Wall clock time and date at job start Mon Mar 30 2020 06:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00180 * 2 1 4 4 H 1.48505 * 109.46973 * 269.99676 * 3 2 1 5 5 H 1.48502 * 109.47380 * 29.99765 * 3 2 1 6 6 H 1.48497 * 109.47463 * 149.99827 * 3 2 1 7 7 C 1.37884 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99848 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99608 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47027 * 180.02562 * 9 7 2 11 11 C 1.53113 * 109.52360 * 174.99954 * 10 9 7 12 12 C 1.53043 * 109.27906 * 177.62237 * 11 10 9 13 13 N 1.46848 * 109.52215 * 300.82172 * 12 11 10 14 14 C 1.46898 * 110.99765 * 185.83900 * 13 12 11 15 15 C 1.53006 * 109.47006 * 169.99646 * 14 13 12 16 16 H 1.08998 * 115.54488 * 29.33289 * 15 14 13 17 17 C 1.52994 * 117.49772 * 174.99905 * 15 14 13 18 18 C 1.52994 * 60.00090 * 107.49345 * 17 15 14 19 19 F 1.39900 * 117.49787 * 252.51279 * 18 17 15 20 20 F 1.39896 * 117.50556 * 107.48796 * 18 17 15 21 21 C 1.46844 * 111.19971 * 61.73818 * 13 12 11 22 22 C 1.53042 * 109.52548 * 298.26097 * 21 13 12 23 23 H 0.96996 * 120.00099 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47420 * 60.00376 * 9 7 2 25 25 H 1.08998 * 109.47449 * 299.99691 * 9 7 2 26 26 H 1.08998 * 109.52170 * 54.86776 * 10 9 7 27 27 H 1.09002 * 109.50807 * 57.68455 * 11 10 9 28 28 H 1.08997 * 109.53546 * 297.58335 * 11 10 9 29 29 H 1.08996 * 109.46221 * 180.80466 * 12 11 10 30 30 H 1.08995 * 109.45093 * 60.83157 * 12 11 10 31 31 H 1.09001 * 109.47062 * 49.99900 * 14 13 12 32 32 H 1.08993 * 109.47084 * 289.99347 * 14 13 12 33 33 H 1.09001 * 117.49513 * 214.98214 * 17 15 14 34 34 H 1.09000 * 117.50338 * 359.97438 * 17 15 14 35 35 H 1.08998 * 109.45974 * 58.27652 * 21 13 12 36 36 H 1.09003 * 109.46302 * 178.23916 * 21 13 12 37 37 H 1.09005 * 109.49739 * 299.23563 * 22 21 13 38 38 H 1.08995 * 109.53521 * 179.14196 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5474 -2.6399 -0.1242 12 6 6.0563 -4.0820 -0.0641 13 7 5.6504 -4.6930 1.2080 14 6 6.2383 -6.0305 1.3609 15 6 6.0036 -6.5307 2.7877 16 1 5.1046 -6.1544 3.2757 17 6 6.4402 -7.9598 3.1159 18 6 7.2348 -6.7724 3.6631 19 9 8.4892 -6.5190 3.0977 20 9 7.1210 -6.4933 5.0292 21 6 4.1879 -4.7439 1.3298 22 6 3.6232 -3.3216 1.3113 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6802 0.8911 25 1 3.8752 -0.6806 -0.8888 26 1 3.5858 -3.1769 -0.8395 27 1 5.9811 -2.0666 0.6952 28 1 5.8361 -2.1914 -1.0748 29 1 7.1437 -4.0867 -0.1386 30 1 5.6331 -4.6510 -0.8918 31 1 7.3094 -5.9811 1.1648 32 1 5.7707 -6.7158 0.6541 33 1 5.8286 -8.5236 3.8204 34 1 6.8943 -8.5439 2.3154 35 1 3.7735 -5.3101 0.4956 36 1 3.9182 -5.2296 2.2676 37 1 4.0266 -2.7590 2.1533 38 1 2.5365 -3.3599 1.3863 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691228585.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:27 Heat of formation + Delta-G solvation = -81.660238 kcal Electronic energy + Delta-G solvation = -19605.916857 eV Core-core repulsion = 16312.354697 eV Total energy + Delta-G solvation = -3293.562160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.79530 -47.47821 -39.06902 -36.77783 -34.22523 -32.17940 -30.49358 -28.98156 -26.16063 -23.30732 -22.94722 -22.76456 -20.92720 -20.35596 -19.01533 -17.98578 -16.89799 -16.66773 -16.09345 -15.77753 -14.64199 -14.47928 -14.27739 -14.14400 -13.83807 -13.70627 -13.61353 -13.28298 -13.08814 -12.85402 -12.55447 -11.91864 -11.86095 -11.67122 -11.50524 -10.99624 -10.85676 -10.73587 -10.54385 -10.17266 -10.04105 -9.70653 -9.58664 -9.27052 -8.99316 -8.50117 -8.20710 -6.01283 -3.98134 2.82407 2.92624 3.33042 3.40791 3.45405 3.66849 4.11118 4.35905 4.44280 4.48603 4.92680 5.06653 5.15512 5.20505 5.30707 5.32759 5.39616 5.47467 5.55528 5.65294 5.73427 5.77862 5.92157 6.03339 6.15987 6.32786 6.46567 6.55735 6.84982 6.95087 7.03731 7.19004 7.25495 7.33811 7.52613 7.84220 8.57725 9.03766 9.62243 11.12173 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.035675 B = 0.004004 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.676277 B = 6991.936860 C = 7097.602499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.073 4.073 11 C -0.115 4.115 12 C 0.061 3.939 13 N -0.536 5.536 14 C 0.079 3.921 15 C -0.138 4.138 16 H 0.136 0.864 17 C -0.176 4.176 18 C 0.196 3.804 19 F -0.160 7.160 20 F -0.162 7.162 21 C 0.052 3.948 22 C -0.101 4.101 23 H 0.262 0.738 24 H 0.016 0.984 25 H 0.010 0.990 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.062 -15.379 4.113 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.092 4.092 11 C -0.153 4.153 12 C -0.067 4.067 13 N -0.261 5.261 14 C -0.049 4.049 15 C -0.157 4.157 16 H 0.154 0.846 17 C -0.214 4.214 18 C 0.160 3.840 19 F -0.141 7.141 20 F -0.143 7.143 21 C -0.075 4.075 22 C -0.139 4.139 23 H 0.071 0.929 24 H 0.035 0.965 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.125 -14.938 4.511 21.047 hybrid contribution 0.215 0.494 -0.475 0.719 sum 14.340 -14.443 4.036 20.749 Atomic orbital electron populations 1.69912 1.06294 1.26776 1.51554 1.25028 0.94686 0.99117 0.94719 0.86805 0.80449 0.83779 0.78414 1.20436 1.21512 1.18979 1.21154 0.89526 0.94269 1.50262 0.90984 1.19610 0.97064 0.91795 0.96160 1.21052 0.92431 0.98847 0.96846 1.21732 0.97587 0.94414 1.01547 1.22079 0.99460 0.96295 0.88822 1.61895 1.10306 1.18908 1.34966 1.21617 1.00770 0.90467 0.92082 1.23773 0.97404 0.97024 0.97517 0.84599 1.24400 1.01013 0.92366 1.03650 1.20052 0.81003 1.06161 0.76807 1.92995 1.42386 1.95035 1.83678 1.93024 1.95840 1.94590 1.30834 1.22288 0.86052 0.99175 1.00006 1.21557 1.01107 0.92774 0.98457 0.92852 0.96541 0.97217 0.92423 0.91547 0.92005 0.91455 0.95081 0.89831 0.93384 0.85946 0.86132 0.95080 0.91366 0.91869 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.51 -14.39 9.00 -34.44 -0.31 -14.70 16 8 H 0.07 2.15 7.32 -52.49 -0.38 1.77 16 9 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 10 C -0.07 -1.41 2.20 -90.50 -0.20 -1.61 16 11 C -0.11 -1.86 5.38 -26.65 -0.14 -2.00 16 12 C 0.06 0.83 5.46 -3.83 -0.02 0.81 16 13 N -0.54 -7.29 4.66 -234.67 -1.09 -8.38 16 14 C 0.08 0.85 5.22 -3.82 -0.02 0.83 16 15 C -0.14 -1.35 5.65 -90.62 -0.51 -1.86 16 16 H 0.14 1.37 6.33 -51.93 -0.33 1.04 16 17 C -0.18 -1.29 10.22 -26.74 -0.27 -1.56 16 18 C 0.20 2.10 5.20 -26.74 -0.14 1.96 16 19 F -0.16 -1.92 16.48 2.25 0.04 -1.88 16 20 F -0.16 -2.00 17.60 2.25 0.04 -1.96 16 21 C 0.05 0.75 5.31 -3.83 -0.02 0.73 16 22 C -0.10 -1.83 5.15 -26.65 -0.14 -1.97 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 25 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.82 8.01 -51.93 -0.42 0.40 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.88 6.90 -51.93 -0.36 0.52 16 32 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.87 6.16 -51.93 -0.32 0.55 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.58 7.05 -51.93 -0.37 1.21 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -30.52 306.81 -8.17 -38.69 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.91 Total: -3.29 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -1.97 Total: -17.89 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.32 Total: -35.50 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.08 Total: -3.84 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.52 -8.17 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691228585.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.966 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds