Wall clock time and date at job start Mon Mar 30 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00274 * 2 1 4 4 H 1.48505 * 109.47437 * 239.99879 * 3 2 1 5 5 H 1.48496 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46998 * 120.00292 * 3 2 1 7 7 C 1.37876 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00304 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.53144 * 59.90249 * 9 7 2 11 11 C 1.53203 * 109.49061 * 299.82825 * 9 7 2 12 12 C 1.53123 * 109.11533 * 182.41949 * 11 9 7 13 13 C 1.53039 * 109.31189 * 57.63615 * 12 11 9 14 14 N 1.46856 * 109.51787 * 300.79882 * 13 12 11 15 15 C 1.46902 * 110.99619 * 185.84053 * 14 13 12 16 16 C 1.52998 * 109.47263 * 66.04595 * 15 14 13 17 17 C 1.53000 * 109.47139 * 179.97438 * 16 15 14 18 18 H 1.08999 * 115.54607 * 29.42088 * 17 16 15 19 19 C 1.53005 * 117.49913 * 243.74929 * 17 16 15 20 20 C 1.53002 * 117.49616 * 175.08957 * 17 16 15 21 21 F 1.39903 * 117.49522 * 214.97735 * 20 17 16 22 22 F 1.39896 * 117.49874 * 0.02562 * 20 17 16 23 23 C 1.46846 * 111.19871 * 61.74404 * 14 13 12 24 24 H 0.97008 * 119.99478 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.57907 * 62.50740 * 11 9 7 26 26 H 1.08997 * 109.51203 * 302.29004 * 11 9 7 27 27 H 1.09002 * 109.50371 * 297.67165 * 12 11 9 28 28 H 1.09003 * 109.50070 * 177.59325 * 12 11 9 29 29 H 1.09000 * 109.46148 * 60.81334 * 13 12 11 30 30 H 1.09001 * 109.46317 * 180.79820 * 13 12 11 31 31 H 1.09000 * 109.47067 * 186.04565 * 15 14 13 32 32 H 1.08999 * 109.46871 * 306.04434 * 15 14 13 33 33 H 1.09000 * 109.47054 * 299.99977 * 16 15 14 34 34 H 1.09001 * 109.46852 * 59.99845 * 16 15 14 35 35 H 1.09000 * 117.49662 * 359.97438 * 19 17 16 36 36 H 1.08995 * 117.49933 * 145.02227 * 19 17 16 37 37 H 1.09004 * 109.46012 * 58.27074 * 23 14 13 38 38 H 1.08997 * 109.46257 * 178.24394 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6222 -2.5570 -0.8891 11 6 0.3737 -2.5830 1.2527 12 6 -0.3413 -3.9369 1.2747 13 6 0.6987 -5.0591 1.2372 14 7 1.5109 -4.9348 0.0200 15 6 2.4279 -6.0740 -0.1194 16 6 1.6207 -7.3533 -0.3494 17 6 2.5758 -8.5396 -0.4953 18 1 3.5187 -8.4531 0.0447 19 6 2.5960 -9.2691 -1.8400 20 6 1.9571 -9.9336 -0.6179 21 9 2.6454 -10.9998 -0.0290 22 9 0.5615 -10.0258 -0.5886 23 6 2.2446 -3.6630 -0.0012 24 1 -0.4850 0.8402 -0.0004 25 1 -0.3647 -1.7814 1.2360 26 1 0.9978 -2.4862 2.1411 27 1 -0.9950 -4.0174 0.4063 28 1 -0.9342 -4.0205 2.1856 29 1 1.3434 -4.9862 2.1131 30 1 0.1919 -6.0241 1.2385 31 1 3.0907 -5.9051 -0.9681 32 1 3.0204 -6.1768 0.7896 33 1 0.9579 -7.5222 0.4993 34 1 1.0281 -7.2504 -1.2584 35 1 1.9285 -8.9041 -2.6207 36 1 3.5521 -9.6629 -2.1847 37 1 2.8821 -3.5967 0.8805 38 1 2.8606 -3.6140 -0.8991 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691206587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:39 Heat of formation + Delta-G solvation = -83.181906 kcal Electronic energy + Delta-G solvation = -19498.446278 eV Core-core repulsion = 16204.818133 eV Total energy + Delta-G solvation = -3293.628144 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.79688 -47.48052 -38.50422 -36.94238 -33.93231 -32.00232 -30.08039 -29.09630 -24.96613 -24.14814 -22.73246 -21.73360 -21.41676 -20.44921 -18.59708 -17.82158 -16.90202 -16.32433 -16.02055 -15.05230 -14.95253 -14.55517 -14.15657 -13.99007 -13.85907 -13.68802 -13.45068 -13.17432 -12.75627 -12.55744 -12.32743 -11.81089 -11.66788 -11.47012 -11.24988 -10.92822 -10.73968 -10.69344 -10.45191 -10.07096 -9.98856 -9.82787 -9.45673 -9.00853 -8.70443 -8.29463 -7.68434 -5.96719 -4.03056 2.85344 2.91343 3.32406 3.37338 3.39481 3.96115 4.14034 4.40152 4.44705 4.60841 4.96410 5.20548 5.26313 5.32979 5.36931 5.52740 5.58039 5.67183 5.82162 5.82617 6.06580 6.09618 6.19518 6.32410 6.41613 6.51423 6.72407 6.76178 6.97057 7.22726 7.40407 7.65888 7.75436 7.81874 8.08947 8.18132 8.48615 9.00785 9.61164 11.09252 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.045624 B = 0.003725 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.570113 B = 7514.596083 C = 7849.748386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.052 0.948 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.060 3.940 14 N -0.539 5.539 15 C 0.059 3.941 16 C -0.091 4.091 17 C -0.139 4.139 18 H 0.129 0.871 19 C -0.172 4.172 20 C 0.187 3.813 21 F -0.166 7.166 22 F -0.160 7.160 23 C 0.068 3.932 24 H 0.260 0.740 25 H 0.090 0.910 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.022 0.978 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.018 0.982 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.770 -16.655 -0.929 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.068 4.068 14 N -0.264 5.264 15 C -0.069 4.069 16 C -0.128 4.128 17 C -0.159 4.159 18 H 0.147 0.853 19 C -0.210 4.210 20 C 0.150 3.850 21 F -0.146 7.146 22 F -0.140 7.140 23 C -0.058 4.058 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.037 0.963 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.271 -16.558 -1.307 16.929 hybrid contribution 0.983 0.634 0.860 1.452 sum 4.254 -15.924 -0.448 16.488 Atomic orbital electron populations 1.69885 1.05841 1.26424 1.50535 1.24930 0.94826 0.98926 0.95120 0.86691 0.79618 0.83312 0.78538 1.20303 1.21316 1.20405 1.21114 0.92772 0.90715 1.50892 0.92926 1.18678 0.92633 0.90255 0.94855 0.94750 1.21667 1.00011 0.94721 0.98461 1.21679 0.97207 0.96483 1.00190 1.22093 0.95772 0.98820 0.90135 1.61980 1.24243 1.02243 1.37889 1.21998 0.94329 0.90397 1.00213 1.21251 0.96694 0.91082 1.03806 1.23769 1.01938 0.90857 0.99345 0.85338 1.24469 1.03655 1.00177 0.92709 1.20165 0.74621 0.86532 1.03686 1.93011 1.77988 1.58297 1.85334 1.93021 1.27342 1.96644 1.96993 1.22307 0.96409 0.88403 0.98727 0.93003 0.89148 0.95214 0.92085 0.93580 0.95946 0.92202 0.90864 0.95440 0.90603 0.89972 0.85800 0.86194 0.96330 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 11.36 55.43 0.63 -24.63 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.07 8.56 -34.44 -0.29 -14.36 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.36 2.26 -91.65 -0.21 1.15 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.61 5.03 -26.56 -0.13 -2.74 16 12 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 13 C 0.06 1.04 5.29 -3.83 -0.02 1.01 16 14 N -0.54 -9.64 4.66 -234.67 -1.09 -10.73 16 15 C 0.06 0.82 4.92 -3.82 -0.02 0.80 16 16 C -0.09 -1.06 5.07 -26.73 -0.14 -1.20 16 17 C -0.14 -1.33 5.72 -90.62 -0.52 -1.85 16 18 H 0.13 1.09 8.08 -51.93 -0.42 0.67 16 19 C -0.17 -1.39 10.15 -26.69 -0.27 -1.66 16 20 C 0.19 1.98 5.21 -26.69 -0.14 1.84 16 21 F -0.17 -1.91 17.60 2.25 0.04 -1.87 16 22 F -0.16 -1.97 17.14 2.25 0.04 -1.93 16 23 C 0.07 1.43 4.68 -3.84 -0.02 1.41 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.91 6.22 -51.93 -0.32 0.59 16 31 H 0.07 0.97 7.98 -51.93 -0.41 0.56 16 32 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.08 0.94 6.44 -51.93 -0.33 0.60 16 34 H 0.08 1.00 7.87 -51.93 -0.41 0.59 16 35 H 0.12 0.92 8.03 -51.93 -0.42 0.50 16 36 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 1.21 8.01 -51.93 -0.42 0.80 16 LS Contribution 309.89 15.07 4.67 4.67 Total: -1.00 -28.38 309.89 -8.72 -37.10 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.98 Total: -2.31 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -2.01 Total: -16.42 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.46 Total: -35.36 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.08 Total: -3.80 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.38 -8.72 -37.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691206587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.079 kcal (2) G-P(sol) polarization free energy of solvation -28.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds