Wall clock time and date at job start Mon Mar 30 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00274 * 2 1 4 4 H 1.48505 * 109.47437 * 239.99879 * 3 2 1 5 5 H 1.48496 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46998 * 120.00292 * 3 2 1 7 7 C 1.37876 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00304 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.53144 * 59.90249 * 9 7 2 11 11 C 1.53203 * 109.49061 * 299.82825 * 9 7 2 12 12 C 1.53123 * 109.11533 * 182.41949 * 11 9 7 13 13 C 1.53039 * 109.31189 * 57.63615 * 12 11 9 14 14 N 1.46856 * 109.51787 * 300.79882 * 13 12 11 15 15 C 1.46902 * 110.99619 * 185.84053 * 14 13 12 16 16 C 1.52998 * 109.47263 * 66.04595 * 15 14 13 17 17 C 1.53000 * 109.47139 * 179.97438 * 16 15 14 18 18 H 1.08999 * 115.54607 * 29.42088 * 17 16 15 19 19 C 1.53005 * 117.49913 * 243.74929 * 17 16 15 20 20 C 1.53002 * 117.49616 * 175.08957 * 17 16 15 21 21 F 1.39903 * 117.49522 * 214.97735 * 20 17 16 22 22 F 1.39896 * 117.49874 * 0.02562 * 20 17 16 23 23 C 1.46846 * 111.19871 * 61.74404 * 14 13 12 24 24 H 0.97008 * 119.99478 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.57907 * 62.50740 * 11 9 7 26 26 H 1.08997 * 109.51203 * 302.29004 * 11 9 7 27 27 H 1.09002 * 109.50371 * 297.67165 * 12 11 9 28 28 H 1.09003 * 109.50070 * 177.59325 * 12 11 9 29 29 H 1.09000 * 109.46148 * 60.81334 * 13 12 11 30 30 H 1.09001 * 109.46317 * 180.79820 * 13 12 11 31 31 H 1.09000 * 109.47067 * 186.04565 * 15 14 13 32 32 H 1.08999 * 109.46871 * 306.04434 * 15 14 13 33 33 H 1.09000 * 109.47054 * 299.99977 * 16 15 14 34 34 H 1.09001 * 109.46852 * 59.99845 * 16 15 14 35 35 H 1.09000 * 117.49662 * 359.97438 * 19 17 16 36 36 H 1.08995 * 117.49933 * 145.02227 * 19 17 16 37 37 H 1.09004 * 109.46012 * 58.27074 * 23 14 13 38 38 H 1.08997 * 109.46257 * 178.24394 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6222 -2.5570 -0.8891 11 6 0.3737 -2.5830 1.2527 12 6 -0.3413 -3.9369 1.2747 13 6 0.6987 -5.0591 1.2372 14 7 1.5109 -4.9348 0.0200 15 6 2.4279 -6.0740 -0.1194 16 6 1.6207 -7.3533 -0.3494 17 6 2.5758 -8.5396 -0.4953 18 1 3.5187 -8.4531 0.0447 19 6 2.5960 -9.2691 -1.8400 20 6 1.9571 -9.9336 -0.6179 21 9 2.6454 -10.9998 -0.0290 22 9 0.5615 -10.0258 -0.5886 23 6 2.2446 -3.6630 -0.0012 24 1 -0.4850 0.8402 -0.0004 25 1 -0.3647 -1.7814 1.2360 26 1 0.9978 -2.4862 2.1411 27 1 -0.9950 -4.0174 0.4063 28 1 -0.9342 -4.0205 2.1856 29 1 1.3434 -4.9862 2.1131 30 1 0.1919 -6.0241 1.2385 31 1 3.0907 -5.9051 -0.9681 32 1 3.0204 -6.1768 0.7896 33 1 0.9579 -7.5222 0.4993 34 1 1.0281 -7.2504 -1.2584 35 1 1.9285 -8.9041 -2.6207 36 1 3.5521 -9.6629 -2.1847 37 1 2.8821 -3.5967 0.8805 38 1 2.8606 -3.6140 -0.8991 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691206587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:39 Heat of formation + Delta-G solvation = -98.653621 kcal Electronic energy + Delta-G solvation = -19499.117181 eV Core-core repulsion = 16204.818133 eV Total energy + Delta-G solvation = -3294.299048 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.62290 -48.32394 -39.94482 -37.88759 -35.62694 -33.71075 -31.76075 -30.44110 -26.90552 -25.46924 -23.51703 -23.33766 -22.65502 -21.50649 -20.33876 -18.66919 -18.41312 -17.64836 -16.95956 -16.65699 -16.14132 -16.13158 -15.34776 -15.02681 -14.99189 -14.88081 -14.57066 -14.45939 -14.14789 -14.05203 -13.91701 -13.23506 -12.94610 -12.81780 -12.60122 -12.51052 -12.39823 -12.24228 -11.84980 -11.70029 -11.36775 -11.31181 -10.97876 -10.64394 -10.62996 -10.34910 -9.11297 -8.06374 -6.20662 1.43038 1.44132 1.51764 2.08501 2.20564 2.44217 3.00814 3.20670 3.39096 3.50634 3.66746 4.09132 4.12405 4.26298 4.28137 4.40217 4.55265 4.61524 4.66262 4.71832 4.77098 4.79475 4.90744 4.93176 5.00579 5.09316 5.11228 5.20953 5.31043 5.41630 5.54053 5.64915 5.98415 6.13868 6.22779 6.39813 6.47622 6.92323 7.47294 8.98091 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.045624 B = 0.003725 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.570113 B = 7514.596083 C = 7849.748386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.052 0.948 9 C 0.051 3.949 10 H -0.003 1.003 11 C -0.104 4.104 12 C -0.112 4.112 13 C 0.064 3.936 14 N -0.550 5.550 15 C 0.061 3.939 16 C -0.082 4.082 17 C -0.137 4.137 18 H 0.144 0.856 19 C -0.149 4.149 20 C 0.164 3.836 21 F -0.174 7.174 22 F -0.175 7.175 23 C 0.082 3.918 24 H 0.260 0.740 25 H 0.056 0.944 26 H 0.021 0.979 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.025 0.975 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.015 0.985 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.080 -17.763 -1.030 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.071 0.929 9 C 0.032 3.968 10 H 0.015 0.985 11 C -0.142 4.142 12 C -0.150 4.150 13 C -0.064 4.064 14 N -0.275 5.275 15 C -0.067 4.067 16 C -0.120 4.120 17 C -0.156 4.156 18 H 0.161 0.839 19 C -0.187 4.187 20 C 0.127 3.873 21 F -0.155 7.155 22 F -0.155 7.155 23 C -0.045 4.045 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.162 0.838 37 H 0.033 0.967 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.589 -17.687 -1.409 18.327 hybrid contribution 0.552 0.962 0.882 1.417 sum 5.141 -16.724 -0.528 17.505 Atomic orbital electron populations 1.70037 1.07215 1.27096 1.51178 1.25724 0.95645 1.02343 0.94796 0.85679 0.78411 0.79127 0.78827 1.19546 1.21052 1.19721 1.21516 0.93033 0.92198 1.50863 0.92933 1.18614 0.93064 0.91434 0.93677 0.98490 1.21476 0.99086 0.96228 0.97440 1.21595 0.97623 0.94965 1.00796 1.22074 0.95240 0.99019 0.90043 1.61903 1.25048 1.02208 1.38310 1.22072 0.94090 0.89535 1.01004 1.21111 0.96715 0.90824 1.03363 1.23714 1.01734 0.89255 1.00915 0.83872 1.24620 1.04406 0.97834 0.91815 1.20523 0.74030 0.86732 1.05969 1.92990 1.78032 1.58738 1.85721 1.92985 1.28638 1.96724 1.97190 1.21966 0.95227 0.88738 0.98592 0.93109 0.92542 0.96002 0.93129 0.91468 0.95661 0.89360 0.90028 0.94529 0.91170 0.90412 0.85013 0.83821 0.96673 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.47 11.36 21.45 0.24 -53.23 16 2 C 0.01 0.76 5.30 84.66 0.45 1.21 16 3 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -29.81 8.56 25.60 0.22 -29.59 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.05 2.59 2.26 -11.46 -0.03 2.57 16 10 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 11 C -0.10 -5.02 5.03 30.70 0.15 -4.87 16 12 C -0.11 -4.31 6.09 30.65 0.19 -4.13 16 13 C 0.06 2.10 5.29 86.32 0.46 2.56 16 14 N -0.55 -18.89 4.66 -896.35 -4.17 -23.07 16 15 C 0.06 1.53 4.92 86.30 0.42 1.95 16 16 C -0.08 -1.72 5.07 30.59 0.16 -1.57 16 17 C -0.14 -2.22 5.72 -10.79 -0.06 -2.28 16 18 H 0.14 1.93 8.08 -2.39 -0.02 1.91 16 19 C -0.15 -1.93 10.15 30.62 0.31 -1.62 16 20 C 0.16 3.13 5.21 30.62 0.16 3.29 16 21 F -0.17 -3.72 17.60 44.97 0.79 -2.93 16 22 F -0.17 -4.09 17.14 44.97 0.77 -3.32 16 23 C 0.08 3.41 4.68 86.32 0.40 3.81 16 24 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 25 H 0.06 3.09 6.17 -2.39 -0.01 3.08 16 26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 2.44 6.22 -2.39 -0.01 2.43 16 31 H 0.08 1.94 7.98 -2.39 -0.02 1.92 16 32 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 33 H 0.07 1.55 6.44 -2.39 -0.02 1.54 16 34 H 0.08 1.71 7.87 -2.39 -0.02 1.69 16 35 H 0.13 1.54 8.03 -2.39 -0.02 1.52 16 36 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.06 2.45 8.01 -2.39 -0.02 2.43 16 Total: -1.00 -62.26 309.89 3.52 -58.73 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.03 Total: 6.83 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 2.83 Total: -28.67 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -3.93 Total: -76.29 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 1.56 Total: -6.25 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -62.26 3.52 -58.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691206587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.922 kcal (2) G-P(sol) polarization free energy of solvation -62.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds