Wall clock time and date at job start Mon Mar 30 2020 06:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00142 * 2 1 4 4 H 1.48498 * 109.46951 * 269.99458 * 3 2 1 5 5 H 1.48496 * 109.47609 * 29.99728 * 3 2 1 6 6 H 1.48502 * 109.47134 * 150.00003 * 3 2 1 7 7 C 1.37881 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00039 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00308 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.50103 * 59.92085 * 9 7 2 11 11 C 1.53123 * 109.53518 * 299.83015 * 9 7 2 12 12 C 1.53124 * 109.16220 * 182.38267 * 11 9 7 13 13 C 1.53035 * 109.27475 * 57.64849 * 12 11 9 14 14 N 1.46846 * 109.52744 * 300.82106 * 13 12 11 15 15 C 1.46898 * 111.00056 * 185.84176 * 14 13 12 16 16 C 1.53005 * 109.47201 * 293.95628 * 15 14 13 17 17 C 1.52998 * 109.47119 * 179.97438 * 16 15 14 18 18 H 1.08998 * 115.55010 * 29.33005 * 17 16 15 19 19 C 1.53005 * 117.49767 * 174.99875 * 17 16 15 20 20 C 1.53000 * 59.99892 * 107.49069 * 19 17 16 21 21 F 1.39899 * 117.49812 * 252.50873 * 20 19 17 22 22 F 1.39901 * 117.49819 * 107.48938 * 20 19 17 23 23 C 1.46846 * 111.19780 * 61.74478 * 14 13 12 24 24 H 0.97000 * 119.99443 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.51952 * 302.28527 * 11 9 7 26 26 H 1.08995 * 109.52691 * 62.47496 * 11 9 7 27 27 H 1.08993 * 109.50112 * 297.71243 * 12 11 9 28 28 H 1.08992 * 109.50394 * 177.58991 * 12 11 9 29 29 H 1.09008 * 109.45841 * 180.80263 * 13 12 11 30 30 H 1.09003 * 109.46290 * 60.84246 * 13 12 11 31 31 H 1.08998 * 109.47354 * 53.94952 * 15 14 13 32 32 H 1.09001 * 109.47115 * 173.95752 * 15 14 13 33 33 H 1.09006 * 109.46722 * 299.99965 * 16 15 14 34 34 H 1.09003 * 109.47422 * 59.99740 * 16 15 14 35 35 H 1.08995 * 117.49818 * 214.98162 * 19 17 16 36 36 H 1.09003 * 117.49647 * 359.97142 * 19 17 16 37 37 H 1.09009 * 109.46169 * 58.27021 * 23 14 13 38 38 H 1.08995 * 109.46611 * 178.23876 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1943 0.0011 10 1 3.8750 -0.6791 0.8902 11 6 4.0240 -0.4768 -1.2507 12 6 5.5541 -0.5338 -1.2718 13 6 6.0056 -1.9956 -1.2344 14 7 5.4907 -2.6374 -0.0181 15 6 6.0184 -4.0012 0.1212 16 6 5.4753 -4.8764 -1.0101 17 6 6.0255 -6.2967 -0.8653 18 1 6.2480 -6.6130 0.1537 19 6 5.5056 -7.3581 -1.8370 20 6 6.9308 -6.8208 -1.9818 21 9 7.1921 -5.9648 -3.0570 22 9 7.9813 -7.6695 -1.6168 23 6 4.0223 -2.6368 0.0016 24 1 -0.4849 0.8401 -0.0004 25 1 3.6290 -0.9684 -2.1398 26 1 3.6986 0.5633 -1.2335 27 1 5.9498 -0.0084 -0.4027 28 1 5.9233 -0.0621 -2.1822 29 1 7.0948 -2.0393 -1.2348 30 1 5.6211 -2.5170 -2.1109 31 1 7.1070 -3.9765 0.0707 32 1 5.7084 -4.4145 1.0811 33 1 4.3866 -4.9011 -0.9597 34 1 5.7852 -4.4632 -1.9700 35 1 5.3864 -8.3728 -1.4572 36 1 4.7712 -7.0447 -2.5790 37 1 3.6470 -3.1552 -0.8808 38 1 3.6709 -3.1462 0.8988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691206586.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:37 Heat of formation + Delta-G solvation = -74.750686 kcal Electronic energy + Delta-G solvation = -19943.943562 eV Core-core repulsion = 16650.681023 eV Total energy + Delta-G solvation = -3293.262539 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.81901 -47.50043 -38.93280 -36.92231 -34.10724 -32.24441 -30.30084 -29.21782 -25.00726 -24.69454 -22.77503 -21.88962 -21.27545 -20.83078 -18.67602 -17.83957 -16.97227 -16.65293 -16.11498 -15.52798 -14.71278 -14.42100 -14.20795 -14.10340 -13.93002 -13.77853 -13.67700 -13.34692 -13.03724 -12.76828 -12.36200 -12.19657 -11.97737 -11.58150 -11.24514 -11.09058 -11.07608 -10.74280 -10.38093 -10.08660 -9.98713 -9.90607 -9.66078 -9.10801 -8.92608 -8.50791 -7.80170 -6.06653 -4.05677 2.85283 2.91046 3.29364 3.40698 3.44148 3.97692 4.13977 4.39767 4.43362 4.43856 4.96553 5.15536 5.19770 5.23939 5.25507 5.44627 5.50553 5.52633 5.61013 5.76555 5.80652 5.88555 6.06210 6.14482 6.21859 6.30435 6.34842 6.49726 6.61783 6.81362 6.84771 7.21091 7.40483 7.59534 7.65723 7.86919 8.52326 8.96278 9.56537 11.06597 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.037047 B = 0.004623 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.607314 B = 6055.182187 C = 6402.168099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.019 3.981 10 H 0.035 0.965 11 C -0.122 4.122 12 C -0.120 4.120 13 C 0.060 3.940 14 N -0.539 5.539 15 C 0.060 3.940 16 C -0.141 4.141 17 C -0.134 4.134 18 H 0.131 0.869 19 C -0.176 4.176 20 C 0.186 3.814 21 F -0.160 7.160 22 F -0.165 7.165 23 C 0.074 3.926 24 H 0.263 0.737 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.030 0.970 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.400 -11.761 -3.002 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.552 4.552 8 H 0.090 0.910 9 C -0.001 4.001 10 H 0.053 0.947 11 C -0.160 4.160 12 C -0.158 4.158 13 C -0.068 4.068 14 N -0.262 5.262 15 C -0.069 4.069 16 C -0.179 4.179 17 C -0.154 4.154 18 H 0.149 0.851 19 C -0.213 4.213 20 C 0.150 3.850 21 F -0.140 7.140 22 F -0.146 7.146 23 C -0.053 4.053 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.048 0.952 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.444 -11.355 -2.613 17.791 hybrid contribution 0.283 0.385 -0.986 1.095 sum 13.727 -10.971 -3.599 17.937 Atomic orbital electron populations 1.69903 1.06314 1.26928 1.50970 1.24982 0.94654 0.99056 0.94397 0.86828 0.80031 0.83466 0.77856 1.20741 1.22635 1.18805 1.20995 0.88796 0.94441 1.50968 0.90997 1.19172 0.95936 0.91259 0.93686 0.94701 1.22024 0.92645 1.00230 1.01099 1.21661 0.98079 0.95283 1.00809 1.22015 0.98491 0.95399 0.90860 1.62231 1.10559 1.15832 1.37537 1.22182 0.99441 0.87996 0.97249 1.22040 1.02339 0.91423 1.02141 1.23726 0.98002 0.97086 0.96573 0.85115 1.24396 0.93272 1.01051 1.02624 1.20184 0.83690 0.90835 0.90305 1.93008 1.95003 1.69917 1.56109 1.93011 1.59898 1.70382 1.91273 1.22125 0.83775 0.99614 0.99790 0.92707 0.92608 0.93575 0.91844 0.92830 0.91938 0.95128 0.91296 0.90582 0.89368 0.90544 0.86076 0.85998 0.95184 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 2 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 3 Si 0.89 22.07 24.36 -169.99 -4.14 17.93 16 4 H -0.28 -6.80 6.89 56.52 0.39 -6.41 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 7 C -0.51 -14.19 9.14 -34.44 -0.31 -14.50 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.02 0.43 1.85 -91.69 -0.17 0.26 16 10 H 0.03 0.86 7.20 -51.93 -0.37 0.49 16 11 C -0.12 -2.63 4.74 -26.60 -0.13 -2.76 16 12 C -0.12 -2.12 6.09 -26.65 -0.16 -2.29 16 13 C 0.06 0.96 5.05 -3.84 -0.02 0.94 16 14 N -0.54 -8.95 4.86 -234.67 -1.14 -10.09 16 15 C 0.06 0.78 5.32 -3.82 -0.02 0.76 16 16 C -0.14 -1.67 4.78 -26.73 -0.13 -1.80 16 17 C -0.13 -1.30 5.72 -90.62 -0.52 -1.81 16 18 H 0.13 1.07 8.07 -51.93 -0.42 0.65 16 19 C -0.18 -1.48 10.22 -26.73 -0.27 -1.76 16 20 C 0.19 2.02 5.20 -26.73 -0.14 1.88 16 21 F -0.16 -2.04 16.47 2.25 0.04 -2.00 16 22 F -0.17 -1.92 17.60 2.25 0.04 -1.88 16 23 C 0.07 1.43 4.06 -3.84 -0.02 1.41 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.05 1.05 3.37 -51.93 -0.17 0.88 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.88 8.06 -51.92 -0.42 0.46 16 30 H 0.03 0.48 6.75 -51.93 -0.35 0.13 16 31 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.13 6.51 -51.93 -0.34 0.79 16 34 H 0.08 0.99 5.60 -51.93 -0.29 0.70 16 35 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.03 0.58 6.61 -51.92 -0.34 0.24 16 38 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 LS Contribution 298.89 15.07 4.50 4.50 Total: -1.00 -29.96 298.89 -7.59 -37.55 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.68 Total: -1.54 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -1.98 Total: -17.73 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.37 Total: -36.83 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.08 Total: -3.89 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.96 -7.59 -37.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691206586.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.201 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds