Wall clock time and date at job start Mon Mar 30 2020 06:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00142 * 2 1 4 4 H 1.48498 * 109.46951 * 269.99458 * 3 2 1 5 5 H 1.48496 * 109.47609 * 29.99728 * 3 2 1 6 6 H 1.48502 * 109.47134 * 150.00003 * 3 2 1 7 7 C 1.37881 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00039 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00308 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.50103 * 59.92085 * 9 7 2 11 11 C 1.53123 * 109.53518 * 299.83015 * 9 7 2 12 12 C 1.53124 * 109.16220 * 182.38267 * 11 9 7 13 13 C 1.53035 * 109.27475 * 57.64849 * 12 11 9 14 14 N 1.46846 * 109.52744 * 300.82106 * 13 12 11 15 15 C 1.46898 * 111.00056 * 185.84176 * 14 13 12 16 16 C 1.53005 * 109.47201 * 293.95628 * 15 14 13 17 17 C 1.52998 * 109.47119 * 179.97438 * 16 15 14 18 18 H 1.08998 * 115.55010 * 29.33005 * 17 16 15 19 19 C 1.53005 * 117.49767 * 174.99875 * 17 16 15 20 20 C 1.53000 * 59.99892 * 107.49069 * 19 17 16 21 21 F 1.39899 * 117.49812 * 252.50873 * 20 19 17 22 22 F 1.39901 * 117.49819 * 107.48938 * 20 19 17 23 23 C 1.46846 * 111.19780 * 61.74478 * 14 13 12 24 24 H 0.97000 * 119.99443 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.51952 * 302.28527 * 11 9 7 26 26 H 1.08995 * 109.52691 * 62.47496 * 11 9 7 27 27 H 1.08993 * 109.50112 * 297.71243 * 12 11 9 28 28 H 1.08992 * 109.50394 * 177.58991 * 12 11 9 29 29 H 1.09008 * 109.45841 * 180.80263 * 13 12 11 30 30 H 1.09003 * 109.46290 * 60.84246 * 13 12 11 31 31 H 1.08998 * 109.47354 * 53.94952 * 15 14 13 32 32 H 1.09001 * 109.47115 * 173.95752 * 15 14 13 33 33 H 1.09006 * 109.46722 * 299.99965 * 16 15 14 34 34 H 1.09003 * 109.47422 * 59.99740 * 16 15 14 35 35 H 1.08995 * 117.49818 * 214.98162 * 19 17 16 36 36 H 1.09003 * 117.49647 * 359.97142 * 19 17 16 37 37 H 1.09009 * 109.46169 * 58.27021 * 23 14 13 38 38 H 1.08995 * 109.46611 * 178.23876 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1943 0.0011 10 1 3.8750 -0.6791 0.8902 11 6 4.0240 -0.4768 -1.2507 12 6 5.5541 -0.5338 -1.2718 13 6 6.0056 -1.9956 -1.2344 14 7 5.4907 -2.6374 -0.0181 15 6 6.0184 -4.0012 0.1212 16 6 5.4753 -4.8764 -1.0101 17 6 6.0255 -6.2967 -0.8653 18 1 6.2480 -6.6130 0.1537 19 6 5.5056 -7.3581 -1.8370 20 6 6.9308 -6.8208 -1.9818 21 9 7.1921 -5.9648 -3.0570 22 9 7.9813 -7.6695 -1.6168 23 6 4.0223 -2.6368 0.0016 24 1 -0.4849 0.8401 -0.0004 25 1 3.6290 -0.9684 -2.1398 26 1 3.6986 0.5633 -1.2335 27 1 5.9498 -0.0084 -0.4027 28 1 5.9233 -0.0621 -2.1822 29 1 7.0948 -2.0393 -1.2348 30 1 5.6211 -2.5170 -2.1109 31 1 7.1070 -3.9765 0.0707 32 1 5.7084 -4.4145 1.0811 33 1 4.3866 -4.9011 -0.9597 34 1 5.7852 -4.4632 -1.9700 35 1 5.3864 -8.3728 -1.4572 36 1 4.7712 -7.0447 -2.5790 37 1 3.6470 -3.1552 -0.8808 38 1 3.6709 -3.1462 0.8988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691206586.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:37 Heat of formation + Delta-G solvation = -93.513656 kcal Electronic energy + Delta-G solvation = -19944.757185 eV Core-core repulsion = 16650.681023 eV Total energy + Delta-G solvation = -3294.076163 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.67022 -48.36598 -40.27507 -37.87050 -35.68843 -34.06405 -32.00705 -30.36955 -26.90881 -25.97247 -23.52741 -23.23237 -22.66374 -21.96666 -20.14186 -18.83887 -18.68488 -17.78152 -17.16266 -16.93764 -16.02353 -15.86789 -15.37557 -15.22341 -15.17459 -14.98749 -14.71423 -14.62468 -14.52216 -14.00346 -13.90753 -13.55451 -13.22586 -12.95034 -12.67301 -12.50568 -12.33958 -12.01168 -11.88896 -11.77760 -11.50757 -11.36484 -10.98856 -10.81527 -10.75535 -10.59314 -9.10355 -8.29142 -6.31894 1.30738 1.37149 1.48032 2.06702 2.16935 2.33945 3.05379 3.07234 3.27378 3.43201 3.63720 4.02964 4.05850 4.14144 4.18149 4.31356 4.35707 4.51068 4.57590 4.62304 4.66618 4.75520 4.81622 4.85752 4.93019 4.97153 5.01690 5.07155 5.17548 5.27418 5.29757 5.48138 5.65758 5.75151 6.18590 6.31793 6.37907 6.75762 7.34029 8.87611 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.037047 B = 0.004623 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.607314 B = 6055.182187 C = 6402.168099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.014 3.986 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.300 1.300 6 H -0.249 1.249 7 C -0.516 4.516 8 H 0.035 0.965 9 C 0.017 3.983 10 H 0.023 0.977 11 C -0.122 4.122 12 C -0.116 4.116 13 C 0.061 3.939 14 N -0.547 5.547 15 C 0.060 3.940 16 C -0.134 4.134 17 C -0.130 4.130 18 H 0.150 0.850 19 C -0.158 4.158 20 C 0.166 3.834 21 F -0.175 7.175 22 F -0.172 7.172 23 C 0.087 3.913 24 H 0.265 0.735 25 H 0.048 0.952 26 H 0.033 0.967 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.031 0.969 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.145 0.855 36 H 0.125 0.875 37 H 0.025 0.975 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.733 -12.147 -3.140 20.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.195 1.195 5 H -0.228 1.228 6 H -0.173 1.173 7 C -0.554 4.554 8 H 0.054 0.946 9 C -0.003 4.003 10 H 0.041 0.959 11 C -0.160 4.160 12 C -0.154 4.154 13 C -0.067 4.067 14 N -0.270 5.270 15 C -0.067 4.067 16 C -0.172 4.172 17 C -0.149 4.149 18 H 0.168 0.832 19 C -0.195 4.195 20 C 0.130 3.870 21 F -0.156 7.156 22 F -0.152 7.152 23 C -0.040 4.040 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.163 0.837 36 H 0.143 0.857 37 H 0.043 0.957 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.806 -11.762 -2.755 19.894 hybrid contribution -0.474 0.409 -0.933 1.123 sum 15.332 -11.353 -3.688 19.431 Atomic orbital electron populations 1.70046 1.08128 1.27911 1.53034 1.25811 0.95344 1.02840 0.94315 0.85829 0.79105 0.78901 0.78506 1.19504 1.22826 1.17283 1.21338 0.91453 0.92977 1.49666 0.94623 1.19106 0.92924 0.94058 0.94162 0.95895 1.21923 0.95835 0.98783 0.99462 1.21639 0.94700 0.96885 1.02132 1.22064 0.99974 0.94115 0.90549 1.62164 1.08262 1.18377 1.38167 1.22271 1.00213 0.86189 0.98076 1.21879 1.01501 0.92735 1.01133 1.23707 0.97553 0.96162 0.97493 0.83236 1.24537 0.91359 1.01912 1.01699 1.20504 0.84450 0.91550 0.90541 1.92971 1.95171 1.70529 1.56919 1.92993 1.60395 1.70527 1.91321 1.21795 0.86075 0.96811 0.99364 0.92639 0.93350 0.94906 0.91897 0.90251 0.89224 0.95035 0.89626 0.89684 0.90629 0.91523 0.83654 0.85689 0.95665 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 2 C 0.01 0.80 5.45 84.65 0.46 1.26 16 3 Si 0.95 45.74 24.36 68.60 1.67 47.41 16 4 H -0.27 -12.36 6.89 99.48 0.69 -11.68 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.25 -11.29 6.53 99.48 0.65 -10.64 16 7 C -0.52 -29.26 9.14 25.60 0.23 -29.03 16 8 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16 9 C 0.02 0.77 1.85 -11.49 -0.02 0.75 16 10 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 11 C -0.12 -5.10 4.74 30.68 0.15 -4.95 16 12 C -0.12 -3.74 6.09 30.65 0.19 -3.56 16 13 C 0.06 1.75 5.05 86.33 0.44 2.18 16 14 N -0.55 -16.95 4.86 -896.35 -4.35 -21.31 16 15 C 0.06 1.40 5.32 86.31 0.46 1.86 16 16 C -0.13 -2.90 4.78 30.60 0.15 -2.76 16 17 C -0.13 -2.17 5.72 -10.79 -0.06 -2.23 16 18 H 0.15 1.95 8.07 -2.39 -0.02 1.93 16 19 C -0.16 -2.25 10.22 30.60 0.31 -1.94 16 20 C 0.17 3.26 5.20 30.59 0.16 3.42 16 21 F -0.18 -4.23 16.47 44.97 0.74 -3.49 16 22 F -0.17 -3.68 17.60 44.97 0.79 -2.88 16 23 C 0.09 3.33 4.06 86.32 0.35 3.68 16 24 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.03 1.44 3.37 -2.39 -0.01 1.43 16 27 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.09 2.15 8.06 -2.38 -0.02 2.13 16 30 H 0.03 0.91 6.75 -2.39 -0.02 0.90 16 31 H 0.09 1.76 8.06 -2.39 -0.02 1.74 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.85 6.51 -2.38 -0.02 1.83 16 34 H 0.07 1.60 5.60 -2.39 -0.01 1.58 16 35 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.03 0.98 6.61 -2.38 -0.02 0.96 16 38 H 0.06 2.38 8.12 -2.39 -0.02 2.36 16 Total: -1.00 -65.80 298.89 2.92 -62.88 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.97 Total: 8.05 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: 2.81 Total: -31.30 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -4.06 Total: -80.66 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 1.53 Total: -6.38 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.67 Total: 47.41 kcal Total: -65.80 2.92 -62.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691206586.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.636 kcal (2) G-P(sol) polarization free energy of solvation -65.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds