-core repulsion = 16549.680491 eV Total energy + Delta-G solvation = -3294.280278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.66417 -48.36391 -40.14559 -37.83154 -35.64501 -33.74805 -31.66514 -30.16913 -26.91775 -25.76231 -23.58682 -23.21452 -22.66150 -21.92790 -20.00424 -18.68809 -18.43862 -17.65860 -16.98416 -16.69523 -16.02513 -15.96206 -15.52191 -15.14643 -15.02960 -14.85074 -14.61841 -14.50237 -14.18356 -13.94113 -13.77259 -13.40184 -12.97467 -12.85318 -12.72731 -12.52107 -12.39135 -12.15727 -11.83894 -11.69791 -11.38275 -11.27614 -10.90803 -10.80074 -10.63671 -10.35847 -9.03876 -8.06419 -6.20489 1.42259 1.43261 1.50786 2.06693 2.17333 2.43804 3.12994 3.20617 3.29500 3.43256 3.62887 4.09478 4.18619 4.23234 4.29466 4.38882 4.43264 4.61680 4.67143 4.68546 4.72146 4.82245 4.93289 4.93562 4.96995 5.08458 5.13762 5.21763 5.31188 5.42632 5.55003 5.64902 5.99126 6.14932 6.23600 6.42359 6.48319 6.92714 7.47396 8.97997 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.025079 B = 0.004780 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.217547 B = 5856.890996 C = 6479.515071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.050 3.950 10 H -0.004 1.004 11 C -0.105 4.105 12 C -0.113 4.113 13 C 0.064 3.936 14 N -0.548 5.548 15 C 0.063 3.937 16 C -0.129 4.129 17 C -0.126 4.126 18 H 0.155 0.845 19 C -0.154 4.154 20 C 0.158 3.842 21 F -0.172 7.172 22 F -0.180 7.180 23 C 0.082 3.918 24 H 0.260 0.740 25 H 0.056 0.944 26 H 0.019 0.981 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.027 0.973 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.123 0.877 36 H 0.149 0.851 37 H 0.019 0.981 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.107 -15.834 -1.229 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.070 0.930 9 C 0.031 3.969 10 H 0.014 0.986 11 C -0.143 4.143 12 C -0.151 4.151 13 C -0.064 4.064 14 N -0.270 5.270 15 C -0.065 4.065 16 C -0.168 4.168 17 C -0.145 4.145 18 H 0.173 0.827 19 C -0.191 4.191 20 C 0.122 3.878 21 F -0.152 7.152 22 F -0.160 7.160 23 C -0.046 4.046 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.045 0.955 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.166 0.834 37 H 0.038 0.962 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.632 -15.724 -0.865 17.500 hybrid contribution 0.875 1.265 -1.156 1.924 sum 8.507 -14.459 -2.021 16.897 Atomic orbital electron populations 1.70027 1.07186 1.27068 1.51252 1.25707 0.95623 1.02275 0.94844 0.85710 0.78451 0.79280 0.78792 1.19851 1.21009 1.19511 1.21505 0.92969 0.92230 1.50735 0.93036 1.18610 0.93119 0.91573 0.93581 0.98592 1.21464 0.99093 0.96347 0.97391 1.21602 0.97683 0.94981 1.00791 1.22045 0.94945 0.98998 0.90382 1.62166 1.24246 1.02468 1.38146 1.22274 0.92355 0.94105 0.97760 1.21852 0.97687 0.96247 1.00996 1.23725 0.92238 1.02418 0.96161 0.82706 1.24590 0.97002 1.05433 0.92089 1.20575 1.11186 0.74141 0.81889 1.92989 1.93492 1.34733 1.94023 1.92983 1.97265 1.65996 1.59788 1.21962 0.95250 0.88814 0.98565 0.93123 0.92587 0.96205 0.93067 0.91530 0.89192 0.95522 0.89779 0.88743 0.91748 0.92031 0.85913 0.83352 0.96248 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.60 11.35 21.45 0.24 -53.36 16 2 C 0.01 0.80 5.30 84.66 0.45 1.24 16 3 Si 0.95 43.85 29.54 68.60 2.03 45.87 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.54 -29.76 8.56 25.60 0.22 -29.54 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.05 2.54 2.26 -11.49 -0.03 2.52 16 10 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 11 C -0.10 -5.06 5.03 30.67 0.15 -4.91 16 12 C -0.11 -4.32 6.09 30.65 0.19 -4.13 16 13 C 0.06 2.06 5.05 86.33 0.44 2.50 16 14 N -0.55 -18.43 4.86 -896.34 -4.35 -22.79 16 15 C 0.06 1.50 5.32 86.30 0.46 1.96 16 16 C -0.13 -2.98 4.44 30.60 0.14 -2.85 16 17 C -0.13 -2.19 5.72 -10.79 -0.06 -2.25 16 18 H 0.16 1.93 8.07 -2.39 -0.02 1.91 16 19 C -0.15 -2.34 10.15 30.59 0.31 -2.03 16 20 C 0.16 3.38 5.20 30.59 0.16 3.54 16 21 F -0.17 -3.88 17.60 44.97 0.79 -3.08 16 22 F -0.18 -4.89 17.14 44.97 0.77 -4.12 16 23 C 0.08 3.34 4.06 86.32 0.35 3.69 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 25 H 0.06 3.08 6.15 -2.39 -0.01 3.06 16 26 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.09 2.36 8.06 -2.39 -0.02 2.34 16 30 H 0.03 0.87 6.75 -2.38 -0.02 0.85 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 1.83 8.06 -2.39 -0.02 1.81 16 33 H 0.06 1.65 6.68 -2.39 -0.02 1.63 16 34 H 0.06 1.66 6.24 -2.39 -0.01 1.64 16 35 H 0.12 1.92 8.03 -2.38 -0.02 1.90 16 36 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.02 0.80 6.61 -2.39 -0.02 0.79 16 38 H 0.06 2.34 8.12 -2.39 -0.02 2.32 16 Total: -1.00 -63.12 306.69 3.29 -59.83 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.04 Total: 7.91 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 2.77 Total: -30.26 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -4.11 Total: -76.15 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 1.56 Total: -7.20 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -63.12 3.29 -59.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691206584.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.391 kcal (2) G-P(sol) polarization free energy of solvation -63.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds